Result of FASTA (omim) for
pF1KB5669
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5669, 349 aa
1>>>pF1KB5669 349 - 349 aa - 349 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3341+/-0.000284; mu= 18.2212+/- 0.018
mean_var=87.7569+/-17.495, 0's: 0 Z-trim(119.6): 35 B-trim: 957 in 1/59
Lambda= 0.136910
statistics sampled from 33708 (33758) to 33708 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.738), E-opt: 0.2 (0.396), width: 16
Scan time: 8.460
The best scores are: opt bits E(85289)
NP_699163 (OMIM: 608739) 3'-5' exoribonuclease 1 [ ( 349) 2346 472.7 5.3e-133
XP_016869438 (OMIM: 608739) PREDICTED: 3'-5' exori ( 402) 2125 429.1 8.2e-120
XP_016869439 (OMIM: 608739) PREDICTED: 3'-5' exori ( 402) 2125 429.1 8.2e-120
XP_016869440 (OMIM: 608739) PREDICTED: 3'-5' exori ( 402) 2125 429.1 8.2e-120
XP_011542152 (OMIM: 608739) PREDICTED: 3'-5' exori ( 271) 1826 369.9 3.7e-102
XP_005272458 (OMIM: 608739) PREDICTED: 3'-5' exori ( 271) 1826 369.9 3.7e-102
XP_016869441 (OMIM: 608739) PREDICTED: 3'-5' exori ( 271) 1826 369.9 3.7e-102
XP_011542150 (OMIM: 608739) PREDICTED: 3'-5' exori ( 304) 1799 364.6 1.6e-100
XP_011542151 (OMIM: 608739) PREDICTED: 3'-5' exori ( 289) 1796 364.0 2.3e-100
XP_016869443 (OMIM: 608739) PREDICTED: 3'-5' exori ( 234) 1600 325.2 9.1e-89
XP_011542153 (OMIM: 608739) PREDICTED: 3'-5' exori ( 234) 1600 325.2 9.1e-89
XP_016869442 (OMIM: 608739) PREDICTED: 3'-5' exori ( 234) 1600 325.2 9.1e-89
XP_016869444 (OMIM: 608739) PREDICTED: 3'-5' exori ( 226) 1279 261.8 1.1e-69
NP_001288628 (OMIM: 609917) ERI1 exoribonuclease 3 ( 259) 467 101.4 2.3e-21
NP_001288627 (OMIM: 609917) ERI1 exoribonuclease 3 ( 259) 467 101.4 2.3e-21
XP_016857792 (OMIM: 609917) PREDICTED: ERI1 exorib ( 259) 467 101.4 2.3e-21
XP_016857790 (OMIM: 609917) PREDICTED: ERI1 exorib ( 335) 467 101.5 2.7e-21
NP_076971 (OMIM: 609917) ERI1 exoribonuclease 3 is ( 337) 467 101.5 2.8e-21
XP_016857793 (OMIM: 609917) PREDICTED: ERI1 exorib ( 219) 406 89.3 8.5e-18
NP_001288629 (OMIM: 609917) ERI1 exoribonuclease 3 ( 208) 384 84.9 1.7e-16
XP_016857791 (OMIM: 609917) PREDICTED: ERI1 exorib ( 208) 384 84.9 1.7e-16
XP_005271243 (OMIM: 609917) PREDICTED: ERI1 exorib ( 286) 384 85.1 2.1e-16
NP_001288630 (OMIM: 609917) ERI1 exoribonuclease 3 ( 160) 349 77.9 1.7e-14
XP_006710954 (OMIM: 609917) PREDICTED: ERI1 exorib ( 160) 349 77.9 1.7e-14
XP_016857794 (OMIM: 609917) PREDICTED: ERI1 exorib ( 160) 349 77.9 1.7e-14
>>NP_699163 (OMIM: 608739) 3'-5' exoribonuclease 1 [Homo (349 aa)
initn: 2346 init1: 2346 opt: 2346 Z-score: 2508.7 bits: 472.7 E(85289): 5.3e-133
Smith-Waterman score: 2346; 99.7% identity (99.7% similar) in 349 aa overlap (1-349:1-349)
10 20 30 40 50 60
pF1KB5 MEDPQSKEPAGEAVAPALLESPRPEGGEEPPRPSPEETQQCKFDGQETKGSKFITSSASD
::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::
NP_699 MEDPQSKEPAGEAVALALLESPRPEGGEEPPRPSPEETQQCKFDGQETKGSKFITSSASD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 FSDPVYKEIAITNGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYKKQKLMLKES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_699 FSDPVYKEIAITNGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYKKQKLMLKES
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 NFADSYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_699 NFADSYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 QLSDFCISLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_699 QLSDFCISLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 IQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDDSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_699 IQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDDSK
250 260 270 280 290 300
310 320 330 340
pF1KB5 NIARIAVRMLQDGCELRINEKMHAGQLMSVSSSLPIEGTPPPQMPHFRK
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_699 NIARIAVRMLQDGCELRINEKMHAGQLMSVSSSLPIEGTPPPQMPHFRK
310 320 330 340
>>XP_016869438 (OMIM: 608739) PREDICTED: 3'-5' exoribonu (402 aa)
initn: 2116 init1: 2116 opt: 2125 Z-score: 2272.0 bits: 429.1 E(85289): 8.2e-120
Smith-Waterman score: 2125; 96.6% identity (97.3% similar) in 328 aa overlap (22-349:75-402)
10 20 30 40 50
pF1KB5 MEDPQSKEPAGEAVAPALLESPRPEGGEEPPRPSPEETQQCKFDGQETKGS
:.: : :.:::::::::::::::
XP_016 CWRQLPRPQSALGTPFFSGVPQKVQLCALGPQPLPRCPAPWLYPRETQQCKFDGQETKGS
50 60 70 80 90 100
60 70 80 90 100 110
pF1KB5 KFITSSASDFSDPVYKEIAITNGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KFITSSASDFSDPVYKEIAITNGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYK
110 120 130 140 150 160
120 130 140 150 160 170
pF1KB5 KQKLMLKESNFADSYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KQKLMLKESNFADSYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQ
170 180 190 200 210 220
180 190 200 210 220 230
pF1KB5 QYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDG
230 240 250 260 270 280
240 250 260 270 280 290
pF1KB5 SWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGR
290 300 310 320 330 340
300 310 320 330 340
pF1KB5 PHCGLDDSKNIARIAVRMLQDGCELRINEKMHAGQLMSVSSSLPIEGTPPPQMPHFRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PHCGLDDSKNIARIAVRMLQDGCELRINEKMHAGQLMSVSSSLPIEGTPPPQMPHFRK
350 360 370 380 390 400
>--
initn: 280 init1: 240 opt: 240 Z-score: 259.8 bits: 56.8 E(85289): 9.8e-08
Smith-Waterman score: 240; 97.2% identity (97.2% similar) in 36 aa overlap (1-36:1-36)
10 20 30 40 50 60
pF1KB5 MEDPQSKEPAGEAVAPALLESPRPEGGEEPPRPSPEETQQCKFDGQETKGSKFITSSASD
::::::::::::::: ::::::::::::::::::::
XP_016 MEDPQSKEPAGEAVALALLESPRPEGGEEPPRPSPEVRSRPAPGCWRQLPRPQSALGTPF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 FSDPVYKEIAITNGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYKKQKLMLKES
XP_016 FSGVPQKVQLCALGPQPLPRCPAPWLYPRETQQCKFDGQETKGSKFITSSASDFSDPVYK
70 80 90 100 110 120
>>XP_016869439 (OMIM: 608739) PREDICTED: 3'-5' exoribonu (402 aa)
initn: 2116 init1: 2116 opt: 2125 Z-score: 2272.0 bits: 429.1 E(85289): 8.2e-120
Smith-Waterman score: 2125; 96.6% identity (97.3% similar) in 328 aa overlap (22-349:75-402)
10 20 30 40 50
pF1KB5 MEDPQSKEPAGEAVAPALLESPRPEGGEEPPRPSPEETQQCKFDGQETKGS
:.: : :.:::::::::::::::
XP_016 CWRQLPRPQSALGTPFFSGVPQKVQLCALGPQPLPRCPAPWLYPRETQQCKFDGQETKGS
50 60 70 80 90 100
60 70 80 90 100 110
pF1KB5 KFITSSASDFSDPVYKEIAITNGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KFITSSASDFSDPVYKEIAITNGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYK
110 120 130 140 150 160
120 130 140 150 160 170
pF1KB5 KQKLMLKESNFADSYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KQKLMLKESNFADSYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQ
170 180 190 200 210 220
