Result of FASTA (ccds) for
pF1KB5738
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5738, 740 aa
1>>>pF1KB5738 740 - 740 aa - 740 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.2634+/-0.00104; mu= 14.5443+/- 0.061
mean_var=75.7186+/-14.920, 0's: 0 Z-trim(103.4): 80 B-trim: 3 in 1/48
Lambda= 0.147392
statistics sampled from 7315 (7399) to 7315 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.59), E-opt: 0.2 (0.227), width: 16
Scan time: 2.580
The best scores are: opt bits E(32554)
CCDS1686.1 DDX1 gene_id:1653|Hs108|chr2 ( 740) 5029 1079.5 0
CCDS6951.1 DDX31 gene_id:64794|Hs108|chr9 ( 851) 374 89.7 2.1e-17
CCDS12577.1 HNRNPUL1 gene_id:11100|Hs108|chr19 ( 756) 349 84.4 7.4e-16
CCDS82351.1 HNRNPUL1 gene_id:11100|Hs108|chr19 ( 767) 349 84.4 7.5e-16
CCDS12576.1 HNRNPUL1 gene_id:11100|Hs108|chr19 ( 856) 349 84.4 8.3e-16
CCDS41659.1 HNRNPUL2 gene_id:221092|Hs108|chr11 ( 747) 330 80.3 1.2e-14
CCDS30964.1 DDX59 gene_id:83479|Hs108|chr1 ( 619) 306 75.2 3.5e-13
CCDS31081.1 HNRNPU gene_id:3192|Hs108|chr1 ( 806) 280 69.7 2e-11
CCDS41479.1 HNRNPU gene_id:3192|Hs108|chr1 ( 825) 280 69.7 2.1e-11
CCDS33758.1 RNF123 gene_id:63891|Hs108|chr3 (1314) 282 70.2 2.4e-11
CCDS4977.1 DDX43 gene_id:55510|Hs108|chr6 ( 648) 274 68.4 4e-11
CCDS55404.1 DDX3X gene_id:1654|Hs108|chrX ( 646) 270 67.5 7.3e-11
CCDS3282.1 EIF4A2 gene_id:1974|Hs108|chr3 ( 407) 267 66.9 7.4e-11
CCDS43931.1 DDX3X gene_id:1654|Hs108|chrX ( 662) 270 67.5 7.4e-11
CCDS14782.1 DDX3Y gene_id:8653|Hs108|chrY ( 660) 268 67.1 9.9e-11
>>CCDS1686.1 DDX1 gene_id:1653|Hs108|chr2 (740 aa)
initn: 5029 init1: 5029 opt: 5029 Z-score: 5776.7 bits: 1079.5 E(32554): 0
Smith-Waterman score: 5029; 100.0% identity (100.0% similar) in 740 aa overlap (1-740:1-740)
10 20 30 40 50 60
pF1KB5 MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB5 SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB5 HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB5 EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEK
670 680 690 700 710 720
730 740
pF1KB5 EAQTSFLHLGYLPNQLFRTF
::::::::::::::::::::
CCDS16 EAQTSFLHLGYLPNQLFRTF
730 740
>>CCDS6951.1 DDX31 gene_id:64794|Hs108|chr9 (851 aa)
initn: 431 init1: 175 opt: 374 Z-score: 426.1 bits: 89.7 E(32554): 2.1e-17
Smith-Waterman score: 382; 25.0% identity (59.8% similar) in 376 aa overlap (266-626:289-640)
240 250 260 270 280 290
pF1KB5 AELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPS
.:.: .. .... .. ..: ::.. :.
CCDS69 KQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRS----DGPYALVLVPT
260 270 280 290 300 310
300 310 320 330 340 350
pF1KB5 RELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRL-DDLV
:::: :........ : . . ...:: ... . :..:..:...::::: : .
CCDS69 RELALQSFDTVQKLLKPFT--WIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIK
320 330 340 350 360 370
360 370 380 390 400 410
pF1KB5 STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFD
:: ....:..:.::.:::: .:. :. :. . : :... .. : .. :::: .
CCDS69 STKNIHFSRLRWLVFDEADRILDLGFEKDITVILNA---VNAECQKRQNVLLSATL-TEG
380 390 400 410 420
420 430 440 450 460 470
pF1KB5 VKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK-SHIRTDDVHAKD
: .:.. .: :. . :: : : .::: . : . . :. .
