Result of FASTA (omim) for
pF1KB5714
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5714, 721 aa
1>>>pF1KB5714 721 - 721 aa - 721 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7199+/-0.000475; mu= 17.6176+/- 0.029
mean_var=67.1157+/-13.429, 0's: 0 Z-trim(107.7): 46 B-trim: 114 in 1/53
Lambda= 0.156553
statistics sampled from 15793 (15813) to 15793 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.521), E-opt: 0.2 (0.185), width: 16
Scan time: 11.230
The best scores are: opt bits E(85289)
NP_114091 (OMIM: 606151,615981,616562) Bardet-Bied ( 721) 4711 1073.8 0
XP_005256137 (OMIM: 606151,615981,616562) PREDICTE ( 721) 4705 1072.4 0
>>NP_114091 (OMIM: 606151,615981,616562) Bardet-Biedl sy (721 aa)
initn: 4711 init1: 4711 opt: 4711 Z-score: 5746.1 bits: 1073.8 E(85289): 0
Smith-Waterman score: 4711; 100.0% identity (100.0% similar) in 721 aa overlap (1-721:1-721)
10 20 30 40 50 60
pF1KB5 MLLPVFTLKLRHKISPRMVAIGRYDGTHPCLAAATQTGKVFIHNPHTRNQHVSASRVFQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 MLLPVFTLKLRHKISPRMVAIGRYDGTHPCLAAATQTGKVFIHNPHTRNQHVSASRVFQS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 PLESDVSLLNINQAVSCLTAGVLNPELGYDALLVGTQTNLLAYDVYNNSDLFYREVADGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 PLESDVSLLNINQAVSCLTAGVLNPELGYDALLVGTQTNLLAYDVYNNSDLFYREVADGA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 NAIVLGTLGDISSPLAIIGGNCALQGFNHEGSDLFWTVTGDNVNSLALCDFDGDGKKELL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 NAIVLGTLGDISSPLAIIGGNCALQGFNHEGSDLFWTVTGDNVNSLALCDFDGDGKKELL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 VGSEDFDIRVFKEDEIVAEMTETEIVTSLCPMYGSRFGYALSNGTVGVYDKTSRYWRIKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 VGSEDFDIRVFKEDEIVAEMTETEIVTSLCPMYGSRFGYALSNGTVGVYDKTSRYWRIKS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 KNHAMSIHAFDLNSDGVNELITGWSNGKVDARSDRTGEVIFKDNFSSAIAGVVEGDYRMD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 KNHAMSIHAFDLNSDGVNELITGWSNGKVDARSDRTGEVIFKDNFSSAIAGVVEGDYRMD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 GHIQLICCSVDGEIRGYLPGTAEMRGNLMDTSAEQDLIRELSQKKQNLLLELRNYEENAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 GHIQLICCSVDGEIRGYLPGTAEMRGNLMDTSAEQDLIRELSQKKQNLLLELRNYEENAK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 AELASPLNEADGHRGIIPANTRLHTTLSVSLGNETQTAHTELRISTSNDTIIRAVLIFAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 AELASPLNEADGHRGIIPANTRLHTTLSVSLGNETQTAHTELRISTSNDTIIRAVLIFAE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 GIFTGESHVVHPSIHNLSSSICIPIVPPKDVPVDLHLKAFVGYRSSTQFHVFESTRQLPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 GIFTGESHVVHPSIHNLSSSICIPIVPPKDVPVDLHLKAFVGYRSSTQFHVFESTRQLPR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 FSMYALTSLDPASEPISYVNFTIAERAQRVVVWLGQNFLLPEDTHIQNAPFQVCFTSLRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 FSMYALTSLDPASEPISYVNFTIAERAQRVVVWLGQNFLLPEDTHIQNAPFQVCFTSLRN
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB5 GGHLHIKIKLSGEITINTDDIDLAGDIIQSMASFFAIEDLQVEADFPVYFEELRKVLVKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 GGHLHIKIKLSGEITINTDDIDLAGDIIQSMASFFAIEDLQVEADFPVYFEELRKVLVKV
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB5 DEYHSVHQKLSADMADHSNLIRSLLVGAEDARLMRDMKTMKSRYMELYDLNRDLLNGYKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 DEYHSVHQKLSADMADHSNLIRSLLVGAEDARLMRDMKTMKSRYMELYDLNRDLLNGYKI
