Result of FASTA (omim) for
pF1KB5738
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5738, 740 aa
1>>>pF1KB5738 740 - 740 aa - 740 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7154+/-0.000453; mu= 17.9150+/- 0.028
mean_var=84.9051+/-16.896, 0's: 0 Z-trim(110.5): 190 B-trim: 17 in 1/50
Lambda= 0.139190
statistics sampled from 18589 (18815) to 18589 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.576), E-opt: 0.2 (0.221), width: 16
Scan time: 10.870
The best scores are: opt bits E(85289)
NP_004930 (OMIM: 601257) ATP-dependent RNA helicas ( 740) 5029 1020.8 0
NP_001309271 (OMIM: 616533) probable ATP-dependent ( 674) 374 86.0 5.6e-16
XP_006717299 (OMIM: 616533) PREDICTED: probable AT ( 691) 374 86.0 5.7e-16
XP_011517224 (OMIM: 616533) PREDICTED: probable AT ( 691) 374 86.0 5.7e-16
NP_001309272 (OMIM: 616533) probable ATP-dependent ( 722) 374 86.0 5.9e-16
NP_001309270 (OMIM: 616533) probable ATP-dependent ( 755) 374 86.0 6.1e-16
XP_005272264 (OMIM: 616533) PREDICTED: probable AT ( 755) 374 86.0 6.1e-16
XP_011517223 (OMIM: 616533) PREDICTED: probable AT ( 787) 374 86.0 6.3e-16
NP_073616 (OMIM: 616533) probable ATP-dependent RN ( 851) 374 86.0 6.8e-16
NP_653333 (OMIM: 605800) heterogeneous nuclear rib ( 756) 349 81.0 2e-14
NP_001308140 (OMIM: 605800) heterogeneous nuclear ( 756) 349 81.0 2e-14
NP_001308137 (OMIM: 605800) heterogeneous nuclear ( 756) 349 81.0 2e-14
XP_011524697 (OMIM: 605800) PREDICTED: heterogeneo ( 766) 349 81.0 2e-14
XP_005258520 (OMIM: 605800) PREDICTED: heterogeneo ( 766) 349 81.0 2e-14
XP_011524696 (OMIM: 605800) PREDICTED: heterogeneo ( 766) 349 81.0 2e-14
XP_011524695 (OMIM: 605800) PREDICTED: heterogeneo ( 766) 349 81.0 2e-14
XP_005258521 (OMIM: 605800) PREDICTED: heterogeneo ( 766) 349 81.0 2e-14
XP_005258522 (OMIM: 605800) PREDICTED: heterogeneo ( 766) 349 81.0 2e-14
NP_001287945 (OMIM: 605800) heterogeneous nuclear ( 767) 349 81.0 2e-14
XP_005258518 (OMIM: 605800) PREDICTED: heterogeneo ( 777) 349 81.0 2e-14
XP_011524694 (OMIM: 605800) PREDICTED: heterogeneo ( 792) 349 81.0 2.1e-14
NP_008971 (OMIM: 605800) heterogeneous nuclear rib ( 856) 349 81.0 2.2e-14
XP_005258516 (OMIM: 605800) PREDICTED: heterogeneo ( 866) 349 81.0 2.2e-14
XP_006711625 (OMIM: 174300,615464) PREDICTED: prob ( 557) 306 72.3 6.2e-12
NP_001307110 (OMIM: 174300,615464) probable ATP-de ( 567) 306 72.3 6.3e-12
XP_005245576 (OMIM: 174300,615464) PREDICTED: prob ( 576) 306 72.3 6.4e-12
NP_001026895 (OMIM: 174300,615464) probable ATP-de ( 619) 306 72.3 6.8e-12
XP_016857921 (OMIM: 174300,615464) PREDICTED: prob ( 619) 306 72.3 6.8e-12
XP_011508337 (OMIM: 174300,615464) PREDICTED: prob ( 619) 306 72.3 6.8e-12
XP_016857920 (OMIM: 174300,615464) PREDICTED: prob ( 619) 306 72.3 6.8e-12
NP_004492 (OMIM: 602869) heterogeneous nuclear rib ( 806) 280 67.1 3.1e-10
