FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5829, 124 aa
  1>>>pF1KB5829 124 - 124 aa - 124 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9859+/-0.000536; mu= 12.8872+/- 0.032
 mean_var=61.6769+/-12.718, 0's: 0 Z-trim(113.6): 9  B-trim: 722 in 1/50
 Lambda= 0.163310
 statistics sampled from 14182 (14187) to 14182 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.804), E-opt: 0.2 (0.436), width:  16
 Scan time:  1.860

The best scores are:                                      opt bits E(32554)
CCDS8480.2 TP53AIP1 gene_id:63970|Hs108|chr11      ( 124)  817 199.7 3.8e-52
CCDS55798.1 TP53AIP1 gene_id:63970|Hs108|chr11     ( 120)  773 189.4 4.8e-49
CCDS55797.1 TP53AIP1 gene_id:63970|Hs108|chr11     (  86)  573 142.1 5.6e-35
CCDS58195.1 TP53AIP1 gene_id:63970|Hs108|chr11     ( 108)  337 86.6 3.7e-18


>>CCDS8480.2 TP53AIP1 gene_id:63970|Hs108|chr11           (124 aa)
 initn: 817 init1: 817 opt: 817  Z-score: 1049.8  bits: 199.7 E(32554): 3.8e-52
Smith-Waterman score: 817; 98.4% identity (98.4% similar) in 124 aa overlap (1-124:1-124)

               10        20        30        40        50        60
pF1KB5 MGSSSEASFRSAQASCSGARRQGLGRGDQNLSVMPPNGRAQTHTPGWVSDPLVLGAQVHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 MGSSSEASFRSAQASCSGARRQGLGRGDQNLSVMPPNGRAQTHTPGWVSDPLVLGAQVHG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 GCRGIEALSVSSGSWSSATVWILTGLGLGLSRPFLPGATVLGDRSLGSAFELSYDQKKAP
       ::::::::::::::::::::::::::::::::::::::::: :: :::::::::::::::
CCDS84 GCRGIEALSVSSGSWSSATVWILTGLGLGLSRPFLPGATVLRDRPLGSAFELSYDQKKAP
               70        80        90       100       110       120

           
pF1KB5 LRLQ
       ::::
CCDS84 LRLQ
           

>>CCDS55798.1 TP53AIP1 gene_id:63970|Hs108|chr11          (120 aa)
 initn: 586 init1: 586 opt: 773  Z-score: 994.0  bits: 189.4 E(32554): 4.8e-49
Smith-Waterman score: 773; 95.2% identity (95.2% similar) in 124 aa overlap (1-124:1-120)

               10        20        30        40        50        60
pF1KB5 MGSSSEASFRSAQASCSGARRQGLGRGDQNLSVMPPNGRAQTHTPGWVSDPLVLGAQVHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MGSSSEASFRSAQASCSGARRQGLGRGDQNLSVMPPNGRAQTHTPGWVSDPLVLGAQVHG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 GCRGIEALSVSSGSWSSATVWILTGLGLGLSRPFLPGATVLGDRSLGSAFELSYDQKKAP
       :::::::::::::::::::::::::    :::::::::::: :: :::::::::::::::
CCDS55 GCRGIEALSVSSGSWSSATVWILTG----LSRPFLPGATVLRDRPLGSAFELSYDQKKAP
               70        80            90       100       110      

           
pF1KB5 LRLQ
       ::::
CCDS55 LRLQ
        120

>>CCDS55797.1 TP53AIP1 gene_id:63970|Hs108|chr11          (86 aa)
 initn: 573 init1: 573 opt: 573  Z-score: 741.4  bits: 142.1 E(32554): 5.6e-35
Smith-Waterman score: 573; 100.0% identity (100.0% similar) in 84 aa overlap (1-84:1-84)

               10        20        30        40        50        60
pF1KB5 MGSSSEASFRSAQASCSGARRQGLGRGDQNLSVMPPNGRAQTHTPGWVSDPLVLGAQVHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MGSSSEASFRSAQASCSGARRQGLGRGDQNLSVMPPNGRAQTHTPGWVSDPLVLGAQVHG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 GCRGIEALSVSSGSWSSATVWILTGLGLGLSRPFLPGATVLGDRSLGSAFELSYDQKKAP
       ::::::::::::::::::::::::                                    
CCDS55 GCRGIEALSVSSGSWSSATVWILTVQ                                  
               70        80                                        

>>CCDS58195.1 TP53AIP1 gene_id:63970|Hs108|chr11          (108 aa)
 initn: 346 init1: 337 opt: 337  Z-score: 439.5  bits: 86.6 E(32554): 3.7e-18
Smith-Waterman score: 337; 100.0% identity (100.0% similar) in 49 aa overlap (1-49:1-49)

               10        20        30        40        50        60
pF1KB5 MGSSSEASFRSAQASCSGARRQGLGRGDQNLSVMPPNGRAQTHTPGWVSDPLVLGAQVHG
       :::::::::::::::::::::::::::::::::::::::::::::::::           
CCDS58 MGSSSEASFRSAQASCSGARRQGLGRGDQNLSVMPPNGRAQTHTPGWVSPCSENRDGLLP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 GCRGIEALSVSSGSWSSATVWILTGLGLGLSRPFLPGATVLGDRSLGSAFELSYDQKKAP
                                                                   
CCDS58 ATAPGRLCSHRGADIPSFQTHQDPVTASGSSELHADCPQFRALDRAGN            
               70        80        90       100                    




124 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 15:04:07 2016 done: Sat Nov  5 15:04:08 2016
 Total Scan time:  1.860 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]