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB5 RCNNHTELLGNLKAVNQAIQRAGRLRVGKPKNQVITACRDAIRSNNINTLFKIMRVGTAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 RCNNHTELLGNLKAVNQAIQRAGRLRVGKPKNQVITACRDAIRSNNINTLFKIMRVGTAS
670 680 690 700 710 720
pF1KB5 S
:
NP_114 S
>>XP_005256137 (OMIM: 606151,615981,616562) PREDICTED: B (721 aa)
initn: 4705 init1: 4705 opt: 4705 Z-score: 5738.8 bits: 1072.4 E(85289): 0
Smith-Waterman score: 4705; 99.9% identity (100.0% similar) in 721 aa overlap (1-721:1-721)
10 20 30 40 50 60
pF1KB5 MLLPVFTLKLRHKISPRMVAIGRYDGTHPCLAAATQTGKVFIHNPHTRNQHVSASRVFQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MLLPVFTLKLRHKISPRMVAIGRYDGTHPCLAAATQTGKVFIHNPHTRNQHVSASRVFQS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 PLESDVSLLNINQAVSCLTAGVLNPELGYDALLVGTQTNLLAYDVYNNSDLFYREVADGA
:::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PLESDVSLLSINQAVSCLTAGVLNPELGYDALLVGTQTNLLAYDVYNNSDLFYREVADGA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 NAIVLGTLGDISSPLAIIGGNCALQGFNHEGSDLFWTVTGDNVNSLALCDFDGDGKKELL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NAIVLGTLGDISSPLAIIGGNCALQGFNHEGSDLFWTVTGDNVNSLALCDFDGDGKKELL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 VGSEDFDIRVFKEDEIVAEMTETEIVTSLCPMYGSRFGYALSNGTVGVYDKTSRYWRIKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VGSEDFDIRVFKEDEIVAEMTETEIVTSLCPMYGSRFGYALSNGTVGVYDKTSRYWRIKS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 KNHAMSIHAFDLNSDGVNELITGWSNGKVDARSDRTGEVIFKDNFSSAIAGVVEGDYRMD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KNHAMSIHAFDLNSDGVNELITGWSNGKVDARSDRTGEVIFKDNFSSAIAGVVEGDYRMD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 GHIQLICCSVDGEIRGYLPGTAEMRGNLMDTSAEQDLIRELSQKKQNLLLELRNYEENAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GHIQLICCSVDGEIRGYLPGTAEMRGNLMDTSAEQDLIRELSQKKQNLLLELRNYEENAK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 AELASPLNEADGHRGIIPANTRLHTTLSVSLGNETQTAHTELRISTSNDTIIRAVLIFAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AELASPLNEADGHRGIIPANTRLHTTLSVSLGNETQTAHTELRISTSNDTIIRAVLIFAE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 GIFTGESHVVHPSIHNLSSSICIPIVPPKDVPVDLHLKAFVGYRSSTQFHVFESTRQLPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GIFTGESHVVHPSIHNLSSSICIPIVPPKDVPVDLHLKAFVGYRSSTQFHVFESTRQLPR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 FSMYALTSLDPASEPISYVNFTIAERAQRVVVWLGQNFLLPEDTHIQNAPFQVCFTSLRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FSMYALTSLDPASEPISYVNFTIAERAQRVVVWLGQNFLLPEDTHIQNAPFQVCFTSLRN
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB5 GGHLHIKIKLSGEITINTDDIDLAGDIIQSMASFFAIEDLQVEADFPVYFEELRKVLVKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GGHLHIKIKLSGEITINTDDIDLAGDIIQSMASFFAIEDLQVEADFPVYFEELRKVLVKV
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB5 DEYHSVHQKLSADMADHSNLIRSLLVGAEDARLMRDMKTMKSRYMELYDLNRDLLNGYKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DEYHSVHQKLSADMADHSNLIRSLLVGAEDARLMRDMKTMKSRYMELYDLNRDLLNGYKI
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB5 RCNNHTELLGNLKAVNQAIQRAGRLRVGKPKNQVITACRDAIRSNNINTLFKIMRVGTAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RCNNHTELLGNLKAVNQAIQRAGRLRVGKPKNQVITACRDAIRSNNINTLFKIMRVGTAS
670 680 690 700 710 720
pF1KB5 S
:
XP_005 S
721 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 16:10:18 2016 done: Sat Nov 5 16:10:20 2016
Total Scan time: 11.230 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]