CCDS69 VTRLADISLHDPVSI------SVLDKSHD---QLNPKDKAVQEVCPPPAGDKLDSFAIPE
430 440 450 460 470
480 490 500 510 520
pF1KB5 NTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE-------QYF
. . .. . :. . . . .. : .. .. ..: . :. .: : .
CCDS69 SLKQHVTV--VPSKLRLVCLAAFILQKCKFEEDQKMVVFFSS---CELVEFHYSLFLQTL
480 490 500 510 520 530
530 540 550 560 570 580
pF1KB5 IQQGGGP-----DKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI
....:.: . . ... . ::: . .:: ...:... :.::::::::.:.
CCDS69 LSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCTDVAARGLDL
540 550 560 570 580 590
590 600 610 620 630 640
pF1KB5 HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA-TEKEKVWYHVCSSRGKGCYN
: .... . :. .:.:::::..: : .. ..: .: : :
CCDS69 PQVTWIVQYNAPSSPAEYIHRIGRTARIGCHGSSLLILAPSEAEYVNSLASHKINVSEIK
600 610 620 630 640 650
650 660 670 680 690 700
pF1KB5 TRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGS
CCDS69 MEDILCVLTRDDCFKGKRWGAQKSHAVGPQEIRERATVLQTVFEDYVHSSERRVSWAKKA
660 670 680 690 700 710
>>CCDS12577.1 HNRNPUL1 gene_id:11100|Hs108|chr19 (756 aa)
initn: 350 init1: 210 opt: 349 Z-score: 398.2 bits: 84.4 E(32554): 7.4e-16
Smith-Waterman score: 385; 25.4% identity (57.7% similar) in 366 aa overlap (97-439:127-469)
70 80 90 100 110 120
pF1KB5 TLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATK
::.:.. . .:. . : : ::.
CCDS12 PPAEEDEDDFDDTLVAIDTYNCDLHFKVARDRSSGYPLTIEGF------AYLWSGARASY
100 110 120 130 140 150
130 140 150 160 170
pF1KB5 GLMKGKHYYEVSCH-------------DQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKK
:. .:. .:.. . : . :.::: . : .:: . :..:.::::::
CCDS12 GVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKK
160 170 180 190 200 210
180 190 200 210 220
pF1KB5 SHNKQFDNYGEEFTMHDTIGCYLDIDKGH---VKFSKNGKDLGLAFEIPPH-MKNQALFP
: :..:.:::..:. .:.:::. :.. :. ..:.:::: .:.::.: . . .:::.:
CCDS12 STNSRFENYGDKFAENDVIGCFADFECGNDVELSFTKNGKWMGIAFRIQKEALGGQALYP
220 230 240 250 260 270
230 240 250 260 270 280
pF1KB5 ACVLKNAELKFNFGEEEFKF-PPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPK
..:: ..::::.. . ::. ... : . ... : . .. ..:
CCDS12 HVLVKNCAVEFNFGQRAEPYCSVLPGFTFIQHLPLSERIRGT-VGPKSKAECEIL-----
280 290 300 310 320
290 300 310 320 330 340
pF1KB5 ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG
.. :. : .: ::. .::. .. :.: : :.. :. :. . :
CCDS12 MMVGLPA---AGKTTWAIKH---AASNPS-KKYNILGTNAIMDKMRVM--GLRRQRNYAG
330 340 350 360 370
350 360 370 380 390 400
pF1KB5 RLDDLVSTGKLNLSQ-VRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS
: : :.. . :.. ... . . . .:.: .. . . . . .: ...:
CCDS12 RWDVLIQQATQCLNRLIQIAARKKRNYILDQ--TNVYGSAQRRKMRPFEGFQRKAIVICP
380 390 400 410 420 430
410 420 430 440 450 460
pF1KB5 AT--LHSFDVKKLSEKIMHFP--TWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH
. :.. .:. .:. : . ...:.. ..::
CCDS12 TDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVLFIELQREEADKLVRQ
440 450 460 470 480 490
470 480 490 500 510 520
pF1KB5 IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE
CCDS12 YNEEGRKAGPPPEKRFDNRGGGGFRGRGGGGGFQRYENRGPPGGNRGGFQNRGGGSGGGG
500 510 520 530 540 550
>>CCDS82351.1 HNRNPUL1 gene_id:11100|Hs108|chr19 (767 aa)
initn: 350 init1: 210 opt: 349 Z-score: 398.1 bits: 84.4 E(32554): 7.5e-16
Smith-Waterman score: 385; 25.4% identity (57.7% similar) in 366 aa overlap (97-439:138-480)
70 80 90 100 110 120
pF1KB5 TLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATK
::.:.. . .:. . : : ::.
