FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5669, 349 aa
  1>>>pF1KB5669 349 - 349 aa - 349 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8663+/-0.000706; mu= 15.2375+/- 0.043
 mean_var=92.2390+/-18.068, 0's: 0 Z-trim(112.1): 11  B-trim: 0 in 0/51
 Lambda= 0.133542
 statistics sampled from 12890 (12899) to 12890 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.745), E-opt: 0.2 (0.396), width:  16
 Scan time:  2.560

The best scores are:                                      opt bits E(32554)
CCDS5972.1 ERI1 gene_id:90459|Hs108|chr8           ( 349) 2346 461.5 4.7e-130
CCDS30696.1 ERI3 gene_id:79033|Hs108|chr1          ( 337)  467 99.5 4.4e-21


>>CCDS5972.1 ERI1 gene_id:90459|Hs108|chr8                (349 aa)
 initn: 2346 init1: 2346 opt: 2346  Z-score: 2448.3  bits: 461.5 E(32554): 4.7e-130
Smith-Waterman score: 2346; 99.7% identity (99.7% similar) in 349 aa overlap (1-349:1-349)

               10        20        30        40        50        60
pF1KB5 MEDPQSKEPAGEAVAPALLESPRPEGGEEPPRPSPEETQQCKFDGQETKGSKFITSSASD
       ::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MEDPQSKEPAGEAVALALLESPRPEGGEEPPRPSPEETQQCKFDGQETKGSKFITSSASD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 FSDPVYKEIAITNGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYKKQKLMLKES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 FSDPVYKEIAITNGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYKKQKLMLKES
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 NFADSYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 NFADSYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 QLSDFCISLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 QLSDFCISLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 IQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDDSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 IQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDDSK
              250       260       270       280       290       300

              310       320       330       340         
pF1KB5 NIARIAVRMLQDGCELRINEKMHAGQLMSVSSSLPIEGTPPPQMPHFRK
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 NIARIAVRMLQDGCELRINEKMHAGQLMSVSSSLPIEGTPPPQMPHFRK
              310       320       330       340         

>>CCDS30696.1 ERI3 gene_id:79033|Hs108|chr1               (337 aa)
 initn: 365 init1: 246 opt: 467  Z-score: 492.1  bits: 99.5 E(32554): 4.4e-21
Smith-Waterman score: 467; 40.7% identity (64.9% similar) in 194 aa overlap (121-313:137-327)

              100       110       120       130       140       150
pF1KB5 FKLETRGVKDVLKKRLKNYYKKQKLMLKESNFADSYYDYICIIDFEATCEEGNPPEFVHE
                                     .:  . : :. ..::::::..  :    .:
CCDS30 FSPCGVPEFCSISTRKLAAHGFGASMAAMVSFPPQRYHYFLVLDFEATCDK--PQIHPQE
        110       120       130       140       150         160    

              160       170       180       190       200       210
pF1KB5 IIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKV
       :::::.. :: .:.:::.::..::.: .. ::. ::  :::: : .::   .. :::..:
CCDS30 IIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERV
          170       180       190       200       210       220    

               220       230       240       250       260         
pF1KB5 IDWM-KLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYK
        .:: :   :  . :  ..: :.::.. .:  :::   :    . :.:::..:.: .:  
CCDS30 DEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAY-SFAM
          230       240       250       260       270        280   

     270       280       290       300       310       320         
pF1KB5 VPRSQTKLTIMLEKLGMDYDGRPHCGLDDSKNIARIAVRMLQDGCELRINEKMHAGQLMS
           .. :  : . :.... :::: :.:: :::: :   .   :                
CCDS30 GCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTSKPF      
           290       300       310       320       330             

     330       340         
pF1KB5 VSSSLPIEGTPPPQMPHFRK




349 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 13:11:38 2016 done: Sat Nov  5 13:11:39 2016
 Total Scan time:  2.560 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]