XP_016856606 (OMIM: 602869) PREDICTED: heterogeneo ( 806) 280 67.1 3.1e-10
XP_016856604 (OMIM: 602869) PREDICTED: heterogeneo ( 825) 280 67.2 3.2e-10
NP_114032 (OMIM: 602869) heterogeneous nuclear rib ( 825) 280 67.2 3.2e-10
XP_016856605 (OMIM: 602869) PREDICTED: heterogeneo ( 825) 280 67.2 3.2e-10
XP_016862507 (OMIM: 614472) PREDICTED: E3 ubiquiti (1314) 282 67.7 3.5e-10
NP_071347 (OMIM: 614472) E3 ubiquitin-protein liga (1314) 282 67.7 3.5e-10
XP_011532297 (OMIM: 614472) PREDICTED: E3 ubiquiti (1314) 282 67.7 3.5e-10
XP_006713348 (OMIM: 614472) PREDICTED: E3 ubiquiti (1314) 282 67.7 3.5e-10
XP_016866492 (OMIM: 606286) PREDICTED: probable AT ( 439) 274 65.8 4.4e-10
XP_011534229 (OMIM: 606286) PREDICTED: probable AT ( 529) 274 65.8 5.1e-10
XP_011534230 (OMIM: 606286) PREDICTED: probable AT ( 529) 274 65.8 5.1e-10
XP_011534228 (OMIM: 606286) PREDICTED: probable AT ( 604) 274 65.9 5.7e-10
NP_061135 (OMIM: 606286) probable ATP-dependent RN ( 648) 274 65.9 6e-10
XP_016884803 (OMIM: 300160,300958) PREDICTED: ATP- ( 475) 270 65.0 8.2e-10
XP_016884802 (OMIM: 300160,300958) PREDICTED: ATP- ( 476) 270 65.0 8.2e-10
XP_011542194 (OMIM: 300160,300958) PREDICTED: ATP- ( 598) 270 65.1 9.9e-10
NP_001180346 (OMIM: 300160,300958) ATP-dependent R ( 646) 270 65.1 1e-09
NP_001180345 (OMIM: 300160,300958) ATP-dependent R ( 661) 270 65.1 1.1e-09
NP_001347 (OMIM: 300160,300958) ATP-dependent RNA ( 662) 270 65.1 1.1e-09
>>NP_004930 (OMIM: 601257) ATP-dependent RNA helicase DD (740 aa)
initn: 5029 init1: 5029 opt: 5029 Z-score: 5459.1 bits: 1020.8 E(85289): 0
Smith-Waterman score: 5029; 100.0% identity (100.0% similar) in 740 aa overlap (1-740:1-740)
10 20 30 40 50 60
pF1KB5 MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 NFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLN
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB5 SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB5 HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 HRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLS
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB5 EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEK
670 680 690 700 710 720
730 740
pF1KB5 EAQTSFLHLGYLPNQLFRTF
::::::::::::::::::::
NP_004 EAQTSFLHLGYLPNQLFRTF
730 740
>>NP_001309271 (OMIM: 616533) probable ATP-dependent RNA (674 aa)
initn: 431 init1: 175 opt: 374 Z-score: 407.8 bits: 86.0 E(85289): 5.6e-16
Smith-Waterman score: 382; 25.0% identity (59.8% similar) in 376 aa overlap (266-626:112-463)
240 250 260 270 280 290
pF1KB5 AELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPS
.:.: .. .... .. ..: ::.. :.
NP_001 KQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRS----DGPYALVLVPT
90 100 110 120 130
300 310 320 330 340 350
pF1KB5 RELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRL-DDLV
:::: :........ : . . ...:: ... . :..:..:...::::: : .