CCDS82 PPAEEDEDDFDDTLVAIDTYNCDLHFKVARDRSSGYPLTIEGF------AYLWSGARASY
110 120 130 140 150 160
130 140 150 160 170
pF1KB5 GLMKGKHYYEVSCH-------------DQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKK
:. .:. .:.. . : . :.::: . : .:: . :..:.::::::
CCDS82 GVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKK
170 180 190 200 210 220
180 190 200 210 220
pF1KB5 SHNKQFDNYGEEFTMHDTIGCYLDIDKGH---VKFSKNGKDLGLAFEIPPH-MKNQALFP
: :..:.:::..:. .:.:::. :.. :. ..:.:::: .:.::.: . . .:::.:
CCDS82 STNSRFENYGDKFAENDVIGCFADFECGNDVELSFTKNGKWMGIAFRIQKEALGGQALYP
230 240 250 260 270 280
230 240 250 260 270 280
pF1KB5 ACVLKNAELKFNFGEEEFKF-PPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPK
..:: ..::::.. . ::. ... : . ... : . .. ..:
CCDS82 HVLVKNCAVEFNFGQRAEPYCSVLPGFTFIQHLPLSERIRGT-VGPKSKAECEIL-----
290 300 310 320 330
290 300 310 320 330 340
pF1KB5 ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG
.. :. : .: ::. .::. .. :.: : :.. :. :. . :
CCDS82 MMVGLPA---AGKTTWAIKH---AASNPS-KKYNILGTNAIMDKMRVM--GLRRQRNYAG
340 350 360 370 380
350 360 370 380 390 400
pF1KB5 RLDDLVSTGKLNLSQ-VRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS
: : :.. . :.. ... . . . .:.: .. . . . . .: ...:
CCDS82 RWDVLIQQATQCLNRLIQIAARKKRNYILDQ--TNVYGSAQRRKMRPFEGFQRKAIVICP
390 400 410 420 430 440
410 420 430 440 450 460
pF1KB5 AT--LHSFDVKKLSEKIMHFP--TWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH
. :.. .:. .:. : . ...:.. ..::
CCDS82 TDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVLFIELQREEADKLVRQ
450 460 470 480 490 500
470 480 490 500 510 520
pF1KB5 IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE
CCDS82 YNEEGRKAGPPPEKRFDNRGGGGFRGRGGGGGFQRYENRGPPGGNRGGFQNRGGGSGGGG
510 520 530 540 550 560
>>CCDS12576.1 HNRNPUL1 gene_id:11100|Hs108|chr19 (856 aa)
initn: 350 init1: 210 opt: 349 Z-score: 397.3 bits: 84.4 E(32554): 8.3e-16
Smith-Waterman score: 385; 25.4% identity (57.7% similar) in 366 aa overlap (97-439:227-569)
70 80 90 100 110 120
pF1KB5 TLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATK
::.:.. . .:. . : : ::.
