FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5827, 689 aa
  1>>>pF1KB5827 689 - 689 aa - 689 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8930+/-0.000817; mu= 13.2287+/- 0.050
 mean_var=103.1085+/-21.133, 0's: 0 Z-trim(111.3): 3  B-trim: 181 in 1/50
 Lambda= 0.126307
 statistics sampled from 12247 (12249) to 12247 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.728), E-opt: 0.2 (0.376), width:  16
 Scan time:  3.270

The best scores are:                                      opt bits E(32554)
CCDS42664.1 TMEM214 gene_id:54867|Hs108|chr2       ( 689) 4653 858.4       0
CCDS46242.1 TMEM214 gene_id:54867|Hs108|chr2       ( 644) 3239 600.7 2.2e-171


>>CCDS42664.1 TMEM214 gene_id:54867|Hs108|chr2            (689 aa)
 initn: 4653 init1: 4653 opt: 4653  Z-score: 4582.6  bits: 858.4 E(32554):    0
Smith-Waterman score: 4653; 100.0% identity (100.0% similar) in 689 aa overlap (1-689:1-689)

               10        20        30        40        50        60
pF1KB5 MATKTAGVGRWEVVKKGRRPGVGAGAGGRGGGRNRRALGEANGVWKYDLTPAIQTTSTLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MATKTAGVGRWEVVKKGRRPGVGAGAGGRGGGRNRRALGEANGVWKYDLTPAIQTTSTLY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 ERGFENIMKRQNKEQVPPPAVEPKKPGNKKQPKKVATPPNQNQKQGRFRSLEEALKALDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ERGFENIMKRQNKEQVPPPAVEPKKPGNKKQPKKVATPPNQNQKQGRFRSLEEALKALDV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 ADLQKELDKSQSVFSGNPSIWLKDLASYLNYKLQAPLSEPTLSQHTHDYPYSLVSRELRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ADLQKELDKSQSVFSGNPSIWLKDLASYLNYKLQAPLSEPTLSQHTHDYPYSLVSRELRG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 IIRGLLAKAAGSLELFFDHCLFTMLQELDKTPGESLHGYRICIQAILQDKPKIATANLGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 IIRGLLAKAAGSLELFFDHCLFTMLQELDKTPGESLHGYRICIQAILQDKPKIATANLGK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 FLELLRSHQSRPAKCLTIMWALGQAGFANLTEGLKVWLGIMLPVLGIKSLSPFAITYLDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 FLELLRSHQSRPAKCLTIMWALGQAGFANLTEGLKVWLGIMLPVLGIKSLSPFAITYLDR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 LLLMHPNLTKGFGMIGPKDFFPLLDFAYMPNNSLTPSLQEQLCQLYPRLKVLAFGAKPDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LLLMHPNLTKGFGMIGPKDFFPLLDFAYMPNNSLTPSLQEQLCQLYPRLKVLAFGAKPDS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 TLHTYFPSFLSRATPSCPPEMKKELLSSLTECLTVDPLSASVWRQLYPKHLSQSSLLLEH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TLHTYFPSFLSRATPSCPPEMKKELLSSLTECLTVDPLSASVWRQLYPKHLSQSSLLLEH
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 LLSSWEQIPKKVQKSLQETIQSLKLTNQELLRKGSSNNQDVVTCDMACKGLLQQVQGPRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LLSSWEQIPKKVQKSLQETIQSLKLTNQELLRKGSSNNQDVVTCDMACKGLLQQVQGPRL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 PWTRLLLLLLVFAVGFLCHDLRSHSSFQASLTGRLLRSSGFLPASQQACAKLYSYSLQGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PWTRLLLLLLVFAVGFLCHDLRSHSSFQASLTGRLLRSSGFLPASQQACAKLYSYSLQGY
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB5 SWLGETLPLWGSHLLTVVRPSLQLAWAHTNATVSFLSAHCASHLAWFGDSLTSLSQRLQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SWLGETLPLWGSHLLTVVRPSLQLAWAHTNATVSFLSAHCASHLAWFGDSLTSLSQRLQI
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB5 QLPDSVNQLLRYLRELPLLFHQNVLLPLWHLLLEALAWAQEHCHEACRGEVTWDCMKTQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QLPDSVNQLLRYLRELPLLFHQNVLLPLWHLLLEALAWAQEHCHEACRGEVTWDCMKTQL
              610       620       630       640       650       660

              670       680         
pF1KB5 SEAVHWTWLCLQDITVAFLDWALALISQQ
       :::::::::::::::::::::::::::::
CCDS42 SEAVHWTWLCLQDITVAFLDWALALISQQ
              670       680         