NP_001 RELALQSFDTVQKLLKPFT--WIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIK
140 150 160 170 180 190
360 370 380 390 400 410
pF1KB5 STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFD
:: ....:..:.::.:::: .:. :. :. . : :... .. : .. :::: .
NP_001 STKNIHFSRLRWLVFDEADRILDLGFEKDITVILNA---VNAECQKRQNVLLSATL-TEG
200 210 220 230 240 250
420 430 440 450 460 470
pF1KB5 VKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK-SHIRTDDVHAKD
: .:.. .: :. . :: : : .::: . : . . :. .
NP_001 VTRLADISLHDPVSI------SVLDKSHD---QLNPKDKAVQEVCPPPAGDKLDSFAIPE
260 270 280 290 300
480 490 500 510 520
pF1KB5 NTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE-------QYF
. . .. . :. . . . .. : .. .. ..: . :. .: : .
NP_001 SLKQHVTV--VPSKLRLVCLAAFILQKCKFEEDQKMVVFFSS---CELVEFHYSLFLQTL
310 320 330 340 350
530 540 550 560 570 580
pF1KB5 IQQGGGP-----DKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI
....:.: . . ... . ::: . .:: ...:... :.::::::::.:.
NP_001 LSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCTDVAARGLDL
360 370 380 390 400 410
590 600 610 620 630 640
pF1KB5 HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA-TEKEKVWYHVCSSRGKGCYN
: .... . :. .:.:::::..: : .. ..: .: : :
NP_001 PQVTWIVQYNAPSSPAEYIHRIGRTARIGCHGSSLLILAPSEAEYVNSLASHKINVSEIK
420 430 440 450 460 470
650 660 670 680 690 700
pF1KB5 TRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGS
NP_001 MEDILCVLTRDDCFKGKRWGAQKSHAVGPQEIRERATVLQTVFEDYVHSSERRVSWAKKA
480 490 500 510 520 530
>>XP_006717299 (OMIM: 616533) PREDICTED: probable ATP-de (691 aa)
initn: 485 init1: 175 opt: 374 Z-score: 407.7 bits: 86.0 E(85289): 5.7e-16
Smith-Waterman score: 382; 25.0% identity (59.8% similar) in 376 aa overlap (266-626:289-640)
240 250 260 270 280 290
pF1KB5 AELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPS
.:.: .. .... .. ..: ::.. :.
XP_006 KQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRS----DGPYALVLVPT
260 270 280 290 300 310
300 310 320 330 340 350
pF1KB5 RELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRL-DDLV
:::: :........ : . . ...:: ... . :..:..:...::::: : .
XP_006 RELALQSFDTVQKLLKPFT--WIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIK
320 330 340 350 360 370
360 370 380 390 400 410
pF1KB5 STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFD
:: ....:..:.::.:::: .:. :. :. . : :... .. : .. :::: .
XP_006 STKNIHFSRLRWLVFDEADRILDLGFEKDITVILNA---VNAECQKRQNVLLSATL-TEG
380 390 400 410 420
420 430 440 450 460 470
pF1KB5 VKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK-SHIRTDDVHAKD
: .:.. .: :. . :: : : .::: . : . . :. .
XP_006 VTRLADISLHDPVSI------SVLDKSHD---QLNPKDKAVQEVCPPPAGDKLDSFAIPE
430 440 450 460 470
480 490 500 510 520
pF1KB5 NTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE-------QYF
. . .. . :. . . . .. : .. .. ..: . :. .: : .
XP_006 SLKQHVTV--VPSKLRLVCLAAFILQKCKFEEDQKMVVFFSS---CELVEFHYSLFLQTL
480 490 500 510 520 530
530 540 550 560 570 580
pF1KB5 IQQGGGP-----DKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI
....:.: . . ... . ::: . .:: ...:... :.::::::::.:.