180 190 200 210 220 230
pF1KB5 QYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDG
230 240 250 260 270 280
240 250 260 270 280 290
pF1KB5 SWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGR
290 300 310 320 330 340
300 310 320 330 340
pF1KB5 PHCGLDDSKNIARIAVRMLQDGCELRINEKMHAGQLMSVSSSLPIEGTPPPQMPHFRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PHCGLDDSKNIARIAVRMLQDGCELRINEKMHAGQLMSVSSSLPIEGTPPPQMPHFRK
350 360 370 380 390 400
>--
initn: 280 init1: 240 opt: 240 Z-score: 259.8 bits: 56.8 E(85289): 9.8e-08
Smith-Waterman score: 240; 97.2% identity (97.2% similar) in 36 aa overlap (1-36:1-36)
10 20 30 40 50 60
pF1KB5 MEDPQSKEPAGEAVAPALLESPRPEGGEEPPRPSPEETQQCKFDGQETKGSKFITSSASD
::::::::::::::: ::::::::::::::::::::
XP_016 MEDPQSKEPAGEAVALALLESPRPEGGEEPPRPSPEVRSRPAPGCWRQLPRPQSALGTPF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 FSDPVYKEIAITNGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYKKQKLMLKES
XP_016 FSGVPQKVQLCALGPQPLPRCPAPWLYPRETQQCKFDGQETKGSKFITSSASDFSDPVYK
70 80 90 100 110 120
>>XP_016869440 (OMIM: 608739) PREDICTED: 3'-5' exoribonu (402 aa)
initn: 2116 init1: 2116 opt: 2125 Z-score: 2272.0 bits: 429.1 E(85289): 8.2e-120
Smith-Waterman score: 2125; 96.6% identity (97.3% similar) in 328 aa overlap (22-349:75-402)
10 20 30 40 50
pF1KB5 MEDPQSKEPAGEAVAPALLESPRPEGGEEPPRPSPEETQQCKFDGQETKGS
:.: : :.:::::::::::::::
XP_016 CWRQLPRPQSALGTPFFSGVPQKVQLCALGPQPLPRCPAPWLYPRETQQCKFDGQETKGS
50 60 70 80 90 100
60 70 80 90 100 110
pF1KB5 KFITSSASDFSDPVYKEIAITNGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KFITSSASDFSDPVYKEIAITNGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYK
110 120 130 140 150 160
120 130 140 150 160 170
pF1KB5 KQKLMLKESNFADSYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KQKLMLKESNFADSYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQ
170 180 190 200 210 220
180 190 200 210 220 230
pF1KB5 QYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDG
230 240 250 260 270 280
240 250 260 270 280 290
pF1KB5 SWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGR
290 300 310 320 330 340
300 310 320 330 340
pF1KB5 PHCGLDDSKNIARIAVRMLQDGCELRINEKMHAGQLMSVSSSLPIEGTPPPQMPHFRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PHCGLDDSKNIARIAVRMLQDGCELRINEKMHAGQLMSVSSSLPIEGTPPPQMPHFRK
350 360 370 380 390 400
>--
initn: 280 init1: 240 opt: 240 Z-score: 259.8 bits: 56.8 E(85289): 9.8e-08
Smith-Waterman score: 240; 97.2% identity (97.2% similar) in 36 aa overlap (1-36:1-36)
10 20 30 40 50 60
pF1KB5 MEDPQSKEPAGEAVAPALLESPRPEGGEEPPRPSPEETQQCKFDGQETKGSKFITSSASD
::::::::::::::: ::::::::::::::::::::
XP_016 MEDPQSKEPAGEAVALALLESPRPEGGEEPPRPSPEVRSRPAPGCWRQLPRPQSALGTPF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 FSDPVYKEIAITNGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYKKQKLMLKES
XP_016 FSGVPQKVQLCALGPQPLPRCPAPWLYPRETQQCKFDGQETKGSKFITSSASDFSDPVYK
70 80 90 100 110 120
>>XP_011542152 (OMIM: 608739) PREDICTED: 3'-5' exoribonu (271 aa)
initn: 1826 init1: 1826 opt: 1826 Z-score: 1955.1 bits: 369.9 E(85289): 3.7e-102
Smith-Waterman score: 1826; 100.0% identity (100.0% similar) in 271 aa overlap (79-349:1-271)
50 60 70 80 90 100
pF1KB5 KGSKFITSSASDFSDPVYKEIAITNGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKN
::::::::::::::::::::::::::::::
