(Circular) (Six-base) MAPSORT of: pF1KB5675.seq Check: 1011 from: 1 to: 6146 pF1KB5675 6146 bp With 182 enzymes: SgfI * April 24, 2009 13:04 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 314 807 1326 2819 314 Size: 493 519 1493 3641 Fragments arranged by size: 3641 1493 519 493 AccI GT'mk_AC Cuts at: 3184 3184 Size: 6146 Acc65I G'GTAC_C Cuts at: 3162 3162 Size: 6146 AclI AA'CG_TT Cuts at: 1951 5986 1951 Size: 4035 2111 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 862 1815 2076 2581 3971 4403 4756 5418 862 Size: 953 261 505 1390 432 353 662 1590 Fragments arranged by size: 1590 1390 953 662 505 432 353 261 AflIII A'CryG_T Cuts at: 1085 3498 5298 5579 1085 Size: 2413 1800 281 1652 Fragments arranged by size: 2413 1800 1652 281 AgeI A'CCGG_T Cuts at: 1273 1273 Size: 6146 AleI CACnn'nnGTG Cuts at: 392 602 871 2974 392 Size: 210 269 2103 3564 Fragments arranged by size: 3564 2103 269 210 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 521 1756 2809 2885 521 Size: 1235 1053 76 3782 Fragments arranged by size: 3782 1235 1053 76 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 1786 1818 1786 Size: 32 6114 AlwNI CAG_nnn'CTG Cuts at: 804 939 1607 3451 4889 804 Size: 135 668 1844 1438 2061 Fragments arranged by size: 2061 1844 1438 668 135 ApaI G_GGCC'C Cuts at: 2836 2836 Size: 6146 ApaLI G'TGCA_C Cuts at: 301 1406 2173 2545 2806 4984 301 Size: 1105 767 372 261 2178 1463 Fragments arranged by size: 2178 1463 1105 767 372 261 ApoI r'AATT_y Cuts at: 3150 5499 5755 3150 Size: 2349 256 3541 Fragments arranged by size: 3541 2349 256 AseI AT'TA_AT Cuts at: 20 20 Size: 6146 AsiSI GCG_AT'CGC Cuts at: 104 104 Size: 6146 AvaI C'yCGr_G Cuts at: 248 710 961 2724 2749 3166 248 Size: 462 251 1763 25 417 3228 Fragments arranged by size: 3228 1763 462 417 251 25 BamHI G'GATC_C Cuts at: 3171 3171 Size: 6146 BanI G'GyrC_C Cuts at: 112 491 545 604 764 1459 1854 2080 2231 Size: 379 54 59 160 695 395 226 151 Cuts at: 2231 2627 2734 3162 3576 3824 3859 112 Size: 396 107 428 414 248 35 2399 Fragments arranged by size: 2399 695 428 414 396 395 379 248 226 160 151 107 59 54 35 BanII G_rGCy'C Cuts at: 1060 2136 2417 2540 2757 2836 3160 4190 1060 Size: 1076 281 123 217 79 324 1030 3016 Fragments arranged by size: 3016 1076 1030 324 281 217 123 79 BbeI G_GCGC'C Cuts at: 116 549 768 2631 2738 3580 3828 116 Size: 433 219 1863 107 842 248 2434 Fragments arranged by size: 2434 1863 842 433 248 219 107 BbsI GAAGACnn'nnnn_ Cuts at: 2158 2158 Size: 6146 BbvCI CC'TCA_GC Cuts at: 1318 1318 Size: 6146 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1413 1447 1413 Size: 34 6112 BciVI GTATCCnnnnn_n' Cuts at: 253 4044 5100 6146 253 Size: 3791 1056 1046 253 Fragments arranged by size: 3791 1056 1046 253 BclI T'GATC_A Cuts at: 3666 3666 Size: 6146 BglI GCCn_nnn'nGGC Cuts at: 433 433 Size: 6146 BglII A'GATC_T Cuts at: 3661 5698 3661 Size: 2037 4109 BlpI GC'TnA_GC Cuts at: 1615 3258 1615 Size: 1643 4503 Bme1580I G_kGCm'C Cuts at: 305 1410 1745 2177 2549 2810 2836 3771 3864 Size: 1105 335 432 372 261 26 935 93 Cuts at: 3864 4988 305 Size: 1124 1463 Fragments arranged by size: 1463 1124 1105 935 432 372 335 261 93 26 BmgBI CAC'GTC Cuts at: 330 330 Size: 6146 BmrI ACTGGGnnnn_n' Cuts at: 3358 3439 3774 5918 3358 Size: 81 335 2144 3586 Fragments arranged by