FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5818, 476 aa
  1>>>pF1KB5818 476 - 476 aa - 476 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9146+/-0.000726; mu= 11.4178+/- 0.044
 mean_var=113.9173+/-22.561, 0's: 0 Z-trim(112.6): 23  B-trim: 9 in 2/51
 Lambda= 0.120165
 statistics sampled from 13288 (13301) to 13288 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.409), width:  16
 Scan time:  3.680

The best scores are:                                      opt bits E(32554)
CCDS35251.1 GPKOW gene_id:27238|Hs108|chrX         ( 476) 3183 562.4 3.8e-160


>>CCDS35251.1 GPKOW gene_id:27238|Hs108|chrX              (476 aa)
 initn: 3183 init1: 3183 opt: 3183  Z-score: 2988.6  bits: 562.4 E(32554): 3.8e-160
Smith-Waterman score: 3183; 100.0% identity (100.0% similar) in 476 aa overlap (1-476:1-476)

               10        20        30        40        50        60
pF1KB5 MADSKEGVLPLTAASTAPISFGFTRTSARRRLADSGDGAGPSPEEKDFLKTVEGRELQSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MADSKEGVLPLTAASTAPISFGFTRTSARRRLADSGDGAGPSPEEKDFLKTVEGRELQSV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 KPQEAPKELVIPLIQNGHRRQPPARPPGPSTDTGALADGVVSQAVKELIAESKKSLEERE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 KPQEAPKELVIPLIQNGHRRQPPARPPGPSTDTGALADGVVSQAVKELIAESKKSLEERE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 NAGVDPTLAIPMIQKGCTPSGEGADSEPRAETVPEEANYEAVPVEAYGLAMLRGMGWKPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 NAGVDPTLAIPMIQKGCTPSGEGADSEPRAETVPEEANYEAVPVEAYGLAMLRGMGWKPG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 EGIGRTFNQVVKPRVNSLRPKGLGLGANLTEAQALTPTGPSRMPRPDEEQEKDKEDQPQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 EGIGRTFNQVVKPRVNSLRPKGLGLGANLTEAQALTPTGPSRMPRPDEEQEKDKEDQPQG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 LVPGGAVVVLSGPHRGLYGKVEGLDPDNVRAMVRLAVGSRVVTVSEYYLRPVSQQEFDKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LVPGGAVVVLSGPHRGLYGKVEGLDPDNVRAMVRLAVGSRVVTVSEYYLRPVSQQEFDKN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 TLDLRQQNGTASSRKTLWNQELYIQQDNSERKRKHLPDRQDGPAAKSEKAAPRSQHWLHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 TLDLRQQNGTASSRKTLWNQELYIQQDNSERKRKHLPDRQDGPAAKSEKAAPRSQHWLHR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 DLRVRFVDNMYKGGQYYNTKMIIEDVLSPDTCVCRTDEGRVLEGLREDMLETLVPKAEGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 DLRVRFVDNMYKGGQYYNTKMIIEDVLSPDTCVCRTDEGRVLEGLREDMLETLVPKAEGD
              370       380       390       400       410       420

              430       440       450       460       470      
pF1KB5 RVMVVLGPQTGRVGHLLSRDRARSRALVQLPRENQVVELHYDAICQYMGPSDTDDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 RVMVVLGPQTGRVGHLLSRDRARSRALVQLPRENQVVELHYDAICQYMGPSDTDDD
              430       440       450       460       470      




476 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 04:43:52 2016 done: Mon Nov  7 04:43:53 2016
 Total Scan time:  3.680 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]