XP_006 LSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCTDVAARGLDL
540 550 560 570 580 590
590 600 610 620 630 640
pF1KB5 HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA-TEKEKVWYHVCSSRGKGCYN
: .... . :. .:.:::::..: : .. ..: .: : :
XP_006 PQVTWIVQYNAPSSPAEYIHRIGRTARIGCHGSSLLILAPSEAEYVNSLASHKINSAVLH
600 610 620 630 640 650
650 660 670 680 690 700
pF1KB5 TRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGS
XP_006 PSLRHLPQGAEAHLPRPIPPPWACGEELRTKRCPQES
660 670 680 690
>>XP_011517224 (OMIM: 616533) PREDICTED: probable ATP-de (691 aa)
initn: 485 init1: 175 opt: 374 Z-score: 407.7 bits: 86.0 E(85289): 5.7e-16
Smith-Waterman score: 382; 25.0% identity (59.8% similar) in 376 aa overlap (266-626:289-640)
240 250 260 270 280 290
pF1KB5 AELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPS
.:.: .. .... .. ..: ::.. :.
XP_011 KQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRS----DGPYALVLVPT
260 270 280 290 300 310
300 310 320 330 340 350
pF1KB5 RELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRL-DDLV
:::: :........ : . . ...:: ... . :..:..:...::::: : .
XP_011 RELALQSFDTVQKLLKPFT--WIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIK
320 330 340 350 360 370
360 370 380 390 400 410
pF1KB5 STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFD
:: ....:..:.::.:::: .:. :. :. . : :... .. : .. :::: .
XP_011 STKNIHFSRLRWLVFDEADRILDLGFEKDITVILNA---VNAECQKRQNVLLSATL-TEG
380 390 400 410 420
420 430 440 450 460 470
pF1KB5 VKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK-SHIRTDDVHAKD
: .:.. .: :. . :: : : .::: . : . . :. .
XP_011 VTRLADISLHDPVSI------SVLDKSHD---QLNPKDKAVQEVCPPPAGDKLDSFAIPE
430 440 450 460 470
480 490 500 510 520
pF1KB5 NTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE-------QYF
. . .. . :. . . . .. : .. .. ..: . :. .: : .
XP_011 SLKQHVTV--VPSKLRLVCLAAFILQKCKFEEDQKMVVFFSS---CELVEFHYSLFLQTL
480 490 500 510 520 530
530 540 550 560 570 580
pF1KB5 IQQGGGP-----DKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI
....:.: . . ... . ::: . .:: ...:... :.::::::::.:.
XP_011 LSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCTDVAARGLDL
540 550 560 570 580 590
590 600 610 620 630 640
pF1KB5 HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA-TEKEKVWYHVCSSRGKGCYN
: .... . :. .:.:::::..: : .. ..: .: : :
XP_011 PQVTWIVQYNAPSSPAEYIHRIGRTARIGCHGSSLLILAPSEAEYVNSLASHKINSAVLH
600 610 620 630 640 650
650 660 670 680 690 700
pF1KB5 TRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGS
XP_011 PSLRHLPQGAEAHLPRPIPPPWACGEELRTKRCPQES
660 670 680 690
>>NP_001309272 (OMIM: 616533) probable ATP-dependent RNA (722 aa)
initn: 485 init1: 175 opt: 374 Z-score: 407.4 bits: 86.0 E(85289): 5.9e-16
Smith-Waterman score: 382; 25.0% identity (59.8% similar) in 376 aa overlap (266-626:160-511)
240 250 260 270 280 290
pF1KB5 AELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPS
.:.: .. .... .. ..: ::.. :.
NP_001 KQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRS----DGPYALVLVPT
130 140 150 160 170 180
300 310 320 330 340 350
pF1KB5 RELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRL-DDLV
:::: :........ : . . ...:: ... . :..:..:...::::: : .