size: 3586 2144 335 81 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 738 3018 4513 738 Size: 2280 1495 2371 Fragments arranged by size: 2371 2280 1495 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 571 664 826 1372 1420 2257 2338 2386 2554 Size: 93 162 546 48 837 81 48 168 Cuts at: 2554 2988 571 Size: 434 3729 Fragments arranged by size: 3729 837 546 434 168 162 93 81 48 48 Bpu10I CC'TnA_GC Cuts at: 1318 2899 1318 Size: 1581 4565 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2943 2995 3322 4201 4915 5213 2943 Size: 52 327 879 714 298 3876 Fragments arranged by size: 3876 879 714 327 298 52 BsaI GGTCTCn'nnnn_ Cuts at: 521 2959 5850 521 Size: 2438 2891 817 Fragments arranged by size: 2891 2438 817 BsaAI yAC'GTr Cuts at: 462 1476 3499 462 Size: 1014 2023 3109 Fragments arranged by size: 3109 2023 1014 BsaBI GATnn'nnATC Cuts at: 6 2455 3660 5697 6 Size: 2449 1205 2037 455 Fragments arranged by size: 2449 2037 1205 455 BsaHI Gr'CG_yC Cuts at: 113 546 765 1448 2628 2735 3577 3825 4527 Size: 433 219 683 1180 107 842 248 702 Cuts at: 4527 6023 113 Size: 1496 236 Fragments arranged by size: 1496 1180 842 702 683 433 248 236 219 107 BsaWI w'CCGG_w Cuts at: 1273 1396 1791 2887 3335 3856 4534 4945 5092 Size: 123 395 1096 448 521 678 411 147 Cuts at: 5092 5366 1273 Size: 274 2053 Fragments arranged by size: 2053 1096 678 521 448 411 395 274 147 123 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 805 835 1786 1816 2230 2260 2590 2620 2663 Size: 30 951 30 414 30 330 30 43 Cuts at: 2663 2693 2851 2881 2920 2950 805 Size: 30 158 30 39 30 4001 Fragments arranged by size: 4001 951 414 330 158 43 39 30 30 30 30 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 2385 2747 2385 Size: 362 5784 BseYI C'CCAG_C Cuts at: 569 911 1511 1744 1765 2129 2828 3571 4329 Size: 342 600 233 21 364 699 743 758 Cuts at: 4329 4994 5402 569 Size: 665 408 1313 Fragments arranged by size: 1313 758 743 699 665 600 408 364 342 233 21 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 301 418 2185 301 Size: 117 1767 4262 Fragments arranged by size: 4262 1767 117 BsiEI CG_ry'CG Cuts at: 104 854 1294 3688 3734 4964 104 Size: 750 440 2394 46 1230 1286 Fragments arranged by size: 2394 1286 1230 750 440 46 BsiHKAI G_wGCw'C Cuts at: 249 305 1410 1436 1940 2177 2540 2549 2810 Size: 56 1105 26 504 237 363 9 261 Cuts at: 2810 2864 3160 3938 4128 4988 249 Size: 54 296 778 190 860 1407 Fragments arranged by size: 1407 1105 860 778 504 363 296 261 237 190 56 54 26 9 BsmI GAATG_Cn' Cuts at: 1083 1083 Size: 6146 Bsp1286I G_dGCh'C Cuts at: 249 305 1060 1410 1436 1745 1940 2136 2177 Size: 56 755 350 26 309 195 196 41 Cuts at: 2177 2417 2540 2549 2757 2810 2836 2864 3160 Size: 240 123 9 208 53 26 28 296 Cuts at: 3160 3771 3864 3938 4128 4190 4988 249 Size: 611 93 74 190 62 798 1407 Fragments arranged by size: 1407 798 755 611 350 309 296 240 208 196 195 190 123 93 74 62 56 53 41 28 26 26 9 BspEI T'CCGG_A Cuts at: 1396 1791 2887 1396 Size: 395 1096 4655 Fragments arranged by size: 4655 1096 395 BspHI T'CATG_A Cuts at: 4578 4578 Size: 6146 BspMI ACCTGCnnnn'nnnn_ Cuts at: 314 807 1326 2801 2819 3196 3410 3712 4093 Size: 493 519 1475 18 377 214 302 381 Cuts at: 4093 314 Size: 2367 Fragments arranged by size: 2367 1475 519 493 381 377 302 214 18 BsrBI CCG'CTC Cuts at: 