Result of FASTA (omim) for
pF1KB5758
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5758, 739 aa
1>>>pF1KB5758 739 - 739 aa - 739 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5968+/-0.000443; mu= 18.8590+/- 0.027
mean_var=80.6379+/-15.974, 0's: 0 Z-trim(111.5): 27 B-trim: 27 in 1/51
Lambda= 0.142825
statistics sampled from 20069 (20086) to 20069 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.594), E-opt: 0.2 (0.236), width: 16
Scan time: 11.870
The best scores are: opt bits E(85289)
NP_002038 (OMIM: 600287,600794,601472) glycine--tR ( 739) 4880 1016.0 0
NP_001303701 (OMIM: 600287,600794,601472) glycine- ( 685) 4547 947.4 0
XP_006715749 (OMIM: 600287,600794,601472) PREDICTE ( 616) 4117 858.7 0
>>NP_002038 (OMIM: 600287,600794,601472) glycine--tRNA l (739 aa)
initn: 4880 init1: 4880 opt: 4880 Z-score: 5433.5 bits: 1016.0 E(85289): 0
Smith-Waterman score: 4880; 99.9% identity (99.9% similar) in 739 aa overlap (1-739:1-739)
10 20 30 40 50 60
pF1KB5 MPSPRPVLLRGARAALLLLLPPRLLARPSLLLRRSLSAASCAPISLPAAASRSSMDGAGA
::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
NP_002 MPSPRPVLLRGARAALLLLLPPRLLARPSLLLRRSLSAASCPPISLPAAASRSSMDGAGA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 EEVLAPLRLAVRQQGDLVRKLKEDKAPQVDVDKAVAELKARKRVLEAKELALQPKDDIVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 EEVLAPLRLAVRQQGDLVRKLKEDKAPQVDVDKAVAELKARKRVLEAKELALQPKDDIVD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 RAKMEDTLKRRFFYDQAFAIYGGVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 RAKMEDTLKRRFFYDQAFAIYGGVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 TMLTPEPVLKTSGHVDKFADFMVKDVKNGECFRADHLLKAHLQKLMSDKKCSVEKKSEME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TMLTPEPVLKTSGHVDKFADFMVKDVKNGECFRADHLLKAHLQKLMSDKKCSVEKKSEME
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 SVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFKTFIGPGGNMPGYLRPET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFKTFIGPGGNMPGYLRPET
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 AQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHFVDPSEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 AQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHFVDPSEK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 DHPKFQNVADLHLYLYSAKAQVSGQSARKMRLGDAVEQGVINNTVLGYFIGRIYLYLTKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 DHPKFQNVADLHLYLYSAKAQVSGQSARKMRLGDAVEQGVINNTVLGYFIGRIYLYLTKV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 GISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHARATKVPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHARATKVPL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 VAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICDECYITEMEMLLNEKGEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 VAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICDECYITEMEMLLNEKGEF
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB5 TIETEGKTFQLTKDMINVKRFQKTLYVEEVVPNVIEPSFGLGRIMYTVFEHTFHVREGDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TIETEGKTFQLTKDMINVKRFQKTLYVEEVVPNVIEPSFGLGRIMYTVFEHTFHVREGDE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB5 QRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDSSGSIGRRYAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 QRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDSSGSIGRRYAR
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB5 TDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEISELPSIVQDLANGNITWADVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEISELPSIVQDLANGNITWADVE
670 680 690 700 710 720
730
pF1KB5 ARYPLFEGQETGKKETIEE
:::::::::::::::::::
NP_002 ARYPLFEGQETGKKETIEE
730
>>NP_001303701 (OMIM: 600287,600794,601472) glycine--tRN (685 aa)
initn: 4547 init1: 4547 opt: 4547 Z-score: 5063.1 bits: 947.4 E(85289): 0
Smith-Waterman score: 4547; 100.0% identity (100.0% similar) in 685 aa overlap (55-739:1-685)
30 40 50 60 70 80
pF1KB5 LARPSLLLRRSLSAASCAPISLPAAASRSSMDGAGAEEVLAPLRLAVRQQGDLVRKLKED
::::::::::::::::::::::::::::::
NP_001 MDGAGAEEVLAPLRLAVRQQGDLVRKLKED
10 20 30
90 100 110 120 130 140
pF1KB5 KAPQVDVDKAVAELKARKRVLEAKELALQPKDDIVDRAKMEDTLKRRFFYDQAFAIYGGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KAPQVDVDKAVAELKARKRVLEAKELALQPKDDIVDRAKMEDTLKRRFFYDQAFAIYGGV
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB5 SGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVK
