FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5714, 721 aa
  1>>>pF1KB5714 721 - 721 aa - 721 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1237+/-0.00109; mu= 15.0258+/- 0.065
 mean_var=62.5143+/-12.280, 0's: 0 Z-trim(100.9): 42  B-trim: 2 in 1/51
 Lambda= 0.162213
 statistics sampled from 6304 (6318) to 6304 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.539), E-opt: 0.2 (0.194), width:  16
 Scan time:  3.630

The best scores are:                                      opt bits E(32554)
CCDS32451.1 BBS2 gene_id:583|Hs108|chr16           ( 721) 4705 1110.3       0


>>CCDS32451.1 BBS2 gene_id:583|Hs108|chr16                (721 aa)
 initn: 4705 init1: 4705 opt: 4705  Z-score: 5943.5  bits: 1110.3 E(32554):    0
Smith-Waterman score: 4705; 99.9% identity (100.0% similar) in 721 aa overlap (1-721:1-721)

               10        20        30        40        50        60
pF1KB5 MLLPVFTLKLRHKISPRMVAIGRYDGTHPCLAAATQTGKVFIHNPHTRNQHVSASRVFQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MLLPVFTLKLRHKISPRMVAIGRYDGTHPCLAAATQTGKVFIHNPHTRNQHVSASRVFQS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 PLESDVSLLNINQAVSCLTAGVLNPELGYDALLVGTQTNLLAYDVYNNSDLFYREVADGA
       :::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PLESDVSLLSINQAVSCLTAGVLNPELGYDALLVGTQTNLLAYDVYNNSDLFYREVADGA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 NAIVLGTLGDISSPLAIIGGNCALQGFNHEGSDLFWTVTGDNVNSLALCDFDGDGKKELL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NAIVLGTLGDISSPLAIIGGNCALQGFNHEGSDLFWTVTGDNVNSLALCDFDGDGKKELL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 VGSEDFDIRVFKEDEIVAEMTETEIVTSLCPMYGSRFGYALSNGTVGVYDKTSRYWRIKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VGSEDFDIRVFKEDEIVAEMTETEIVTSLCPMYGSRFGYALSNGTVGVYDKTSRYWRIKS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 KNHAMSIHAFDLNSDGVNELITGWSNGKVDARSDRTGEVIFKDNFSSAIAGVVEGDYRMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KNHAMSIHAFDLNSDGVNELITGWSNGKVDARSDRTGEVIFKDNFSSAIAGVVEGDYRMD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 GHIQLICCSVDGEIRGYLPGTAEMRGNLMDTSAEQDLIRELSQKKQNLLLELRNYEENAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GHIQLICCSVDGEIRGYLPGTAEMRGNLMDTSAEQDLIRELSQKKQNLLLELRNYEENAK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 AELASPLNEADGHRGIIPANTRLHTTLSVSLGNETQTAHTELRISTSNDTIIRAVLIFAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AELASPLNEADGHRGIIPANTRLHTTLSVSLGNETQTAHTELRISTSNDTIIRAVLIFAE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 GIFTGESHVVHPSIHNLSSSICIPIVPPKDVPVDLHLKAFVGYRSSTQFHVFESTRQLPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GIFTGESHVVHPSIHNLSSSICIPIVPPKDVPVDLHLKAFVGYRSSTQFHVFESTRQLPR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 FSMYALTSLDPASEPISYVNFTIAERAQRVVVWLGQNFLLPEDTHIQNAPFQVCFTSLRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FSMYALTSLDPASEPISYVNFTIAERAQRVVVWLGQNFLLPEDTHIQNAPFQVCFTSLRN
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB5 GGHLHIKIKLSGEITINTDDIDLAGDIIQSMASFFAIEDLQVEADFPVYFEELRKVLVKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GGHLHIKIKLSGEITINTDDIDLAGDIIQSMASFFAIEDLQVEADFPVYFEELRKVLVKV
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB5 DEYHSVHQKLSADMADHSNLIRSLLVGAEDARLMRDMKTMKSRYMELYDLNRDLLNGYKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DEYHSVHQKLSADMADHSNLIRSLLVGAEDARLMRDMKTMKSRYMELYDLNRDLLNGYKI
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB5 RCNNHTELLGNLKAVNQAIQRAGRLRVGKPKNQVITACRDAIRSNNINTLFKIMRVGTAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RCNNHTELLGNLKAVNQAIQRAGRLRVGKPKNQVITACRDAIRSNNINTLFKIMRVGTAS
              670       680       690       700       710       720

        
pF1KB5 S
       :
CCDS32 S
        




721 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 16:10:17 2016 done: Sat Nov  5 16:10:18 2016
 Total Scan time:  3.630 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]