50 201 1614 2498 4438 4492 5976 6141 50 Size: 151 1413 884 1940 54 1484 165 55 Fragments arranged by size: 1940 1484 1413 884 165 151 55 54 BsrDI GCAATG_nn' Cuts at: 666 2355 4058 666 Size: 1689 1703 2754 Fragments arranged by size: 2754 1703 1689 BsrFI r'CCGG_y Cuts at: 241 391 1019 1273 1293 1692 2675 4144 4325 Size: 150 628 254 20 399 983 1469 181 Cuts at: 4325 241 Size: 2062 Fragments arranged by size: 2062 1469 983 628 399 254 181 150 20 BssHII G'CGCG_C Cuts at: 1492 1630 1492 Size: 138 6008 BssSI C'ACGA_G Cuts at: 4417 5125 4417 Size: 708 5438 BstAPI GCAn_nnn'nTGC Cuts at: 309 2007 2172 3523 309 Size: 1698 165 1351 2932 Fragments arranged by size: 2932 1698 1351 165 BstBI TT'CG_AA Cuts at: 4507 4507 Size: 6146 BstXI CCAn_nnnn'nTGG Cuts at: 981 1752 2976 981 Size: 771 1224 4151 Fragments arranged by size: 4151 1224 771 BstYI r'GATC_y Cuts at: 1 438 1903 2138 2360 3171 3638 3661 3996 Size: 437 1465 235 222 811 467 23 335 Cuts at: 3996 4242 4548 4560 4646 5698 1 Size: 246 306 12 86 1052 449 Fragments arranged by size: 1465 1052 811 467 449 437 335 306 246 235 222 86 23 12 Bsu36I CC'TnA_GG Cuts at: 2076 2708 2076 Size: 632 5514 BtgI C'CryG_G Cuts at: 107 347 854 1052 2417 3089 107 Size: 240 507 198 1365 672 3164 Fragments arranged by size: 3164 1365 672 507 240 198 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 1438 1763 4096 4277 4440 1438 Size: 325 2333 181 163 3144 Fragments arranged by size: 3144 2333 325 181 163 BtsI GCAGTG_nn' Cuts at: 1007 1155 1813 3389 1007 Size: 148 658 1576 3764 Fragments arranged by size: 3764 1576 658 148 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 766 801 766 Size: 35 6111 DraI TTT'AAA Cuts at: 3145 3145 Size: 6146 DraIII CAC_nnn'GTG Cuts at: 1044 2148 2637 1044 Size: 1104 489 4553 Fragments arranged by size: 4553 1104 489 DrdI GACnn_nn'nnGTC Cuts at: 3852 5196 3852 Size: 1344 4802 EaeI y'GGCC_r Cuts at: 193 702 1004 1291 1373 1478 2352 2822 2978 Size: 509 302 287 82 105 874 470 156 Cuts at: 2978 3068 3731 3905 4296 4323 5668 193 Size: 90 663 174 391 27 1345 671 Fragments arranged by size: 1345 874 671 663 509 470 391 302 287 174 156 105 90 82 27 EagI C'GGCC_G Cuts at: 1291 3731 1291 Size: 2440 3706 EarI CTCTTCn'nnn_ Cuts at: 868 4169 4379 868 Size: 3301 210 2635 Fragments arranged by size: 3301 2635 210 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 1680 2701 4354 5096 5242 5956 1680 Size: 1021 1653 742 146 714 1870 Fragments arranged by size: 1870 1653 1021 742 714 146 EcoICRI GAG'CTC Cuts at: 2538 3158 2538 Size: 620 5526 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 571 664 826 862 1372 1420 1815 2076 2257 Size: 93 162 36 510 48 395 261 181 Cuts at: 2257 2338 2386 2554 2581 2988 3971 4403 4756 Size: 81 48 168 27 407 983 432 353 Cuts at: 4756 5418 571 Size: 662 1299 Fragments arranged by size: 1299 983 662 510 432 407 395 353 261 181 168 162 93 81 48 48 36 27 EcoNI CCTnn'n_nnAGG Cuts at: 1417 1964 1417 Size: 547 5599 EcoO109I rG'GnC_Cy Cuts at: 166 948 1384 1516 1722 2697 2790 2832 2833 Size: 782 436 132 206 975 93 42 1 Cuts at: 2833 2928 3031 3285 166 Size: 95 103 254 3027 Fragments arranged by size: 3027 975 782 436 254 206 132 103 95 93 42 1 EcoRI G'AATT_C Cuts at: 3150 3150 Size: 6146 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2175 2349 4165 2175 