NP_001 RELALQSFDTVQKLLKPFT--WIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIK
190 200 210 220 230 240
360 370 380 390 400 410
pF1KB5 STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFD
:: ....:..:.::.:::: .:. :. :. . : :... .. : .. :::: .
NP_001 STKNIHFSRLRWLVFDEADRILDLGFEKDITVILNA---VNAECQKRQNVLLSATL-TEG
250 260 270 280 290
420 430 440 450 460 470
pF1KB5 VKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK-SHIRTDDVHAKD
: .:.. .: :. . :: : : .::: . : . . :. .
NP_001 VTRLADISLHDPVSI------SVLDKSHD---QLNPKDKAVQEVCPPPAGDKLDSFAIPE
300 310 320 330 340 350
480 490 500 510 520
pF1KB5 NTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE-------QYF
. . .. . :. . . . .. : .. .. ..: . :. .: : .
NP_001 SLKQHVTV--VPSKLRLVCLAAFILQKCKFEEDQKMVVFFSS---CELVEFHYSLFLQTL
360 370 380 390 400
530 540 550 560 570 580
pF1KB5 IQQGGGP-----DKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI
....:.: . . ... . ::: . .:: ...:... :.::::::::.:.
NP_001 LSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCTDVAARGLDL
410 420 430 440 450 460
590 600 610 620 630 640
pF1KB5 HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA-TEKEKVWYHVCSSRGKGCYN
: .... . :. .:.:::::..: : .. ..: .: : :
NP_001 PQVTWIVQYNAPSSPAEYIHRIGRTARIGCHGSSLLILAPSEAEYVNSLASHKINVSEIK
470 480 490 500 510 520
650 660 670 680 690 700
pF1KB5 TRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGS
NP_001 MEDILCVLTRDDCFKGKRWGAQKSHAVGPQEIRERATVLQTVFEDYVHSSERRVSWAKKA
530 540 550 560 570 580
>>NP_001309270 (OMIM: 616533) probable ATP-dependent RNA (755 aa)
initn: 485 init1: 175 opt: 374 Z-score: 407.1 bits: 86.0 E(85289): 6.1e-16
Smith-Waterman score: 382; 25.0% identity (59.8% similar) in 376 aa overlap (266-626:193-544)
240 250 260 270 280 290
pF1KB5 AELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPS
.:.: .. .... .. ..: ::.. :.
NP_001 KQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRS----DGPYALVLVPT
170 180 190 200 210
300 310 320 330 340 350
pF1KB5 RELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRL-DDLV
:::: :........ : . . ...:: ... . :..:..:...::::: : .
NP_001 RELALQSFDTVQKLLKPFT--WIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIK
220 230 240 250 260 270
360 370 380 390 400 410
pF1KB5 STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFD
:: ....:..:.::.:::: .:. :. :. . : :... .. : .. :::: .
NP_001 STKNIHFSRLRWLVFDEADRILDLGFEKDITVILNA---VNAECQKRQNVLLSATL-TEG
280 290 300 310 320 330
420 430 440 450 460 470
pF1KB5 VKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK-SHIRTDDVHAKD
: .:.. .: :. . :: : : .::: . : . . :. .
NP_001 VTRLADISLHDPVSI------SVLDKSHD---QLNPKDKAVQEVCPPPAGDKLDSFAIPE
340 350 360 370 380
480 490 500 510 520
pF1KB5 NTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE-------QYF
. . .. . :. . . . .. : .. .. ..: . :. .: : .
NP_001 SLKQHVTV--VPSKLRLVCLAAFILQKCKFEEDQKMVVFFSS---CELVEFHYSLFLQTL
390 400 410 420 430
530 540 550 560 570 580
pF1KB5 IQQGGGP-----DKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI
....:.: . . ... . ::: . .:: ...:... :.::::::::.:.
