FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB5695, 636 aa 1>>>pF1KB5695 636 - 636 aa - 636 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.6826+/-0.000648; mu= 2.9091+/- 0.041 mean_var=409.0303+/-89.657, 0's: 0 Z-trim(117.1): 178 B-trim: 3336 in 2/49 Lambda= 0.063416 statistics sampled from 28509 (28721) to 28509 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.676), E-opt: 0.2 (0.337), width: 16 Scan time: 7.720 The best scores are: opt bits E(85289) NP_002559 (OMIM: 604679) polyadenylate-binding pro ( 636) 4211 400.3 1.1e-110 XP_005250918 (OMIM: 604679) PREDICTED: polyadenyla ( 636) 4211 400.3 1.1e-110 NP_112241 (OMIM: 604680) polyadenylate-binding pro ( 631) 3818 364.3 7.2e-100 NP_001129126 (OMIM: 603407) polyadenylate-binding ( 631) 3255 312.8 2.3e-84 NP_003810 (OMIM: 603407) polyadenylate-binding pro ( 644) 2648 257.3 1.2e-67 NP_001129125 (OMIM: 603407) polyadenylate-binding ( 660) 2646 257.1 1.4e-67 NP_543022 (OMIM: 300407) polyadenylate-binding pro ( 382) 1606 161.7 4.4e-39 NP_005841 (OMIM: 154400,605593) splicing factor 3B ( 424) 402 51.6 6.8e-06 NP_001310894 (OMIM: 603413) nucleolysin TIAR isofo ( 252) 295 41.5 0.0043 NP_001310893 (OMIM: 603413) nucleolysin TIAR isofo ( 252) 295 41.5 0.0043 XP_016872095 (OMIM: 603413) PREDICTED: nucleolysin ( 252) 295 41.5 0.0043 NP_001310896 (OMIM: 603413) nucleolysin TIAR isofo ( 252) 295 41.5 0.0043 NP_001164666 (OMIM: 601673) ELAV-like protein 2 is ( 346) 297 41.9 0.0046 XP_016869914 (OMIM: 601673) PREDICTED: ELAV-like p ( 346) 297 41.9 0.0046 NP_001164668 (OMIM: 601673) ELAV-like protein 2 is ( 346) 297 41.9 0.0046 XP_016869913 (OMIM: 601673) PREDICTED: ELAV-like p ( 346) 297 41.9 0.0046 XP_016869908 (OMIM: 601673) PREDICTED: ELAV-like p ( 359) 297 41.9 0.0048 NP_004423 (OMIM: 601673) ELAV-like protein 2 isofo ( 359) 297 41.9 0.0048 XP_016869911 (OMIM: 601673) PREDICTED: ELAV-like p ( 359) 297 41.9 0.0048 XP_016869910 (OMIM: 601673) PREDICTED: ELAV-like p ( 359) 297 41.9 0.0048 XP_016869912 (OMIM: 601673) PREDICTED: ELAV-like p ( 359) 297 41.9 0.0048 XP_016869909 (OMIM: 601673) PREDICTED: ELAV-like p ( 359) 297 41.9 0.0048 XP_005251450 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 297 41.9 0.0048 XP_011516087 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 297 41.9 0.0048 XP_011516086 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 297 41.9 0.0048 XP_011516088 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 297 41.9 0.0048 XP_016869907 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 297 41.9 0.0048 XP_005251452 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 297 41.9 0.0048 XP_005251451 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 297 41.9 0.0048 XP_006716799 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 297 41.9 0.0048 XP_016869906 (OMIM: 601673) PREDICTED: ELAV-like p ( 373) 297 41.9 0.0049 XP_011516085 (OMIM: 601673) PREDICTED: ELAV-like p ( 374) 297 41.9 0.0049 XP_016869905 (OMIM: 601673) PREDICTED: ELAV-like p ( 375) 297 41.9 0.0049 XP_011516079 (OMIM: 601673) PREDICTED: ELAV-like p ( 375) 297 41.9 0.0049 XP_016869904 (OMIM: 601673) PREDICTED: ELAV-like p ( 376) 297 41.9 0.0049 XP_011516078 (OMIM: 601673) PREDICTED: ELAV-like p ( 376) 297 41.9 0.0049 XP_016869903 (OMIM: 601673) PREDICTED: ELAV-like p ( 387) 297 41.9 0.005 XP_016869902 (OMIM: 601673) PREDICTED: ELAV-like p ( 387) 297 41.9 0.005 XP_011516076 (OMIM: 601673) PREDICTED: ELAV-like p ( 388) 297 41.9 0.005 XP_016869898 (OMIM: 601673) PREDICTED: ELAV-like p ( 388) 297 41.9 0.005 XP_016869899 (OMIM: 601673) PREDICTED: ELAV-like p ( 388) 297 41.9 0.005 XP_016869901 (OMIM: 601673) PREDICTED: ELAV-like p ( 388) 297 41.9 0.005 XP_016869900 (OMIM: 601673) PREDICTED: ELAV-like p ( 388) 297 41.9 0.005 XP_016869897 (OMIM: 601673) PREDICTED: ELAV-like p ( 388) 297 41.9 0.005 XP_006716797 (OMIM: 601673) PREDICTED: ELAV-like p ( 389) 297 41.9 0.005 XP_011516082 (OMIM: 601673) PREDICTED: ELAV-like p ( 389) 297 41.9 0.005 XP_011516081 (OMIM: 601673) PREDICTED: ELAV-like p ( 389) 297 41.9 0.005 XP_006716798 (OMIM: 601673) PREDICTED: ELAV-like p ( 389) 297 41.9 0.005 XP_011516080 (OMIM: 601673) PREDICTED: ELAV-like p ( 392) 297 41.9 0.005 NP_001311138 (OMIM: 168360) ELAV-like protein 4 is ( 352) 294 41.6 0.0057 >>NP_002559 (OMIM: 604679) polyadenylate-binding protein (636 aa) initn: 4211 init1: 4211 opt: 4211 Z-score: 2108.3 bits: 400.3 E(85289): 1.1e-110 Smith-Waterman score: 4211; 100.0% identity (100.0% similar) in 636 aa overlap (1-636:1-636) 10 20 30 40 50 60 pF1KB5 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB5 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB5 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB5 AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFER 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB5 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB5 LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB5 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB5 AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQ 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB5 RVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 RVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQ 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB5 GQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 GQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESP 550 560 570 580 590 600 610 620 630 pF1KB5 ESLRSKVDEAVAVLQAHQAKEAAQKAVNSATGVPTV :::::::::::::::::::::::::::::::::::: NP_002 ESLRSKVDEAVAVLQAHQAKEAAQKAVNSATGVPTV 610 620 630 >>XP_005250918 (OMIM: 604679) PREDICTED: polyadenylate-b (636 aa) initn: 4211 init1: 4211 opt: 4211 Z-score: 2108.3 bits: 400.3 E(85289): 1.1e-110 Smith-Waterman score: 4211; 100.0% identity (100.0% similar) in 636 aa overlap (1-636:1-636) 10 20 30 40 50 60 pF1KB5 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB5 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB5 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB5 AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFER 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB5 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB5 LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB5 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB5 AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQ 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB5 RVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 RVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQ 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB5 GQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESP 550 560 570 580 590 600 610 620 630 pF1KB5 ESLRSKVDEAVAVLQAHQAKEAAQKAVNSATGVPTV :::::::::::::::::::::::::::::::::::: XP_005 ESLRSKVDEAVAVLQAHQAKEAAQKAVNSATGVPTV 610 620 630 >>NP_112241 (OMIM: 604680) polyadenylate-binding protein (631 aa) initn: 3248 init1: 2425 opt: 3818 Z-score: 1914.0 bits: 364.3 E(85289): 7.2e-100 Smith-Waterman score: 3818; 92.0% identity (95.9% similar) in 637 aa overlap (1-636:1-631) 10 20 30 40 50 60 pF1KB5 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ ::::.:::: :::::::::::::::::::::::::::::::.:::.:: : .::::::: NP_112 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB5 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS . :::.:::::::::::::::::::::::::::::::::::.:::::::.::::::: : NP_112 HTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB5 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE ::::::::.::::::::::::::::::.:::::::.:::::::: ::::::.:::::::: NP_112 AFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKERE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB5 AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFER :::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::: NP_112 AELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFER 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB5 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN :::::::::::::::::::::::::::::::::::::: ::::::::::::: ::::::: NP_112 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKN 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB5 LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT :::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::: NP_112 LDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB5 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA ::::::::::::::::.:::.::::::::::::: : ::::::::.:.:::::.: NP_112 KPLYVALAQRKEERQAYLTNEYMQRMASVRAVPN------QRAPPSGYFMTAVPQTQNHA 370 380 390 400 410 430 440 450 460 470 480 pF1KB5 AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQ :::::::::.::::::::::::::::::: :.::::.::: ::::::::::::::::::: NP_112 AYYPPSQIARLRPSPRWTAQGARPHPFQNKPSAIRPGAPRVPFSTMRPASSQVPRVMSTQ 420 430 440 450 460 470 490 500 510 520 530 pF1KB5 RVANTSTQTMGPRPAAAAAAA-TPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHV :::::::::.::::::::::: ::::::::.::::::::::::: :::::::::: :::: NP_112 RVANTSTQTVGPRPAAAAAAAATPAVRTVPRYKYAAGVRNPQQHRNAQPQVTMQQLAVHV 480 490 500 510 520 530 540 550 560 570 580 590 pF1KB5 QGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLES :::: :::: :::::::.:::::::::::::::::::::::::::::::::::::.:::: NP_112 QGQETLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLES 540 550 560 570 580 590 600 610 620 630 pF1KB5 PESLRSKVDEAVAVLQAHQAKEAAQKAVNSATGVPTV :::::::::::::::::::::::.::::::::::::: NP_112 PESLRSKVDEAVAVLQAHQAKEATQKAVNSATGVPTV 600 610 620 630 >>NP_001129126 (OMIM: 603407) polyadenylate-binding prot (631 aa) initn: 3011 init1: 2487 opt: 3255 Z-score: 1635.6 bits: 312.8 E(85289): 2.3e-84 Smith-Waterman score: 3255; 78.8% identity (90.8% similar) in 641 aa overlap (1-631:1-630) 10 20 30 40 50 60 pF1KB5 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ :: .: ::::::::::::: ::::::::::::::::.::::::::::::::::::::::: NP_001 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB5 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS :::::::::::::::::::::.::::::::::::::::::.::::::::::::::::::: NP_001 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB5 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE ::::::::::::::::::::.::::::::::..::::::::::::::::::::::::::: NP_001 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB5 AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFER :::::.::::::::::::::..::: ::.::..:: .:::::: : .::::::::::.:. NP_001 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB5 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN ::::.:::.::::::..:: :.:::::::::::.::::::::.::.::.::::::::.:: NP_001 HEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB5 LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT ::: ::::.:::::::::.:::::::.: :::::::::::::::::::::::::::::.. NP_001 LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 310 320 330 340 350 360 370 380 390 400 410 pF1KB5 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVP-NPVINPYQPAPPSGYFMAAIPQTQNR ::::::::::::::.::::::::::.:..::.: : ..: .::: .:::. :.::.:.: NP_001 KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGR 370 380 390 400 410 420 430 440 450 460 470 pF1KB5 AAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRP-----ASSQVP :: :.:.::.::.::: ::.::. ::.::.::: ..::: . . : :: .: NP_001 PPYYTPNQLAQMRPNPRWQ-QGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLP 420 430 440 450 460 470 480 490 500 510 520 530 pF1KB5 RVMSTQRVA-NTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ .::::. :..:...:: ::.:::.: :.: ::::..::.: : :: . NP_001 T--TTQRVGVPTAVQNLAPR--AAVAAAAP--RAVAPYKYASSVRSP--HPAIQP-LQAP 480 490 500 510 520 540 550 560 570 580 590 pF1KB5 QPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSEL ::::::::::::::::::.:::::::::::::::::::.:: .::::::::::::::::: NP_001 QPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSEL 530 540 550 560 570 580 600 610 620 630 pF1KB5 LHMLESPESLRSKVDEAVAVLQAHQAK-EAAQK--AVNSATGVPTV ::::::::::::::::::::::::.:: ::::: :: .:: NP_001 LHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS 590 600 610 620 630 >>NP_003810 (OMIM: 603407) polyadenylate-binding protein (644 aa) initn: 3011 init1: 2487 opt: 2648 Z-score: 1335.4 bits: 257.3 E(85289): 1.2e-67 Smith-Waterman score: 3232; 77.2% identity (89.2% similar) in 650 aa overlap (1-631:1-643) 10 20 30 40 50 60 pF1KB5 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ :: .: ::::::::::::: ::::::::::::::::.::::::::::::::::::::::: NP_003 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB5 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS :::::::::::::::::::::.::::::::::::::::::.::::::::::::::::::: NP_003 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB5 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE ::::::::::::::::::::.::::::::::..::::::::::::::::::::::::::: NP_003 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB5 AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFER :::::.::::::::::::::..::: ::.::..:: .:::::: : .::::::::::.:. NP_003 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB5 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN ::::.:::.::::::..:: :.:::::::::::.::::::::.::.::.::::::::.:: NP_003 HEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB5 LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT ::: ::::.:::::::::.:::::::.: :::::::::::::::::::::::::::::.. NP_003 LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 310 320 330 340 350 360 370 380 390 400 410 pF1KB5 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVP-NPVINPYQPAPPSGYFMAAIPQTQNR ::::::::::::::.::::::::::.:..::.: : ..: .::: .:::. :.::.:.: NP_003 KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGR 370 380 390 400 410 420 430 440 450 460 470 pF1KB5 AAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMS- :: :.:.::.::.::: ::.::. ::.::.::: ..::: . . :..:. : .. NP_003 PPYYTPNQLAQMRPNPRWQ-QGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGSECPDRLAM 420 430 440 450 460 470 480 490 500 510 520 pF1KB5 -------TQRVANTSTQTMG-PR------PAAAAAAATPAVRTVPQYKYAAGVRNPQQHL .:. . : :. : : : ::.:::.: :.: ::::..::.: : NP_003 DFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAP--RAVAPYKYASSVRSP--HP 480 490 500 510 520 530 530 540 550 560 570 580 pF1KB5 NAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGM :: . ::::::::::::::::::.:::::::::::::::::::.:: .:::::::: NP_003 AIQP-LQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGM 540 550 560 570 580 590 590 600 610 620 630 pF1KB5 LLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAK-EAAQK--AVNSATGVPTV :::::::::::::::::::::::::::::::::.:: ::::: :: .:: NP_003 LLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS 600 610 620 630 640 >>NP_001129125 (OMIM: 603407) polyadenylate-binding prot (660 aa) initn: 3391 init1: 2487 opt: 2646 Z-score: 1334.3 bits: 257.1 E(85289): 1.4e-67 Smith-Waterman score: 3200; 75.4% identity (87.0% similar) in 670 aa overlap (1-631:1-659) 10 20 30 40 50 60 pF1KB5 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ :: .: ::::::::::::: ::::::::::::::::.::::::::::::::::::::::: NP_001 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB5 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS :::::::::::::::::::::.::::::::::::::::::.::::::::::::::::::: NP_001 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB5 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE ::::::::::::::::::::.::::::::::..::::::::::::::::::::::::::: NP_001 AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB5 AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFER :::::.::::::::::::::..::: ::.::..:: .:::::: : .::::::::::.:. NP_001 AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB5 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN ::::.:::.::::::..:: :.:::::::::::.::::::::.::.::.::::::::.:: NP_001 HEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB5 LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT ::: ::::.:::::::::.:::::::.: :::::::::::::::::::::::::::::.. NP_001 LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 310 320 330 340 350 360 370 380 390 400 410 pF1KB5 KPLYVALAQRKEERQAHLTNQYMQRMASVRAVP-NPVINPYQPAPPSGYFMAAIPQTQNR ::::::::::::::.::::::::::.:..::.: : ..: .::: .:::. :.::.:.: NP_001 KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGR 370 380 390 400 410 420 430 440 450 460 470 pF1KB5 AAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRP-----ASSQVP :: :.:.::.::.::: ::.::. ::.::.::: ..::: . . : :: .: NP_001 PPYYTPNQLAQMRPNPRWQ-QGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLP 420 430 440 450 460 470 480 490 500 pF1KB5 RVMSTQRVAN------------------------------TSTQTMGPRPAAAAAAATPA .::::.. :..:...:: ::.:::.: NP_001 T--TTQRVGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPR--AAVAAAAP- 480 490 500 510 520 530 510 520 530 540 550 560 pF1KB5 VRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQMLGE :.: ::::..::.: : :: . ::::::::::::::::::.:::::::::::: NP_001 -RAVAPYKYASSVRSP--HPAIQP-LQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGE 540 550 560 570 580 570 580 590 600 610 620 pF1KB5 RLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAK-EAA :::::::.:: .:::::::::::::::::::::::::::::::::::::::::.:: ::: NP_001 RLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAA 590 600 610 620 630 640 630 pF1KB5 QK--AVNSATGVPTV :: :: .:: NP_001 QKVGAVAAATS 650 660 >>NP_543022 (OMIM: 300407) polyadenylate-binding protein (382 aa) initn: 1791 init1: 838 opt: 1606 Z-score: 822.7 bits: 161.7 E(85289): 4.4e-39 Smith-Waterman score: 1606; 64.3% identity (84.5% similar) in 373 aa overlap (2-371:7-379) 10 20 30 40 50 pF1KB5 MNPSAPS--YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLG ::.. . : :.:::::: ::::: :::.:: ::::. :.::: .:: :: NP_543 MGSGEPNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLG 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB5 YAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNK :.::::. ::::: ::.:::::.:.::: :.:::: : ::::::::::::::::::::. NP_543 YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNR 70 80 90 100 110 120 120 130 140 150 160 170 pF1KB5 ALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF ::. :::::::::::::::.::::::..:::.. ::.::: .:::. ::.:.:.:::: NP_543 ALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRF 130 140 150 160 170 180 180 190 200 210 220 230 pF1KB5 KSRKEREAELGARAKE-FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG : .:: ::. .: . ::::..::.:.:.:::.::.:: ..::. ::::. : :::::: NP_543 KFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKG 190 200 210 220 230 240 240 250 260 270 280 290 pF1KB5 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQ :::: .: :: ::::: ...:: ..:: .::::::::.:: .::.:.::... . .: NP_543 FGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPP 250 260 270 280 290 300 300 310 320 330 340 350 pF1KB5 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTE :: .:.::::. :.::.:..::: ::.:. :::::: :..:::: ::::: ::::::: : NP_543 GVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDE 310 320 330 340 350 360 360 370 380 390 400 410 pF1KB5 MNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAA ::::::..:::.:.:.: . NP_543 MNGRIVGSKPLHVTLGQARRRC 370 380 >>NP_005841 (OMIM: 154400,605593) splicing factor 3B sub (424 aa) initn: 434 init1: 183 opt: 402 Z-score: 226.9 bits: 51.6 E(85289): 6.8e-06 Smith-Waterman score: 402; 39.9% identity (67.8% similar) in 183 aa overlap (11-189:13-192) 10 20 30 40 50 pF1KB5 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVN :..::: : :.: .:.: : :::... .. .: .: . ::..:. NP_005 MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVE 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB5 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFIKNLDKSIDNKALYD : . ::. :. ::. . :::.:. .. . .. :: :::: ::: ::.: ::: NP_005 FLSEEDADYAIKIMNMIKLYGKPIRV--NKASAHNKNLDVGANIFIGNLDPEIDEKLLYD 70 80 90 100 110 120 130 140 150 160 170 pF1KB5 TFSAFGNILSC-KVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK :::::: ::. :.. : . .::::.:..: . .:.. ::: :::. : .: . :. . NP_005 TFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS-YA 120 130 140 150 160 170 180 190 200 210 220 230 pF1KB5 SRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFG .:. ..: . : : NP_005 FKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGM 180 190 200 210 220 230 >>NP_001310894 (OMIM: 603413) nucleolysin TIAR isoform 3 (252 aa) initn: 344 init1: 147 opt: 295 Z-score: 176.4 bits: 41.5 E(85289): 0.0043 Smith-Waterman score: 295; 30.4% identity (58.0% similar) in 250 aa overlap (218-456:1-238) 190 200 210 220 230 240 pF1KB5 KEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQK ....:. : .:::::.::::: . ::.. NP_001 MDARVVKDMATGKSKGYGFVSFYNKLDAEN 10 20 30 250 260 270 280 290 300 pF1KB5 AVDEMNGKELNGKQIYVGRAQKKVER-QTELKRKFEQMK-QDRITRYQGVN--LYVKNLD :. .:.:. :.:.:: .. : .: .. . . .:.. .: ... . : .: .. NP_001 AIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIA 40 50 60 70 80 90 310 320 330 340 350 360 pF1KB5 DGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP .:. :. .:. ::::: : .:. : ::..:: ::. : :..:.. .:: . . NP_001 SGLTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGH- 100 110 120 130 140 370 380 390 400 410 420 pF1KB5 LYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVI-NPYQPAPPSGYFMAAIPQTQNRAA : :: . .:....: : . . : :: : : .:: :. .. NP_001 -VVKCYWGKE--SPDMTKNFQQVDYSQWGQWSQVYGNPQQ----YGQYMANGWQVPPYGV 150 160 170 180 190 430 440 450 460 470 pF1KB5 YYPP-SQIA---QLRPSPRWTAQ-GARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRV : : .: . . :: : . ::.: : : .: : NP_001 YGQPWNQQGFGVDQSPSAAWMGGFGAQPPQGQAPPPVIPPPNQAGYGMASYQTQ 200 210 220 230 240 250 480 490 500 510 520 530 pF1KB5 MSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPA >>NP_001310893 (OMIM: 603413) nucleolysin TIAR isoform 3 (252 aa) initn: 344 init1: 147 opt: 295 Z-score: 176.4 bits: 41.5 E(85289): 0.0043 Smith-Waterman score: 295; 30.4% identity (58.0% similar) in 250 aa overlap (218-456:1-238) 190 200 210 220 230 240 pF1KB5 KEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQK ....:. : .:::::.::::: . ::.. NP_001 MDARVVKDMATGKSKGYGFVSFYNKLDAEN 10 20 30 250 260 270 280 290 300 pF1KB5 AVDEMNGKELNGKQIYVGRAQKKVER-QTELKRKFEQMK-QDRITRYQGVN--LYVKNLD :. .:.:. :.:.:: .. : .: .. . . .:.. .: ... . : .: .. NP_001 AIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIA 40 50 60 70 80 90 310 320 330 340 350 360 pF1KB5 DGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP .:. :. .:. ::::: : .:. : ::..:: ::. : :..:.. .:: . . NP_001 SGLTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGH- 100 110 120 130 140 370 380 390 400 410 420 pF1KB5 LYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVI-NPYQPAPPSGYFMAAIPQTQNRAA : :: . .:....: : . . : :: : : .:: :. .. NP_001 -VVKCYWGKE--SPDMTKNFQQVDYSQWGQWSQVYGNPQQ----YGQYMANGWQVPPYGV 150 160 170 180 190 430 440 450 460 470 pF1KB5 YYPP-SQIA---QLRPSPRWTAQ-GARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRV : : .: . . :: : . ::.: : : .: : NP_001 YGQPWNQQGFGVDQSPSAAWMGGFGAQPPQGQAPPPVIPPPNQAGYGMASYQTQ 200 210 220 230 240 250 480 490 500 510 520 530 pF1KB5 MSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPA 636 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Thu Nov 3 18:01:39 2016 done: Thu Nov 3 18:01:40 2016 Total Scan time: 7.720 Total Display time: 0.100 Function used was FASTA [36.3.4 Apr, 2011]