Size: 174 1816 4156 Fragments arranged by size: 4156 1816 174 FseI GG_CCGG'CC Cuts at: 1297 1297 Size: 6146 FspI TGC'GCA Cuts at: 734 1130 2785 3927 734 Size: 396 1655 1142 2953 Fragments arranged by size: 2953 1655 1142 396 HaeII r_GCGC'y Cuts at: 116 549 768 1317 1360 2631 2738 2906 3580 Size: 433 219 549 43 1271 107 168 674 Cuts at: 3580 3828 5058 5829 116 Size: 248 1230 771 433 Fragments arranged by size: 1271 1230 771 674 549 433 433 248 219 168 107 43 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 2059 2091 2590 2622 2663 2695 2920 2952 3988 Size: 32 499 32 41 32 225 32 1036 Cuts at: 3988 4018 4020 4050 2059 Size: 30 2 30 4155 Fragments arranged by size: 4155 1036 499 225 41 32 32 32 32 30 30 2 HincII GTy'rAC Cuts at: 2442 3185 2442 Size: 743 5403 KasI G'GCGC_C Cuts at: 112 545 764 2627 2734 3576 3824 112 Size: 433 219 1863 107 842 248 2434 Fragments arranged by size: 2434 1863 842 433 248 219 107 KpnI G_GTAC'C Cuts at: 3166 3166 Size: 6146 MluI A'CGCG_T Cuts at: 5579 5579 Size: 6146 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 4905 5089 4905 Size: 184 5962 MscI TGG'CCA Cuts at: 1006 1480 2824 2980 3907 1006 Size: 474 1344 156 927 3245 Fragments arranged by size: 3245 1344 927 474 156 MslI CAynn'nnrTG Cuts at: 320 392 460 602 871 1045 2974 4135 4262 Size: 72 68 142 269 174 1929 1161 127 Cuts at: 4262 320 Size: 2204 Fragments arranged by size: 2204 1929 1161 269 174 142 127 72 68 MspA1I CmG'CkG Cuts at: 856 939 1119 1350 1457 2115 2129 2229 2316 Size: 83 180 231 107 658 14 100 87 Cuts at: 2316 2478 2828 3060 3257 3571 3931 4715 4960 Size: 162 350 232 197 314 360 784 245 Cuts at: 4960 856 Size: 2042 Fragments arranged by size: 2042 784 658 360 350 314 245 232 231 197 180 162 107 100 87 83 14 NaeI GCC'GGC Cuts at: 1295 4327 1295 Size: 3032 3114 NarI GG'CG_CC Cuts at: 113 546 765 2628 2735 3577 3825 113 Size: 433 219 1863 107 842 248 2434 Fragments arranged by size: 2434 1863 842 433 248 219 107 NcoI C'CATG_G Cuts at: 107 1052 3089 107 Size: 945 2037 3164 Fragments arranged by size: 3164 2037 945 NgoMIV G'CCGG_C Cuts at: 1293 4325 1293 Size: 3032 3114 NspI r_CATG'y Cuts at: 272 294 1089 2475 3199 3699 5302 272 Size: 22 795 1386 724 500 1603 1116 Fragments arranged by size: 1603 1386 1116 795 724 500 22 PasI CC'CwG_GG Cuts at: 1014 1659 1824 2502 1014 Size: 645 165 678 4658 Fragments arranged by size: 4658 678 645 165 PciI A'CATG_T Cuts at: 1085 5298 1085 Size: 4213 1933 PflMI CCAn_nnn'nTGG Cuts at: 1088 1476 1088 Size: 388 5758 PfoI T'CCnGG_A Cuts at: 407 2363 407 Size: 1956 4190 PmeI GTTT'AAAC Cuts at: 3145 3145 Size: 6146 PmlI CAC'GTG Cuts at: 1476 1476 Size: 6146 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 1786 1818 4592 4624 1786 Size: 32 2774 32 3308 Fragments arranged by size: 3308 2774 32 32 PpuMI rG'GwC_Cy Cuts at: 948 1384 1722 2697 2790 2928 948 Size: 436 338 975 93 138 4166 Fragments arranged by size: 4166 975 436 338 138 93 PsiI TTA'TAA Cuts at: 1652 1652 Size: 6146 PspOMI G'GGCC_C Cuts at: 2832 2832 Size: 6146 PstI C_TGCA'G Cuts at: 1337 2664 2963 3193 3878 1337 Size: 1327 299 230 685 3605 Fragments arranged by size: 3605 1327 685 299 230 PvuI CG_AT'CG Cuts at: 104 104 Size: 6146 PvuII CAG'CTG Cuts at: 1119 1350 2478 2828 3060 3571 3931 1119 Size: 231 1128 350 232 511 360 3334 Fragments arranged