NP_001 LSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCTDVAARGLDL
440 450 460 470 480 490
590 600 610 620 630 640
pF1KB5 HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA-TEKEKVWYHVCSSRGKGCYN
: .... . :. .:.:::::..: : .. ..: .: : :
NP_001 PQVTWIVQYNAPSSPAEYIHRIGRTARIGCHGSSLLILAPSEAEYVNSLASHKINVSEIK
500 510 520 530 540 550
650 660 670 680 690 700
pF1KB5 TRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGS
NP_001 MEDILCVLTRDDCFKGKRWGAQKSHAVGPQEIRERATVLQTVFEDYVHSSERRVSWAKKA
560 570 580 590 600 610
>>XP_005272264 (OMIM: 616533) PREDICTED: probable ATP-de (755 aa)
initn: 485 init1: 175 opt: 374 Z-score: 407.1 bits: 86.0 E(85289): 6.1e-16
Smith-Waterman score: 382; 25.0% identity (59.8% similar) in 376 aa overlap (266-626:193-544)
240 250 260 270 280 290
pF1KB5 AELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPS
.:.: .. .... .. ..: ::.. :.
XP_005 KQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRS----DGPYALVLVPT
170 180 190 200 210
300 310 320 330 340 350
pF1KB5 RELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRL-DDLV
:::: :........ : . . ...:: ... . :..:..:...::::: : .
XP_005 RELALQSFDTVQKLLKPFT--WIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIK
220 230 240 250 260 270
360 370 380 390 400 410
pF1KB5 STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFD
:: ....:..:.::.:::: .:. :. :. . : :... .. : .. :::: .
XP_005 STKNIHFSRLRWLVFDEADRILDLGFEKDITVILNA---VNAECQKRQNVLLSATL-TEG
280 290 300 310 320 330
420 430 440 450 460 470
pF1KB5 VKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK-SHIRTDDVHAKD
: .:.. .: :. . :: : : .::: . : . . :. .
XP_005 VTRLADISLHDPVSI------SVLDKSHD---QLNPKDKAVQEVCPPPAGDKLDSFAIPE
340 350 360 370 380
480 490 500 510 520
pF1KB5 NTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE-------QYF
. . .. . :. . . . .. : .. .. ..: . :. .: : .
XP_005 SLKQHVTV--VPSKLRLVCLAAFILQKCKFEEDQKMVVFFSS---CELVEFHYSLFLQTL
390 400 410 420 430
530 540 550 560 570 580
pF1KB5 IQQGGGP-----DKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI
....:.: . . ... . ::: . .:: ...:... :.::::::::.:.
XP_005 LSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCTDVAARGLDL
440 450 460 470 480 490
590 600 610 620 630 640
pF1KB5 HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA-TEKEKVWYHVCSSRGKGCYN
: .... . :. .:.:::::..: : .. ..: .: : :
XP_005 PQVTWIVQYNAPSSPAEYIHRIGRTARIGCHGSSLLILAPSEAEYVNSLASHKINVSEIK
500 510 520 530 540 550
650 660 670 680 690 700
pF1KB5 TRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGS
XP_005 MEDILCVLTRDDCFKGKRWGAQKSHAVGPQEIRERATVLQTVFEDYVHSSERRVSWAKKA
560 570 580 590 600 610
>>XP_011517223 (OMIM: 616533) PREDICTED: probable ATP-de (787 aa)
initn: 431 init1: 175 opt: 374 Z-score: 406.9 bits: 86.0 E(85289): 6.3e-16
Smith-Waterman score: 382; 25.0% identity (59.8% similar) in 376 aa overlap (266-626:289-640)
240 250 260 270 280 290
pF1KB5 AELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPS
.:.: .. .... .. ..: ::.. :.
XP_011 KQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRS----DGPYALVLVPT
260 270 280 290 300 310
300 310 320 330 340 350
pF1KB5 RELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRL-DDLV
:::: :........ : . . ...:: ... . :..:..:...::::: : .