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB5 DVKNGECFRADHLLKAHLQKLMSDKKCSVEKKSEMESVLAQLDNYGQQELADLFVNYNVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVKNGECFRADHLLKAHLQKLMSDKKCSVEKKSEMESVLAQLDNYGQQELADLFVNYNVK
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB5 SPITGNDLSPPVSFNLMFKTFIGPGGNMPGYLRPETAQGIFLNFKRLLEFNQGKLPFAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPITGNDLSPPVSFNLMFKTFIGPGGNMPGYLRPETAQGIFLNFKRLLEFNQGKLPFAAA
220 230 240 250 260 270
330 340 350 360 370 380
pF1KB5 QIGNSFRNEISPRSGLIRVREFTMAEIEHFVDPSEKDHPKFQNVADLHLYLYSAKAQVSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QIGNSFRNEISPRSGLIRVREFTMAEIEHFVDPSEKDHPKFQNVADLHLYLYSAKAQVSG
280 290 300 310 320 330
390 400 410 420 430 440
pF1KB5 QSARKMRLGDAVEQGVINNTVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QSARKMRLGDAVEQGVINNTVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDC
340 350 360 370 380 390
450 460 470 480 490 500
pF1KB5 WDAESKTSYGWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WDAESKTSYGWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAI
400 410 420 430 440 450
510 520 530 540 550 560
pF1KB5 GKAYKKDAKLVMEYLAICDECYITEMEMLLNEKGEFTIETEGKTFQLTKDMINVKRFQKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GKAYKKDAKLVMEYLAICDECYITEMEMLLNEKGEFTIETEGKTFQLTKDMINVKRFQKT
460 470 480 490 500 510
570 580 590 600 610 620
pF1KB5 LYVEEVVPNVIEPSFGLGRIMYTVFEHTFHVREGDEQRTFFSFPAVVAPFKCSVLPLSQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LYVEEVVPNVIEPSFGLGRIMYTVFEHTFHVREGDEQRTFFSFPAVVAPFKCSVLPLSQN
520 530 540 550 560 570
630 640 650 660 670 680
pF1KB5 QEFMPFVKELSEALTRHGVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QEFMPFVKELSEALTRHGVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTA
580 590 600 610 620 630
690 700 710 720 730
pF1KB5 TLRDRDSMRQIRAEISELPSIVQDLANGNITWADVEARYPLFEGQETGKKETIEE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLRDRDSMRQIRAEISELPSIVQDLANGNITWADVEARYPLFEGQETGKKETIEE
640 650 660 670 680
>>XP_006715749 (OMIM: 600287,600794,601472) PREDICTED: g (616 aa)
initn: 4117 init1: 4117 opt: 4117 Z-score: 4584.9 bits: 858.7 E(85289): 0
Smith-Waterman score: 4117; 100.0% identity (100.0% similar) in 616 aa overlap (124-739:1-616)
100 110 120 130 140 150
pF1KB5 AVAELKARKRVLEAKELALQPKDDIVDRAKMEDTLKRRFFYDQAFAIYGGVSGLYDFGPV
::::::::::::::::::::::::::::::
XP_006 MEDTLKRRFFYDQAFAIYGGVSGLYDFGPV
10 20 30
160 170 180 190 200 210
pF1KB5 GCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVKDVKNGECFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVKDVKNGECFR
40 50 60 70 80 90
220 230 240 250 260 270
pF1KB5 ADHLLKAHLQKLMSDKKCSVEKKSEMESVLAQLDNYGQQELADLFVNYNVKSPITGNDLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ADHLLKAHLQKLMSDKKCSVEKKSEMESVLAQLDNYGQQELADLFVNYNVKSPITGNDLS
100 110 120 130 140 150
280 290 300 310 320 330
pF1KB5 PPVSFNLMFKTFIGPGGNMPGYLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PPVSFNLMFKTFIGPGGNMPGYLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNE
160 170 180 190 200 210
340 350 360 370 380 390
pF1KB5 ISPRSGLIRVREFTMAEIEHFVDPSEKDHPKFQNVADLHLYLYSAKAQVSGQSARKMRLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ISPRSGLIRVREFTMAEIEHFVDPSEKDHPKFQNVADLHLYLYSAKAQVSGQSARKMRLG
220 230 240 250 260 270
400 410 420 430 440 450
pF1KB5 DAVEQGVINNTVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DAVEQGVINNTVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSY
280 290 300 310 320 330
460 470 480 490 500 510
pF1KB5 GWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAK
340 350 360 370 380 390
520 530 540 550 560 570
pF1KB5 LVMEYLAICDECYITEMEMLLNEKGEFTIETEGKTFQLTKDMINVKRFQKTLYVEEVVPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LVMEYLAICDECYITEMEMLLNEKGEFTIETEGKTFQLTKDMINVKRFQKTLYVEEVVPN
400 410 420 430 440 450
580 590 600 610 620 630
pF1KB5 VIEPSFGLGRIMYTVFEHTFHVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VIEPSFGLGRIMYTVFEHTFHVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKE
460 470 480 490 500 510
640 650 660 670 680 690
pF1KB5 LSEALTRHGVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LSEALTRHGVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMR
520 530 540 550 560 570
700 710 720 730
pF1KB5 QIRAEISELPSIVQDLANGNITWADVEARYPLFEGQETGKKETIEE
::::::::::::::::::::::::::::::::::::::::::::::
XP_006 QIRAEISELPSIVQDLANGNITWADVEARYPLFEGQETGKKETIEE
580 590 600 610
739 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 16:16:34 2016 done: Sat Nov 5 16:16:36 2016
Total Scan time: 11.870 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]