FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5815, 471 aa
  1>>>pF1KB5815 471 - 471 aa - 471 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2677+/-0.00106; mu= 10.7667+/- 0.063
 mean_var=237.1765+/-50.214, 0's: 0 Z-trim(110.3): 98  B-trim: 675 in 1/53
 Lambda= 0.083280
 statistics sampled from 11396 (11481) to 11396 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.353), width:  16
 Scan time:  3.390

The best scores are:                                      opt bits E(32554)
CCDS46197.1 U2AF2 gene_id:11338|Hs108|chr19        ( 471) 3169 394.2 1.6e-109
CCDS12933.1 U2AF2 gene_id:11338|Hs108|chr19        ( 475) 3151 392.0 7.1e-109


>>CCDS46197.1 U2AF2 gene_id:11338|Hs108|chr19             (471 aa)
 initn: 3169 init1: 3169 opt: 3169  Z-score: 2079.8  bits: 394.2 E(32554): 1.6e-109
Smith-Waterman score: 3169; 100.0% identity (100.0% similar) in 471 aa overlap (1-471:1-471)

               10        20        30        40        50        60
pF1KB5 MSDFDEFERQLNENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSASRDRRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MSDFDEFERQLNENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSASRDRRR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 RSKPLTRGAKEEHGGLIRSPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPATA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 RSKPLTRGAKEEHGGLIRSPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPATA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 LLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 APGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 APGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 NPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 NPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 GYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLSTINQTPVTLQVPGLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLSTINQTPVTLQVPGLM
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 SSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGV
              370       380       390       400       410       420

              430       440       450       460       470 
pF1KB5 EVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRDFW
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRDFW
              430       440       450       460       470 

>>CCDS12933.1 U2AF2 gene_id:11338|Hs108|chr19             (475 aa)
 initn: 3155 init1: 2295 opt: 3151  Z-score: 2068.1  bits: 392.0 E(32554): 7.1e-109
Smith-Waterman score: 3151; 99.2% identity (99.2% similar) in 475 aa overlap (1-471:1-475)

               10        20        30        40        50        60
pF1KB5 MSDFDEFERQLNENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSASRDRRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MSDFDEFERQLNENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSASRDRRR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 RSKPLTRGAKEEHGGLIRSPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPATA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RSKPLTRGAKEEHGGLIRSPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPATA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 LLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 APGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 APGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 NPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 NPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK
              250       260       270       280       290       300

              310       320       330       340           350      
pF1KB5 GYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATL----STINQTPVTLQV
       ::::::::::::::::::::::::::::::::::::::::::::    ::::::::::::
CCDS12 GYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSPPSTINQTPVTLQV
              310       320       330       340       350       360

        360       370       380       390       400       410      
pF1KB5 PGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRP
              370       380       390       400       410       420

        420       430       440       450       460       470 
pF1KB5 VDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRDFW
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRDFW
              430       440       450       460       470     




471 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 10:25:02 2016 done: Sat Nov  5 10:25:03 2016
 Total Scan time:  3.390 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]