FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5758, 739 aa
  1>>>pF1KB5758 739 - 739 aa - 739 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9838+/-0.00104; mu= 16.5465+/- 0.063
 mean_var=78.6521+/-15.756, 0's: 0 Z-trim(104.7): 22  B-trim: 3 in 1/49
 Lambda= 0.144617
 statistics sampled from 8038 (8044) to 8038 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.611), E-opt: 0.2 (0.247), width:  16
 Scan time:  3.900

The best scores are:                                      opt bits E(32554)
CCDS43564.1 GARS gene_id:2617|Hs108|chr7           ( 739) 4880 1028.4       0


>>CCDS43564.1 GARS gene_id:2617|Hs108|chr7                (739 aa)
 initn: 4880 init1: 4880 opt: 4880  Z-score: 5500.2  bits: 1028.4 E(32554):    0
Smith-Waterman score: 4880; 99.9% identity (99.9% similar) in 739 aa overlap (1-739:1-739)

               10        20        30        40        50        60
pF1KB5 MPSPRPVLLRGARAALLLLLPPRLLARPSLLLRRSLSAASCAPISLPAAASRSSMDGAGA
       ::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
CCDS43 MPSPRPVLLRGARAALLLLLPPRLLARPSLLLRRSLSAASCPPISLPAAASRSSMDGAGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 EEVLAPLRLAVRQQGDLVRKLKEDKAPQVDVDKAVAELKARKRVLEAKELALQPKDDIVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EEVLAPLRLAVRQQGDLVRKLKEDKAPQVDVDKAVAELKARKRVLEAKELALQPKDDIVD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 RAKMEDTLKRRFFYDQAFAIYGGVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RAKMEDTLKRRFFYDQAFAIYGGVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 TMLTPEPVLKTSGHVDKFADFMVKDVKNGECFRADHLLKAHLQKLMSDKKCSVEKKSEME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TMLTPEPVLKTSGHVDKFADFMVKDVKNGECFRADHLLKAHLQKLMSDKKCSVEKKSEME
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 SVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFKTFIGPGGNMPGYLRPET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFKTFIGPGGNMPGYLRPET
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 AQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHFVDPSEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 AQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHFVDPSEK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 DHPKFQNVADLHLYLYSAKAQVSGQSARKMRLGDAVEQGVINNTVLGYFIGRIYLYLTKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DHPKFQNVADLHLYLYSAKAQVSGQSARKMRLGDAVEQGVINNTVLGYFIGRIYLYLTKV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 GISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHARATKVPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHARATKVPL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 VAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICDECYITEMEMLLNEKGEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICDECYITEMEMLLNEKGEF
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB5 TIETEGKTFQLTKDMINVKRFQKTLYVEEVVPNVIEPSFGLGRIMYTVFEHTFHVREGDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TIETEGKTFQLTKDMINVKRFQKTLYVEEVVPNVIEPSFGLGRIMYTVFEHTFHVREGDE
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB5 QRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDSSGSIGRRYAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDSSGSIGRRYAR
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB5 TDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEISELPSIVQDLANGNITWADVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEISELPSIVQDLANGNITWADVE
              670       680       690       700       710       720

              730         
pF1KB5 ARYPLFEGQETGKKETIEE
       :::::::::::::::::::
CCDS43 ARYPLFEGQETGKKETIEE
              730         




739 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 16:16:33 2016 done: Sat Nov  5 16:16:34 2016
 Total Scan time:  3.900 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]