FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5740, 740 aa
  1>>>pF1KB5740 740 - 740 aa - 740 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.1652+/-0.00096; mu= 1.4114+/- 0.057
 mean_var=200.3200+/-40.106, 0's: 0 Z-trim(111.5): 74  B-trim: 62 in 2/51
 Lambda= 0.090618
 statistics sampled from 12374 (12447) to 12374 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.728), E-opt: 0.2 (0.382), width:  16
 Scan time:  4.610

The best scores are:                                      opt bits E(32554)
CCDS13097.1 LRRN4 gene_id:164312|Hs108|chr20       ( 740) 5018 669.2 6.3e-192


>>CCDS13097.1 LRRN4 gene_id:164312|Hs108|chr20            (740 aa)
 initn: 5018 init1: 5018 opt: 5018  Z-score: 3559.1  bits: 669.2 E(32554): 6.3e-192
Smith-Waterman score: 5018; 99.9% identity (99.9% similar) in 740 aa overlap (1-740:1-740)

               10        20        30        40        50        60
pF1KB5 MRQTLPLLLLTVLRPSWADPPQEKVPLFRVTQQGPWGSSGSNATDSPCEGLPAADATALT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MRQTLPLLLLTVLRPSWADPPQEKVPLFRVTQQGPWGSSGSNATDSPCEGLPAADATALT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 LANRNLERLPGCLPRTLRSLDASHNLLRALSTSELGHLEQLQVLTLRHNRIAALRWGPGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LANRNLERLPGCLPRTLRSLDASHNLLRALSTSELGHLEQLQVLTLRHNRIAALRWGPGG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 PAGLHTLDLSYNQLAALLPCTGPALSSLRALALAGNPLRALQPRAFACFPALQLLNLSCT
       ::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
CCDS13 PAGLHTLDLSYNQLAALPPCTGPALSSLRALALAGNPLRALQPRAFACFPALQLLNLSCT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 ALGRGAQGGIAEAAFAGEDGAPLVTLEVLDLSGTFLERVESGWIRDLPKLTSLYLRKMPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ALGRGAQGGIAEAAFAGEDGAPLVTLEVLDLSGTFLERVESGWIRDLPKLTSLYLRKMPR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 LTTLEGDIFKMTPNLQQLDCQDSPALASVATHIFQDTPHLQVLLFQNCNLSSFPPWTLDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LTTLEGDIFKMTPNLQQLDCQDSPALASVATHIFQDTPHLQVLLFQNCNLSSFPPWTLDS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 SQVLSINLFGNPLTCSCDLSWLLTDAKRTVLSRAADTMCAPAAGSSGPFSASLSLSQLPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SQVLSINLFGNPLTCSCDLSWLLTDAKRTVLSRAADTMCAPAAGSSGPFSASLSLSQLPG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 VCQSDQSTTLGASHPPCFNRSTYAQGTTVAPSAAPATRPAGDQQSVSKAPNVGSRTIAAW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VCQSDQSTTLGASHPPCFNRSTYAQGTTVAPSAAPATRPAGDQQSVSKAPNVGSRTIAAW
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 PHSDAREGTAPSTTNSVAGHSNSSVFPRAASTTRTQHRGEHAPELVLEPDISAASTPLAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PHSDAREGTAPSTTNSVAGHSNSSVFPRAASTTRTQHRGEHAPELVLEPDISAASTPLAS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 KLLGPFPTSWDRSISSPQPGQRTHATPQAPNPSLSEGEIPVLLLDDYSEEEEGRKEEVGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KLLGPFPTSWDRSISSPQPGQRTHATPQAPNPSLSEGEIPVLLLDDYSEEEEGRKEEVGT
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB5 PHQDVPCDYHPCKHLQTPCAELQRRWRCRCPGLSGEDTIPDPPRLQGVTETTDTSALVHW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PHQDVPCDYHPCKHLQTPCAELQRRWRCRCPGLSGEDTIPDPPRLQGVTETTDTSALVHW
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB5 CAPNSVVHGYQIRYSAEGWAGNQSVVGVIYATARQHPLYGLSPGTTYRVCVLAANRAGLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CAPNSVVHGYQIRYSAEGWAGNQSVVGVIYATARQHPLYGLSPGTTYRVCVLAANRAGLS
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB5 QPRSSGWRSPCAAFTTKPSFALLLSGLCAASGLLLASTVVLSACLCRRGQTLGLQRCDTH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QPRSSGWRSPCAAFTTKPSFALLLSGLCAASGLLLASTVVLSACLCRRGQTLGLQRCDTH
              670       680       690       700       710       720

              730       740
pF1KB5 LVAYKNPAFDDYPLGLQTVS
       ::::::::::::::::::::
CCDS13 LVAYKNPAFDDYPLGLQTVS
              730       740




740 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 15:24:49 2016 done: Sat Nov  5 15:24:49 2016
 Total Scan time:  4.610 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]