FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5796, 780 aa
  1>>>pF1KB5796 780 - 780 aa - 780 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.7440+/-0.0012; mu= 3.6987+/- 0.071
 mean_var=171.3695+/-36.196, 0's: 0 Z-trim(107.4): 121  B-trim: 0 in 0/51
 Lambda= 0.097973
 statistics sampled from 9449 (9562) to 9449 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.642), E-opt: 0.2 (0.294), width:  16
 Scan time:  4.040

The best scores are:                                      opt bits E(32554)
CCDS8127.1 CATSPER1 gene_id:117144|Hs108|chr11     ( 780) 5371 772.2       0


>>CCDS8127.1 CATSPER1 gene_id:117144|Hs108|chr11          (780 aa)
 initn: 5371 init1: 5371 opt: 5371  Z-score: 4115.1  bits: 772.2 E(32554):    0
Smith-Waterman score: 5371; 99.7% identity (100.0% similar) in 780 aa overlap (1-780:1-780)

               10        20        30        40        50        60
pF1KB5 MDQNSVPEKAQNEADTNNADRFFRSHSSPPHHRPGHSRALHHYELHHHGVPHQRGESHHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MDQNSVPEKAQNEADTNNADRFFRSHSSPPHHRPGHSRALHHYELHHHGVPHQRGESHHP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 PEFQDFHDQALSSHVHQSHHHSEARNHGRAHGPTGFGLAPSQGAVPSHRSYGEDYHDELQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 PEFQDFHDQALSSHVHQSHHHSEARNHGRAHGPTGFGLAPSQGAVPSHRSYGEDYHDELQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 RDGRRHHDGSQYSGFHQQSDSHYHRGSHHGRPQYLGENLSHYSSGVPHHGEASHHGGSYL
       ::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 RDGRRHHDGSQYGGFHQQSDSHYHRGSHHGRPQYLGENLSHYSSGVPHHGEASHHGGSYL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 PHGPNPYSESFHHSEASHLSGLQHDESQHHQVPHRGWPHHHQVHHHGRSRHHEAHQHGKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 PHGPNPYSESFHHSEASHLSGLQHDESQHHQVPHRGWPHHHQVHHHGRSRHHEAHQHGKS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 PHHGETISPHSSVGSYQRGISDYHSEYHQGDHHPSEYHHGDHPHHTQHHYHQTHRHRDYH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 PHHGETISPHSSVGSYQRGISDYHSEYHQGDHHPSEYHHGDHPHHTQHHYHQTHRHRDYH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 QHQDHHGAYHSSYLHGDYVQSTSQLSIPHTSRSLIHDAPGPAASRTGVFPYHVAHPRGSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 QHQDHHGAYHSSYLHGDYVQSTSQLSIPHTSRSLIHDAPGPAASRTGVFPYHVAHPRGSA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 HSMTRSSSTIRSRVTQMSKKVHTQDISTKHSEDWGKEEGQFQKRKTGRLQRTRKKGHSTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 HSMTRSSSTIRSRVTQMSKKVHTQDISTKHSEDWGKEEGQFQKRKTGRLQRTRKKGHSTN
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 LFQWLWEKLTFLIQGFREMIRNLTQSLAFETFIFFVVCLNTVMLVAQTFAEVEIRGEWYF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LFQWLWEKLTFLIQGFREMIRNLTQSLAFETFIFFVVCLNTVMLVAQTFAEVEIRGEWYF
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 MALDSIFFCIYVVEALLKIIALGLSYFFDFWNNLDFFIMAMAVLDFLLMQTHSFAIYHQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MALDSIFFCIYVVEALLKIIALGLSYFFDFWNNLDFFIMAMAVLDFLLMQTHSFAIYHQS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB5 LFRILKVFKSLRALRAIRVLRRLSFLTSVQEVTGTLGQSLPSIAAILILMFTCLFLFSAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LFRILKVFKSLRALRAIRVLRRLSFLTSVQEVTGTLGQSLPSIAAILILMFTCLFLFSAV
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB5 LRALFRKSDPKRFQNIFTTIFTLFTLLTLDDWSLIYMDSRAQGAWYIIPILIIYIIIQYF
       :::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
CCDS81 LRALFRKSDPKRFQNIFTTIFTLFTLLTLDDWSLIYMDSRAQGAWYIIPILVIYIIIQYF
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB5 IFLNLVITVLVDSFQTALFKGLEKAKQERAARIQEKLLEDSLTELRAAEPKEVASEGTML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 IFLNLVITVLVDSFQTALFKGLEKAKQERAARIQEKLLEDSLTELRAAEPKEVASEGTML
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB5 KRLIEKKFGTMTEKQQELLFHYLQLVASVEQEQQKFRSQAAVIDEIVDTTFEAGEEDFRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 KRLIEKKFGTMTEKQQELLFHYLQLVASVEQEQQKFRSQAAVIDEIVDTTFEAGEEDFRN
              730       740       750       760       770       780




780 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:22:35 2016 done: Sat Nov  5 18:22:36 2016
 Total Scan time:  4.040 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]