FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5817, 212 aa
  1>>>pF1KB5817 212 - 212 aa - 212 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0781+/-0.000819; mu= 10.0659+/- 0.049
 mean_var=76.2452+/-15.017, 0's: 0 Z-trim(107.5): 9  B-trim: 74 in 1/51
 Lambda= 0.146882
 statistics sampled from 9619 (9622) to 9619 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.684), E-opt: 0.2 (0.296), width:  16
 Scan time:  2.190

The best scores are:                                      opt bits E(32554)
CCDS9972.1 CINP gene_id:51550|Hs108|chr14          ( 212) 1381 301.7 2.3e-82


>>CCDS9972.1 CINP gene_id:51550|Hs108|chr14               (212 aa)
 initn: 1381 init1: 1381 opt: 1381  Z-score: 1592.3  bits: 301.7 E(32554): 2.3e-82
Smith-Waterman score: 1381; 100.0% identity (100.0% similar) in 212 aa overlap (1-212:1-212)

               10        20        30        40        50        60
pF1KB5 MEAKTLGTVTPRKPVLSVSARKIKDNAADWHNLILKWETLNDAGFTTANNIANLKISLLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 MEAKTLGTVTPRKPVLSVSARKIKDNAADWHNLILKWETLNDAGFTTANNIANLKISLLN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 KDKIELDSSSPASKENEEKVCLEYNEELEKLCEELQATLDGLTKIQVKMEKLSSTTKGIC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 KDKIELDSSSPASKENEEKVCLEYNEELEKLCEELQATLDGLTKIQVKMEKLSSTTKGIC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 ELENYHYGEESKRPPLFHTWPTTHFYEVSHKLLEMYRKELLLKRTVAKELAHTGDPDLTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 ELENYHYGEESKRPPLFHTWPTTHFYEVSHKLLEMYRKELLLKRTVAKELAHTGDPDLTL
              130       140       150       160       170       180

              190       200       210  
pF1KB5 SYLSMWLHQPYVESDSRLHLESMLLETGHRAL
       ::::::::::::::::::::::::::::::::
CCDS99 SYLSMWLHQPYVESDSRLHLESMLLETGHRAL
              190       200       210  




212 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 10:25:38 2016 done: Sat Nov  5 10:25:38 2016
 Total Scan time:  2.190 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]