XP_011 RELALQSFDTVQKLLKPFT--WIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIK
320 330 340 350 360 370
360 370 380 390 400 410
pF1KB5 STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFD
:: ....:..:.::.:::: .:. :. :. . : :... .. : .. :::: .
XP_011 STKNIHFSRLRWLVFDEADRILDLGFEKDITVILNA---VNAECQKRQNVLLSATL-TEG
380 390 400 410 420
420 430 440 450 460 470
pF1KB5 VKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK-SHIRTDDVHAKD
: .:.. .: :. . :: : : .::: . : . . :. .
XP_011 VTRLADISLHDPVSI------SVLDKSHD---QLNPKDKAVQEVCPPPAGDKLDSFAIPE
430 440 450 460 470
480 490 500 510 520
pF1KB5 NTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE-------QYF
. . .. . :. . . . .. : .. .. ..: . :. .: : .
XP_011 SLKQHVTV--VPSKLRLVCLAAFILQKCKFEEDQKMVVFFSS---CELVEFHYSLFLQTL
480 490 500 510 520 530
530 540 550 560 570 580
pF1KB5 IQQGGGP-----DKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI
....:.: . . ... . ::: . .:: ...:... :.::::::::.:.
XP_011 LSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCTDVAARGLDL
540 550 560 570 580 590
590 600 610 620 630 640
pF1KB5 HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA-TEKEKVWYHVCSSRGKGCYN
: .... . :. .:.:::::..: : .. ..: .: : :
XP_011 PQVTWIVQYNAPSSPAEYIHRIGRTARIGCHGSSLLILAPSEAEYVNSLASHKINVSEIK
600 610 620 630 640 650
650 660 670 680 690 700
pF1KB5 TRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGS
XP_011 MEDILCVLTRDDCFKGKRWGAQKSHAVGPQEIRERATVLQTVFEDYVHSSERRVSWAKKA
660 670 680 690 700 710
>>NP_073616 (OMIM: 616533) probable ATP-dependent RNA he (851 aa)
initn: 431 init1: 175 opt: 374 Z-score: 406.4 bits: 86.0 E(85289): 6.8e-16
Smith-Waterman score: 382; 25.0% identity (59.8% similar) in 376 aa overlap (266-626:289-640)
240 250 260 270 280 290
pF1KB5 AELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPS
.:.: .. .... .. ..: ::.. :.
NP_073 KQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRS----DGPYALVLVPT
260 270 280 290 300 310
300 310 320 330 340 350
pF1KB5 RELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRL-DDLV
:::: :........ : . . ...:: ... . :..:..:...::::: : .
NP_073 RELALQSFDTVQKLLKPFT--WIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIK
320 330 340 350 360 370
360 370 380 390 400 410
pF1KB5 STGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFD
:: ....:..:.::.:::: .:. :. :. . : :... .. : .. :::: .
NP_073 STKNIHFSRLRWLVFDEADRILDLGFEKDITVILNA---VNAECQKRQNVLLSATL-TEG
380 390 400 410 420
420 430 440 450 460 470
pF1KB5 VKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK-SHIRTDDVHAKD
: .:.. .: :. . :: : : .::: . : . . :. .
NP_073 VTRLADISLHDPVSI------SVLDKSHD---QLNPKDKAVQEVCPPPAGDKLDSFAIPE
430 440 450 460 470
480 490 500 510 520
pF1KB5 NTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE-------QYF
. . .. . :. . . . .. : .. .. ..: . :. .: : .
NP_073 SLKQHVTV--VPSKLRLVCLAAFILQKCKFEEDQKMVVFFSS---CELVEFHYSLFLQTL
480 490 500 510 520 530
530 540 550 560 570 580
pF1KB5 IQQGGGP-----DKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDI
....:.: . . ... . ::: . .:: ...:... :.::::::::.:.