>>CCDS46242.1 TMEM214 gene_id:54867|Hs108|chr2            (644 aa)
 initn: 3239 init1: 3239 opt: 3239  Z-score: 3190.5  bits: 600.7 E(32554): 2.2e-171
Smith-Waterman score: 4257; 93.5% identity (93.5% similar) in 689 aa overlap (1-689:1-644)

               10        20        30        40        50        60
pF1KB5 MATKTAGVGRWEVVKKGRRPGVGAGAGGRGGGRNRRALGEANGVWKYDLTPAIQTTSTLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MATKTAGVGRWEVVKKGRRPGVGAGAGGRGGGRNRRALGEANGVWKYDLTPAIQTTSTLY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 ERGFENIMKRQNKEQVPPPAVEPKKPGNKKQPKKVATPPNQNQKQGRFRSLEEALKALDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ERGFENIMKRQNKEQVPPPAVEPKKPGNKKQPKKVATPPNQNQKQGRFRSLEEALKALDV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 ADLQKELDKSQSVFSGNPSIWLKDLASYLNYKLQAPLSEPTLSQHTHDYPYSLVSRELRG
       :::::::::::::::::::::::::::::::::::::::::::::::             
CCDS46 ADLQKELDKSQSVFSGNPSIWLKDLASYLNYKLQAPLSEPTLSQHTH-------------
              130       140       150       160                    

              190       200       210       220       230       240
pF1KB5 IIRGLLAKAAGSLELFFDHCLFTMLQELDKTPGESLHGYRICIQAILQDKPKIATANLGK
                                       ::::::::::::::::::::::::::::
CCDS46 --------------------------------GESLHGYRICIQAILQDKPKIATANLGK
                                       170       180       190     

              250       260       270       280       290       300
pF1KB5 FLELLRSHQSRPAKCLTIMWALGQAGFANLTEGLKVWLGIMLPVLGIKSLSPFAITYLDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 FLELLRSHQSRPAKCLTIMWALGQAGFANLTEGLKVWLGIMLPVLGIKSLSPFAITYLDR
         200       210       220       230       240       250     

              310       320       330       340       350       360
pF1KB5 LLLMHPNLTKGFGMIGPKDFFPLLDFAYMPNNSLTPSLQEQLCQLYPRLKVLAFGAKPDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LLLMHPNLTKGFGMIGPKDFFPLLDFAYMPNNSLTPSLQEQLCQLYPRLKVLAFGAKPDS
         260       270       280       290       300       310     

              370       380       390       400       410       420
pF1KB5 TLHTYFPSFLSRATPSCPPEMKKELLSSLTECLTVDPLSASVWRQLYPKHLSQSSLLLEH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 TLHTYFPSFLSRATPSCPPEMKKELLSSLTECLTVDPLSASVWRQLYPKHLSQSSLLLEH
         320       330       340       350       360       370     

              430       440       450       460       470       480
pF1KB5 LLSSWEQIPKKVQKSLQETIQSLKLTNQELLRKGSSNNQDVVTCDMACKGLLQQVQGPRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LLSSWEQIPKKVQKSLQETIQSLKLTNQELLRKGSSNNQDVVTCDMACKGLLQQVQGPRL
         380       390       400       410       420       430     

              490       500       510       520       530       540
pF1KB5 PWTRLLLLLLVFAVGFLCHDLRSHSSFQASLTGRLLRSSGFLPASQQACAKLYSYSLQGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PWTRLLLLLLVFAVGFLCHDLRSHSSFQASLTGRLLRSSGFLPASQQACAKLYSYSLQGY
         440       450       460       470       480       490     

              550       560       570       580       590       600
pF1KB5 SWLGETLPLWGSHLLTVVRPSLQLAWAHTNATVSFLSAHCASHLAWFGDSLTSLSQRLQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SWLGETLPLWGSHLLTVVRPSLQLAWAHTNATVSFLSAHCASHLAWFGDSLTSLSQRLQI
         500       510       520       530       540       550     

              610       620       630       640       650       660
pF1KB5 QLPDSVNQLLRYLRELPLLFHQNVLLPLWHLLLEALAWAQEHCHEACRGEVTWDCMKTQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QLPDSVNQLLRYLRELPLLFHQNVLLPLWHLLLEALAWAQEHCHEACRGEVTWDCMKTQL
         560       570       580       590       600       610     

              670       680         
pF1KB5 SEAVHWTWLCLQDITVAFLDWALALISQQ
       :::::::::::::::::::::::::::::
CCDS46 SEAVHWTWLCLQDITVAFLDWALALISQQ
         620       630       640    




689 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 04:44:31 2016 done: Mon Nov  7 04:44:32 2016
 Total Scan time:  3.270 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]