CCDS12 PPAEEDEDDFDDTLVAIDTYNCDLHFKVARDRSSGYPLTIEGF------AYLWSGARASY
200 210 220 230 240 250
130 140 150 160 170
pF1KB5 GLMKGKHYYEVSCH-------------DQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKK
:. .:. .:.. . : . :.::: . : .:: . :..:.::::::
CCDS12 GVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKK
260 270 280 290 300 310
180 190 200 210 220
pF1KB5 SHNKQFDNYGEEFTMHDTIGCYLDIDKGH---VKFSKNGKDLGLAFEIPPH-MKNQALFP
: :..:.:::..:. .:.:::. :.. :. ..:.:::: .:.::.: . . .:::.:
CCDS12 STNSRFENYGDKFAENDVIGCFADFECGNDVELSFTKNGKWMGIAFRIQKEALGGQALYP
320 330 340 350 360 370
230 240 250 260 270 280
pF1KB5 ACVLKNAELKFNFGEEEFKF-PPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPK
..:: ..::::.. . ::. ... : . ... : . .. ..:
CCDS12 HVLVKNCAVEFNFGQRAEPYCSVLPGFTFIQHLPLSERIRGT-VGPKSKAECEIL-----
380 390 400 410 420
290 300 310 320 330 340
pF1KB5 ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG
.. :. : .: ::. .::. .. :.: : :.. :. :. . :
CCDS12 MMVGLPA---AGKTTWAIKH---AASNPS-KKYNILGTNAIMDKMRVM--GLRRQRNYAG
430 440 450 460 470
350 360 370 380 390 400
pF1KB5 RLDDLVSTGKLNLSQ-VRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS
: : :.. . :.. ... . . . .:.: .. . . . . .: ...:
CCDS12 RWDVLIQQATQCLNRLIQIAARKKRNYILDQ--TNVYGSAQRRKMRPFEGFQRKAIVICP
480 490 500 510 520 530
410 420 430 440 450 460
pF1KB5 AT--LHSFDVKKLSEKIMHFP--TWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH
. :.. .:. .:. : . ...:.. ..::
CCDS12 TDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVLFIELQREEADKLVRQ
540 550 560 570 580 590
470 480 490 500 510 520
pF1KB5 IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE
CCDS12 YNEEGRKAGPPPEKRFDNRGGGGFRGRGGGGGFQRYENRGPPGGNRGGFQNRGGGSGGGG
600 610 620 630 640 650
>>CCDS41659.1 HNRNPUL2 gene_id:221092|Hs108|chr11 (747 aa)
initn: 309 init1: 183 opt: 330 Z-score: 376.5 bits: 80.3 E(32554): 1.2e-14
Smith-Waterman score: 363; 39.2% identity (65.2% similar) in 158 aa overlap (119-262:278-435)
90 100 110 120 130
pF1KB5 NKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVS----------
: : :.: :. ::: .:..
CCDS41 LDTYTSDLHFQVSKDRYGGQPLFSEKFPTLWSGARSTYGVTKGKVCFEAKVTQNLPMKEG
250 260 270 280 290 300
140 150 160 170 180 190
pF1KB5 CHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDI
: . .: :::::. . .:: :.:..:: : : :..: ::...:. : .:.:::. ..
CCDS41 CTEVSLLRVGWSVDFSRPQLGEDEFSYGFDGRGLKAENGQFEEFGQTFGENDVIGCFANF
310 320 330 340 350 360
200 210 220 230 240 250
pF1KB5 DKGHVK--FSKNGKDLGLAFEIPPH-MKNQALFPACVLKNAELKFNFGE-EEFKFPPKDG
. .:. :::::.:::.:: : . ..::.: . :: ...:::. :: ::: .
CCDS41 ETEEVELSFSKNGEDLGVAFWISKDSLADRALLPHVLCKNCVVELNFGQKEEPFFPPPEE
370 380 390 400 410 420
260 270 280 290 300 310
pF1KB5 FVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYID
:: . .:
CCDS41 FVFIHAVPVEERVRTAVPPKTIEECEVILMVGLPGSGKTQWALKYAKENPEKRYNVLGAE
430 440 450 460 470 480
>>CCDS30964.1 DDX59 gene_id:83479|Hs108|chr1 (619 aa)
initn: 514 init1: 183 opt: 306 Z-score: 350.2 bits: 75.2 E(32554): 3.5e-13
Smith-Waterman score: 409; 24.0% identity (57.2% similar) in 416 aa overlap (228-630:205-560)
200 210 220 230 240 250
pF1KB5 IDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVA
: : : .. :. :. . .. : .
CCDS30 LNLQEDQIENLKQQLGILVQGQEVTRPIIDFEHCSLPEV-LNHNLKKSGYEVPTP---IQ
180 190 200 210 220 230
260 270 280 290 300
pF1KB5 LSKAPDGY----IVKSQHSGNAQ--------VTQTKFLPNAPKALIVEPSRELAEQTLNN
.. : : :. : .:... . .. : ..:.:::. :.:::: : .
CCDS30 MQMIPVGLLGRDILASADTGSGKTAAFLLPVIMRALFESKTPSALILTPTRELAIQIERQ
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB5 IKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVR
:.. . . :... .:..::. :: :.. : ....::::: :... ....: :.
CCDS30 AKELMSGL--PRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRLLDIIKQSSVELCGVK
300 310 320 330 340
370 380 390 400 410 420
pF1KB5 FLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHF
..:.:::: .:..:... . . ..:: .: :.:. :::. . ....:. ...:
CCDS30 IVVVDEADTMLKMGFQQQVLDILENIP---ND---CQTILVSATIPT-SIEQLASQLLHN
350 360 370 380 390 400
430 440 450 460 470 480
pF1KB5 PTWVDLKGEDSVP-DTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEM
:. . . :: ..: .:.... :: ..: : . :. ..