NP_073 LSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCTDVAARGLDL
540 550 560 570 580 590
590 600 610 620 630 640
pF1KB5 HGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVA-TEKEKVWYHVCSSRGKGCYN
: .... . :. .:.:::::..: : .. ..: .: : :
NP_073 PQVTWIVQYNAPSSPAEYIHRIGRTARIGCHGSSLLILAPSEAEYVNSLASHKINVSEIK
600 610 620 630 640 650
650 660 670 680 690 700
pF1KB5 TRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGS
NP_073 MEDILCVLTRDDCFKGKRWGAQKSHAVGPQEIRERATVLQTVFEDYVHSSERRVSWAKKA
660 670 680 690 700 710
>>NP_653333 (OMIM: 605800) heterogeneous nuclear ribonuc (756 aa)
initn: 350 init1: 210 opt: 349 Z-score: 380.0 bits: 81.0 E(85289): 2e-14
Smith-Waterman score: 385; 25.4% identity (57.7% similar) in 366 aa overlap (97-439:127-469)
70 80 90 100 110 120
pF1KB5 TLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRATK
::.:.. . .:. . : : ::.
NP_653 PPAEEDEDDFDDTLVAIDTYNCDLHFKVARDRSSGYPLTIEGF------AYLWSGARASY
100 110 120 130 140 150
130 140 150 160 170
pF1KB5 GLMKGKHYYEVSCH-------------DQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKK
:. .:. .:.. . : . :.::: . : .:: . :..:.::::::
NP_653 GVRRGRVCFEMKINEEISVKHLPSTEPDPHVVRIGWSLDSCSTQLGEEPFSYGYGGTGKK
160 170 180 190 200 210
180 190 200 210 220
pF1KB5 SHNKQFDNYGEEFTMHDTIGCYLDIDKGH---VKFSKNGKDLGLAFEIPPH-MKNQALFP
: :..:.:::..:. .:.:::. :.. :. ..:.:::: .:.::.: . . .:::.:
NP_653 STNSRFENYGDKFAENDVIGCFADFECGNDVELSFTKNGKWMGIAFRIQKEALGGQALYP
220 230 240 250 260 270
230 240 250 260 270 280
pF1KB5 ACVLKNAELKFNFGEEEFKF-PPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPK
..:: ..::::.. . ::. ... : . ... : . .. ..:
NP_653 HVLVKNCAVEFNFGQRAEPYCSVLPGFTFIQHLPLSERIRGT-VGPKSKAECEIL-----
280 290 300 310 320
290 300 310 320 330 340
pF1KB5 ALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPG
.. :. : .: ::. .::. .. :.: : :.. :. :. . :
NP_653 MMVGLPA---AGKTTWAIKH---AASNPS-KKYNILGTNAIMDKMRVM--GLRRQRNYAG
330 340 350 360 370
350 360 370 380 390 400
pF1KB5 RLDDLVSTGKLNLSQ-VRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCS
: : :.. . :.. ... . . . .:.: .. . . . . .: ...:
NP_653 RWDVLIQQATQCLNRLIQIAARKKRNYILDQ--TNVYGSAQRRKMRPFEGFQRKAIVICP
380 390 400 410 420 430
410 420 430 440 450 460
pF1KB5 AT--LHSFDVKKLSEKIMHFP--TWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSH
. :.. .:. .:. : . ...:.. ..::
NP_653 TDEDLKDRTIKRTDEEGKDVPDHAVLEMKANFTLPDVGDFLDEVLFIELQREEADKLVRQ
440 450 460 470 480 490
470 480 490 500 510 520
pF1KB5 IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLE
NP_653 YNEEGRKAGPPPEKRFDNRGGGGFRGRGGGGGFQRYENRGPPGGNRGGFQNRGGGSGGGG
500 510 520 530 540 550
740 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 15:24:11 2016 done: Sat Nov 5 15:24:13 2016
Total Scan time: 10.870 Total Display time: 0.140
Function used was FASTA [36.3.4 Apr, 2011]