FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5817, 212 aa
  1>>>pF1KB5817 212 - 212 aa - 212 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8230+/-0.000341; mu= 11.8029+/- 0.021
 mean_var=81.5765+/-16.180, 0's: 0 Z-trim(115.2): 7  B-trim: 188 in 1/53
 Lambda= 0.142001
 statistics sampled from 25557 (25561) to 25557 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.682), E-opt: 0.2 (0.3), width:  16
 Scan time:  6.550

The best scores are:                                      opt bits E(85289)
NP_116019 (OMIM: 613362) cyclin-dependent kinase 2 ( 212) 1381 292.1 4.4e-79
NP_001306975 (OMIM: 613362) cyclin-dependent kinas ( 118)  655 143.3 1.6e-34


>>NP_116019 (OMIM: 613362) cyclin-dependent kinase 2-int  (212 aa)
 initn: 1381 init1: 1381 opt: 1381  Z-score: 1540.8  bits: 292.1 E(85289): 4.4e-79
Smith-Waterman score: 1381; 100.0% identity (100.0% similar) in 212 aa overlap (1-212:1-212)

               10        20        30        40        50        60
pF1KB5 MEAKTLGTVTPRKPVLSVSARKIKDNAADWHNLILKWETLNDAGFTTANNIANLKISLLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 MEAKTLGTVTPRKPVLSVSARKIKDNAADWHNLILKWETLNDAGFTTANNIANLKISLLN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 KDKIELDSSSPASKENEEKVCLEYNEELEKLCEELQATLDGLTKIQVKMEKLSSTTKGIC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 KDKIELDSSSPASKENEEKVCLEYNEELEKLCEELQATLDGLTKIQVKMEKLSSTTKGIC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 ELENYHYGEESKRPPLFHTWPTTHFYEVSHKLLEMYRKELLLKRTVAKELAHTGDPDLTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 ELENYHYGEESKRPPLFHTWPTTHFYEVSHKLLEMYRKELLLKRTVAKELAHTGDPDLTL
              130       140       150       160       170       180

              190       200       210  
pF1KB5 SYLSMWLHQPYVESDSRLHLESMLLETGHRAL
       ::::::::::::::::::::::::::::::::
NP_116 SYLSMWLHQPYVESDSRLHLESMLLETGHRAL
              190       200       210  

>>NP_001306975 (OMIM: 613362) cyclin-dependent kinase 2-  (118 aa)
 initn: 655 init1: 655 opt: 655  Z-score: 740.8  bits: 143.3 E(85289): 1.6e-34
Smith-Waterman score: 655; 95.3% identity (99.1% similar) in 107 aa overlap (1-107:1-107)

               10        20        30        40        50        60
pF1KB5 MEAKTLGTVTPRKPVLSVSARKIKDNAADWHNLILKWETLNDAGFTTANNIANLKISLLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEAKTLGTVTPRKPVLSVSARKIKDNAADWHNLILKWETLNDAGFTTANNIANLKISLLN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 KDKIELDSSSPASKENEEKVCLEYNEELEKLCEELQATLDGLTKIQVKMEKLSSTTKGIC
       :::::::::::::::::::::::::::::::::::::::::: ....             
NP_001 KDKIELDSSSPASKENEEKVCLEYNEELEKLCEELQATLDGLMRFRISSWRCTGRSCS  
               70        80        90       100       110          

              130       140       150       160       170       180
pF1KB5 ELENYHYGEESKRPPLFHTWPTTHFYEVSHKLLEMYRKELLLKRTVAKELAHTGDPDLTL




212 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 10:25:39 2016 done: Sat Nov  5 10:25:40 2016
 Total Scan time:  6.550 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]