CCDS30 PVRI-ITGEKNLPCANVRQII---------LW---------VEDPAKKKKLFEILNDKKL
410 420 430 440
490 500 510 520 530 540
pF1KB5 WSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVC
.. . ..: :. : : . .:. : .. .
CCDS30 FKPPV--------------------LVFVDCKLGADLLSEA-VQKITG-------LKSIS
450 460 470
550 560 570 580 590 600
pF1KB5 LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG
.:.... :::. :. . .:: . .. : : .::.:. .: :.: .:. ..:::.::
CCDS30 IHSEKSQIERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIG
480 490 500 510 520 530
610 620 630 640 650 660
pF1KB5 RVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEE
:::: . : ::... ........ .
CCDS30 RVGRLGQNGTAITFINNNSKRLFWDIAKRVKPTGSILPPQLLNSPYLHDQKRKEQQKDKQ
540 550 560 570 580 590
>>CCDS31081.1 HNRNPU gene_id:3192|Hs108|chr1 (806 aa)
initn: 230 init1: 147 opt: 280 Z-score: 318.4 bits: 69.7 E(32554): 2e-11
Smith-Waterman score: 307; 28.5% identity (57.7% similar) in 267 aa overlap (93-322:271-537)
70 80 90 100 110
pF1KB5 IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKE----
.. :. : :. : : .: ..
CCDS31 YIEENKYSRAKSPQPPVEEEDEHFDDTVVCLDTYNCDLHFKISRDRLSASSLTMESFAFL
250 260 270 280 290 300
120 130 140 150 160
pF1KB5 WHGCRATKGLMKGKHYYEVSC-------H------DQGLCRVGWSTMQASLDLGTDKFGF
: : ::. :. ::: .:.. : : :.::: ... :: ..:..
CCDS31 WAGGRASYGVSKGKVCFEMKVTEKIPVRHLYTKDIDIHEVRIGWSLTTSGMLLGEEEFSY
310 320 330 340 350 360
170 180 190 200 210 220
pF1KB5 GFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFS--KNGKDLGLAFEIPPH-M
:.. : :. : . ..:::.: .:.: :. .... .:..: :::.:::.::.: . .
CCDS31 GYSLKGIKTCNCETEDYGEKFDENDVITCFANFESDEVELSYAKNGQDLGVAFKISKEVL
370 380 390 400 410 420
230 240 250 260 270
pF1KB5 KNQALFPACVLKNAELKFNFGEEEFK-FPPKDGFVALSKAPDGYIVKS----QHSGNAQV
.. ::: . .: ..::::..: :: . .. ....: :.. ... . .:
CCDS31 AGRPLFPHVLCHNCAVEFNFGQKEKPYFPIPEEYTFIQNVPLEDRVRGPKGPEEKKDCEV
430 440 450 460 470 480
280 290 300 310 320
pF1KB5 TQTKFLPNAPKALIV------EPSRE--LAEQTLNN---IKQFKKYI-DNPKLRELLIIG
.. ::.: :. : .:.. :. .:. . . ::: . :. :: ::
CCDS31 VMMIGLPGAGKTTWVTKHAAENPGKYNILGTNTIMDKMMVAGFKKQMADTGKLNTLLQRA
490 500 510 520 530 540
330 340 350 360 370 380
pF1KB5 GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN
CCDS31 PQCLGKFIEIAARKKRNFILDQTNVSAAAQRRKMCLFAGFQRKAVVVCPKDEDYKQRTQK
550 560 570 580 590 600
>>CCDS41479.1 HNRNPU gene_id:3192|Hs108|chr1 (825 aa)
initn: 228 init1: 147 opt: 280 Z-score: 318.3 bits: 69.7 E(32554): 2.1e-11
Smith-Waterman score: 307; 28.5% identity (57.7% similar) in 267 aa overlap (93-322:290-556)
70 80 90 100 110
pF1KB5 IVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKE----
.. :. : :. : : .: ..