XP_011 MSKEELRAKLSEFKLETRGVKDVLKKRLKN
10 20 30
110 120 130 140 150 160
pF1KB5 YYKKQKLMLKESNFADSYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YYKKQKLMLKESNFADSYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIED
40 50 60 70 80 90
170 180 190 200 210 220
pF1KB5 TFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLL
100 110 120 130 140 150
230 240 250 260 270 280
pF1KB5 TDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDY
160 170 180 190 200 210
290 300 310 320 330 340
pF1KB5 DGRPHCGLDDSKNIARIAVRMLQDGCELRINEKMHAGQLMSVSSSLPIEGTPPPQMPHFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DGRPHCGLDDSKNIARIAVRMLQDGCELRINEKMHAGQLMSVSSSLPIEGTPPPQMPHFR
220 230 240 250 260 270
pF1KB5 K
:
XP_011 K
>>XP_005272458 (OMIM: 608739) PREDICTED: 3'-5' exoribonu (271 aa)
initn: 1826 init1: 1826 opt: 1826 Z-score: 1955.1 bits: 369.9 E(85289): 3.7e-102
Smith-Waterman score: 1826; 100.0% identity (100.0% similar) in 271 aa overlap (79-349:1-271)
50 60 70 80 90 100
pF1KB5 KGSKFITSSASDFSDPVYKEIAITNGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKN
::::::::::::::::::::::::::::::
XP_005 MSKEELRAKLSEFKLETRGVKDVLKKRLKN
10 20 30
110 120 130 140 150 160
pF1KB5 YYKKQKLMLKESNFADSYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YYKKQKLMLKESNFADSYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIED
40 50 60 70 80 90
170 180 190 200 210 220
pF1KB5 TFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLL
100 110 120 130 140 150
230 240 250 260 270 280
pF1KB5 TDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDY
160 170 180 190 200 210
290 300 310 320 330 340
pF1KB5 DGRPHCGLDDSKNIARIAVRMLQDGCELRINEKMHAGQLMSVSSSLPIEGTPPPQMPHFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DGRPHCGLDDSKNIARIAVRMLQDGCELRINEKMHAGQLMSVSSSLPIEGTPPPQMPHFR
220 230 240 250 260 270
pF1KB5 K
:
XP_005 K
>>XP_016869441 (OMIM: 608739) PREDICTED: 3'-5' exoribonu (271 aa)
initn: 1826 init1: 1826 opt: 1826 Z-score: 1955.1 bits: 369.9 E(85289): 3.7e-102
Smith-Waterman score: 1826; 100.0% identity (100.0% similar) in 271 aa overlap (79-349:1-271)
50 60 70 80 90 100
pF1KB5 KGSKFITSSASDFSDPVYKEIAITNGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKN
::::::::::::::::::::::::::::::
XP_016 MSKEELRAKLSEFKLETRGVKDVLKKRLKN
10 20 30
110 120 130 140 150 160
pF1KB5 YYKKQKLMLKESNFADSYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YYKKQKLMLKESNFADSYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIED
40 50 60 70 80 90
170 180 190 200 210 220
pF1KB5 TFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLL
100 110 120 130 140 150
230 240 250 260 270 280
pF1KB5 TDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDY
160 170 180 190 200 210
290 300 310 320 330 340
pF1KB5 DGRPHCGLDDSKNIARIAVRMLQDGCELRINEKMHAGQLMSVSSSLPIEGTPPPQMPHFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DGRPHCGLDDSKNIARIAVRMLQDGCELRINEKMHAGQLMSVSSSLPIEGTPPPQMPHFR
220 230 240 250 260 270
pF1KB5 K
:
XP_016 K
>>XP_011542150 (OMIM: 608739) PREDICTED: 3'-5' exoribonu (304 aa)
initn: 1799 init1: 1799 opt: 1799 Z-score: 1925.6 bits: 364.6 E(85289): 1.6e-100
Smith-Waterman score: 1799; 98.9% identity (98.9% similar) in 272 aa overlap (1-272:1-272)
10 20 30 40 50 60
pF1KB5 MEDPQSKEPAGEAVAPALLESPRPEGGEEPPRPSPEETQQCKFDGQETKGSKFITSSASD