by size: 3334 1128 511 360 350 232 231 RsrII CG'GwC_CG Cuts at: 4341 4341 Size: 6146 SacI G_AGCT'C Cuts at: 2540 3160 2540 Size: 620 5526 SacII CC_GC'GG Cuts at: 857 857 Size: 6146 SalI G'TCGA_C Cuts at: 3183 3183 Size: 6146 SanDI GG'GwC_CC Cuts at: 1384 1384 Size: 6146 SapI GCTCTTCn'nnn_ Cuts at: 4169 4379 4169 Size: 210 5936 SbfI CC_TGCA'GG Cuts at: 1337 2963 3193 1337 Size: 1626 230 4290 Fragments arranged by size: 4290 1626 230 ScaI AGT'ACT Cuts at: 358 5663 358 Size: 5305 841 SexAI A'CCwGG_T Cuts at: 1213 2144 2633 1213 Size: 931 489 4726 Fragments arranged by size: 4726 931 489 SfcI C'TryA_G Cuts at: 33 1333 2660 2959 3189 3874 4842 5033 33 Size: 1300 1327 299 230 685 968 191 1146 Fragments arranged by size: 1327 1300 1146 968 685 299 230 191 SfoI GGC'GCC Cuts at: 114 547 766 2629 2736 3578 3826 114 Size: 433 219 1863 107 842 248 2434 Fragments arranged by size: 2434 1863 842 433 248 219 107 SgfI GCG_AT'CGC Cuts at: 104 104 Size: 6146 SgrAI Cr'CCGG_yG Cuts at: 391 391 Size: 6146 SmaI CCC'GGG Cuts at: 2726 3168 2726 Size: 442 5704 SmlI C'TyrA_G Cuts at: 2922 3010 3301 4216 4930 5192 2922 Size: 88 291 915 714 262 3876 Fragments arranged by size: 3876 915 714 291 262 88 SpeI A'CTAG_T Cuts at: 67 67 Size: 6146 SphI G_CATG'C Cuts at: 3199 3699 3199 Size: 500 5646 SspI AAT'ATT Cuts at: 1760 1760 Size: 6146 StuI AGG'CCT Cuts at: 721 2074 721 Size: 1353 4793 StyI C'CwwG_G Cuts at: 107 898 974 1052 2159 3089 3280 3634 107 Size: 791 76 78 1107 930 191 354 2619 Fragments arranged by size: 2619 1107 930 791 354 191 78 76 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 405 561 610 2607 3729 3862 4321 4530 405 Size: 156 49 1997 1122 133 459 209 2021 Fragments arranged by size: 2021 1997 1122 459 209 156 133 49 TatI w'GTAC_w Cuts at: 356 401 965 5661 356 Size: 45 564 4696 841 Fragments arranged by size: 4696 841 564 45 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 805 837 907 939 1877 1909 2230 2262 5663 Size: 32 70 32 938 32 321 32 3401 Cuts at: 5663 5695 805 Size: 32 1256 Fragments arranged by size: 3401 1256 938 321 70 32 32 32 32 32 Tth111I GACn'n_nGTC Cuts at: 177 415 1450 3943 177 Size: 238 1035 2493 2380 Fragments arranged by size: 2493 2380 1035 238 XbaI T'CTAG_A Cuts at: 3177 3177 Size: 6146 XcmI CCAnnnn_n'nnnnTGG Cuts at: 361 625 3078 3641 361 Size: 264 2453 563 2866 Fragments arranged by size: 2866 2453 563 264 XmaI C'CCGG_G Cuts at: 2724 3166 2724 Size: 442 5704 Enzymes that do cut: AarI AccI Acc65I AclI AcuI AflIII AgeI AleI AlfI AloI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbeI BbsI BbvCI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BssHII BssSI BstAPI BstBI BstXI BstYI Bsu36I BtgI BtgZI BtsI CspCI DraI DraIII DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI FalI FseI FspI HaeII Hin4I HincII KasI KpnI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NgoMIV NspI PasI PciI PflMI PfoI PmeI PmlI PpiI PpuMI PsiI PspOMI PstI PvuI PvuII RsrII SacI SacII SalI SanDI SapI SbfI ScaI SexAI SfcI SfoI SgfI SgrAI SmaI SmlI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XmaI Enzymes that do not cut: AatII AfeI AflII AhdI AscI AvrII BaeI BfrBI BmtI BsiWI BsmBI BsrGI BstEII BstZ17I ClaI EcoRV FspAI HindIII HpaI MfeI NdeI NheI NotI NruI NsiI PacI PshAI PspXI PsrI SfiI SnaBI SrfI SwaI XhoI XmnI ZraI