CCDS41 YIEENKYSRAKSPQPPVEEEDEHFDDTVVCLDTYNCDLHFKISRDRLSASSLTMESFAFL
260 270 280 290 300 310
120 130 140 150 160
pF1KB5 WHGCRATKGLMKGKHYYEVSC-------H------DQGLCRVGWSTMQASLDLGTDKFGF
: : ::. :. ::: .:.. : : :.::: ... :: ..:..
CCDS41 WAGGRASYGVSKGKVCFEMKVTEKIPVRHLYTKDIDIHEVRIGWSLTTSGMLLGEEEFSY
320 330 340 350 360 370
170 180 190 200 210 220
pF1KB5 GFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFS--KNGKDLGLAFEIPPH-M
:.. : :. : . ..:::.: .:.: :. .... .:..: :::.:::.::.: . .
CCDS41 GYSLKGIKTCNCETEDYGEKFDENDVITCFANFESDEVELSYAKNGQDLGVAFKISKEVL
380 390 400 410 420 430
230 240 250 260 270
pF1KB5 KNQALFPACVLKNAELKFNFGEEEFK-FPPKDGFVALSKAPDGYIVKS----QHSGNAQV
.. ::: . .: ..::::..: :: . .. ....: :.. ... . .:
CCDS41 AGRPLFPHVLCHNCAVEFNFGQKEKPYFPIPEEYTFIQNVPLEDRVRGPKGPEEKKDCEV
440 450 460 470 480 490
280 290 300 310 320
pF1KB5 TQTKFLPNAPKALIV------EPSRE--LAEQTLNN---IKQFKKYI-DNPKLRELLIIG
.. ::.: :. : .:.. :. .:. . . ::: . :. :: ::
CCDS41 VMMIGLPGAGKTTWVTKHAAENPGKYNILGTNTIMDKMMVAGFKKQMADTGKLNTLLQRA
500 510 520 530 540 550
330 340 350 360 370 380
pF1KB5 GVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFIN
CCDS41 PQCLGKFIEIAARKKRNFILDQTNVSAAAQRRKMCLFAGFQRKAVVVCPKDEDYKQRTQK
560 570 580 590 600 610
>>CCDS33758.1 RNF123 gene_id:63891|Hs108|chr3 (1314 aa)
initn: 213 init1: 135 opt: 282 Z-score: 317.2 bits: 70.2 E(32554): 2.4e-11
Smith-Waterman score: 282; 29.1% identity (58.3% similar) in 230 aa overlap (123-339:125-349)
100 110 120 130 140 150
pF1KB5 MNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTM
:.: ..::: ::: .::: ..:: :.
CCDS33 VLDHTGGFEGLLLVDDDLLGVIGHSNFGTIRSTTCVYKGKWLYEVLISSQGLMQIGWCTI
100 110 120 130 140 150
160 170 180 190 200
pF1KB5 QASLD----LGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKN
. .. .: . .... :. .. : :::. .. : ..: .:.: : ..: :
CCDS33 SCRFNQEEGVGDTHNSYAYDGNRVRKWNVTTTNYGKAWAAGDIVSCLIDLDDGTLSFCLN
160 170 180 190 200 210
210 220 230 240 250 260
pF1KB5 GKDLGLAFEIPPHMKNQALFPACVLKNAE-LKFNFGEEEFKFPPKDGFVALSKAPDGYIV
: .:: ::: . ..: ::: :. : . :::: . ...: :. :. :.. .:
CCDS33 GVSLGTAFENLSRGLGMAYFPAISLSFKESVAFNFGSRPLRYPVA-GYRPLQDPPSADLV
220 230 240 250 260 270
270 280 290 300 310
pF1KB5 KSQHSGNA--QVTQTKFLPNAPKALIVEPSR-ELAEQ-----TLNNIKQFKKYIDNPKLR
..:. . : .... : . : : :. .: : :: .: :... : ::
CCDS33 RAQRLLGCFRAVLSVELDPVEGRLLDKESSKWRLRGQPTVLLTLAHI--FHHF--APLLR
280 290 300 310 320
320 330 340 350 360 370
pF1KB5 ELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQG
.. .. .: :...:.:
CCDS33 KVYLVEAVLMSFLLGIVEKGTPTQAQSVVHQVLDLLWLFMEDYEVQDCLKQLMMSLLRLY
330 340 350 360 370 380
740 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 15:24:10 2016 done: Sat Nov 5 15:24:11 2016
Total Scan time: 2.580 Total Display time: 0.090
Function used was FASTA [36.3.4 Apr, 2011]