::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::
XP_011 MEDPQSKEPAGEAVALALLESPRPEGGEEPPRPSPEETQQCKFDGQETKGSKFITSSASD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 FSDPVYKEIAITNGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYKKQKLMLKES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FSDPVYKEIAITNGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYKKQKLMLKES
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 NFADSYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NFADSYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 QLSDFCISLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLSDFCISLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 IQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDDSK
::::::::::::::::::::::::::::: :
XP_011 IQCQLSRLKYPPFAKKWINIRKSYGNFYKRKRKGPGVATGKPQLVWEGNLTCDASGRLCK
250 260 270 280 290 300
310 320 330 340
pF1KB5 NIARIAVRMLQDGCELRINEKMHAGQLMSVSSSLPIEGTPPPQMPHFRK
XP_011 LLGD
>>XP_011542151 (OMIM: 608739) PREDICTED: 3'-5' exoribonu (289 aa)
initn: 1796 init1: 1796 opt: 1796 Z-score: 1922.7 bits: 364.0 E(85289): 2.3e-100
Smith-Waterman score: 1796; 99.6% identity (99.6% similar) in 269 aa overlap (1-269:1-269)
10 20 30 40 50 60
pF1KB5 MEDPQSKEPAGEAVAPALLESPRPEGGEEPPRPSPEETQQCKFDGQETKGSKFITSSASD
::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::
XP_011 MEDPQSKEPAGEAVALALLESPRPEGGEEPPRPSPEETQQCKFDGQETKGSKFITSSASD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 FSDPVYKEIAITNGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYKKQKLMLKES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FSDPVYKEIAITNGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYKKQKLMLKES
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 NFADSYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NFADSYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 QLSDFCISLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLSDFCISLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 IQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDDSK
:::::::::::::::::::::::::::::
XP_011 IQCQLSRLKYPPFAKKWINIRKSYGNFYKGEVSAWIETKKHRRHKHVTY
250 260 270 280
>>XP_016869443 (OMIM: 608739) PREDICTED: 3'-5' exoribonu (234 aa)
initn: 1600 init1: 1600 opt: 1600 Z-score: 1714.7 bits: 325.2 E(85289): 9.1e-89
Smith-Waterman score: 1600; 100.0% identity (100.0% similar) in 234 aa overlap (116-349:1-234)
90 100 110 120 130 140
pF1KB5 AKLSEFKLETRGVKDVLKKRLKNYYKKQKLMLKESNFADSYYDYICIIDFEATCEEGNPP
::::::::::::::::::::::::::::::
XP_016 MLKESNFADSYYDYICIIDFEATCEEGNPP
10 20 30
150 160 170 180 190 200
pF1KB5 EFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQ
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB5 VLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYG
100 110 120 130 140 150
270 280 290 300 310 320
pF1KB5 NFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDDSKNIARIAVRMLQDGCELRINEKMHAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDDSKNIARIAVRMLQDGCELRINEKMHAG
160 170 180 190 200 210
330 340
pF1KB5 QLMSVSSSLPIEGTPPPQMPHFRK
::::::::::::::::::::::::
XP_016 QLMSVSSSLPIEGTPPPQMPHFRK
220 230
349 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 13:11:39 2016 done: Sat Nov 5 13:11:40 2016
Total Scan time: 8.460 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]