FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5835, 530 aa
  1>>>pF1KB5835 530 - 530 aa - 530 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9244+/-0.000832; mu= 16.0291+/- 0.050
 mean_var=89.5893+/-18.079, 0's: 0 Z-trim(109.4): 5  B-trim: 187 in 1/50
 Lambda= 0.135502
 statistics sampled from 10886 (10888) to 10886 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.706), E-opt: 0.2 (0.334), width:  16
 Scan time:  3.560

The best scores are:                                      opt bits E(32554)
CCDS33229.1 M1AP gene_id:130951|Hs108|chr2         ( 530) 3591 712.1 3.9e-205
CCDS62941.1 M1AP gene_id:130951|Hs108|chr2         ( 526) 3534 701.0 8.8e-202


>>CCDS33229.1 M1AP gene_id:130951|Hs108|chr2              (530 aa)
 initn: 3591 init1: 3591 opt: 3591  Z-score: 3796.3  bits: 712.1 E(32554): 3.9e-205
Smith-Waterman score: 3591; 100.0% identity (100.0% similar) in 530 aa overlap (1-530:1-530)

               10        20        30        40        50        60
pF1KB5 MHPGRTTGKGPSTHTQIDQQPPRLLIVHIALPSWADICTNLCEALQNFFSLACSLMGPSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MHPGRTTGKGPSTHTQIDQQPPRLLIVHIALPSWADICTNLCEALQNFFSLACSLMGPSR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 MSLFSLYMVQDQHECILPFVQVKGNFARLQTCISELRMLQREGCFRSQGASLRLAVEDGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MSLFSLYMVQDQHECILPFVQVKGNFARLQTCISELRMLQREGCFRSQGASLRLAVEDGL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 QQFKQYSRHVTTRAALTYTSLEITILTSQPGKEVVKQLEEGLKDTDLARVRRFQVVEVTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QQFKQYSRHVTTRAALTYTSLEITILTSQPGKEVVKQLEEGLKDTDLARVRRFQVVEVTK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 GILEHVDSASPVEDTSNDESSILGTDIDLQTIDNDIVSMEIFFKAWLHNSGTDQEQIHLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GILEHVDSASPVEDTSNDESSILGTDIDLQTIDNDIVSMEIFFKAWLHNSGTDQEQIHLL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 LSSQCFSNISRPRDNPMCLKCDLQERLLCPSLLAGTADGSLRMDDPKGDFITLYQMASQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LSSQCFSNISRPRDNPMCLKCDLQERLLCPSLLAGTADGSLRMDDPKGDFITLYQMASQS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 SASHYKLQVIKALKSSGLCESLTYGLPFILRPTSCWQLDWDELETNQQHFHALCHSLLKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SASHYKLQVIKALKSSGLCESLTYGLPFILRPTSCWQLDWDELETNQQHFHALCHSLLKR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 EWLLLAKGEPPGPGHSQRIPASTFYVIMPSHSLTLLVKAVATRELMLPSTFPLLPEDPHD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EWLLLAKGEPPGPGHSQRIPASTFYVIMPSHSLTLLVKAVATRELMLPSTFPLLPEDPHD
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 DSLKNVESMLDSLELEPTYNPLHVQSHLYSHLSSIYAKPQGRLHPHWESRAPRKHPCKTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DSLKNVESMLDSLELEPTYNPLHVQSHLYSHLSSIYAKPQGRLHPHWESRAPRKHPCKTG
              430       440       450       460       470       480

              490       500       510       520       530
pF1KB5 QLQTNRARATVAPLPMTPVPGRASKMPAASKSSSDAFFLPSEWEKDPSRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QLQTNRARATVAPLPMTPVPGRASKMPAASKSSSDAFFLPSEWEKDPSRP
              490       500       510       520       530

>>CCDS62941.1 M1AP gene_id:130951|Hs108|chr2              (526 aa)
 initn: 3201 init1: 3201 opt: 3534  Z-score: 3736.1  bits: 701.0 E(32554): 8.8e-202
Smith-Waterman score: 3534; 99.2% identity (99.2% similar) in 530 aa overlap (1-530:1-526)

               10        20        30        40        50        60
pF1KB5 MHPGRTTGKGPSTHTQIDQQPPRLLIVHIALPSWADICTNLCEALQNFFSLACSLMGPSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MHPGRTTGKGPSTHTQIDQQPPRLLIVHIALPSWADICTNLCEALQNFFSLACSLMGPSR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 MSLFSLYMVQDQHECILPFVQVKGNFARLQTCISELRMLQREGCFRSQGASLRLAVEDGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MSLFSLYMVQDQHECILPFVQVKGNFARLQTCISELRMLQREGCFRSQGASLRLAVEDGL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 QQFKQYSRHVTTRAALTYTSLEITILTSQPGKEVVKQLEEGLKDTDLARVRRFQVVEVTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 QQFKQYSRHVTTRAALTYTSLEITILTSQPGKEVVKQLEEGLKDTDLARVRRFQVVEVTK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 GILEHVDSASPVEDTSNDESSILGTDIDLQTIDNDIVSMEIFFKAWLHNSGTDQEQIHLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 GILEHVDSASPVEDTSNDESSILGTDIDLQTIDNDIVSMEIFFKAWLHNSGTDQEQIHLL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 LSSQCFSNISRPRDNPMCLKCDLQERLLCPSLLAGTADGSLRMDDPKGDFITLYQMASQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 LSSQCFSNISRPRDNPMCLKCDLQERLLCPSLLAGTADGSLRMDDPKGDFITLYQMASQS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 SASHYKLQVIKALKSSGLCESLTYGLPFILRPTSCWQLDWDELETNQQHFHALCHSLLKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 SASHYKLQVIKALKSSGLCESLTYGLPFILRPTSCWQLDWDELETNQQHFHALCHSLLKR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 EWLLLAKGEPPGPGHSQRIPASTFYVIMPSHSLTLLVKAVATRELMLPSTFPLLPEDPHD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 EWLLLAKGEPPGPGHSQRIPASTFYVIMPSHSLTLLVKAVATRELMLPSTFPLLPEDPHD
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 DSLKNVESMLDSLELEPTYNPLHVQSHLYSHLSSIYAKPQGRLHPHWESRAPRKHPCKTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::    ::
CCDS62 DSLKNVESMLDSLELEPTYNPLHVQSHLYSHLSSIYAKPQGRLHPHWESRAPRK----TG
              430       440       450       460       470          

              490       500       510       520       530
pF1KB5 QLQTNRARATVAPLPMTPVPGRASKMPAASKSSSDAFFLPSEWEKDPSRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 QLQTNRARATVAPLPMTPVPGRASKMPAASKSSSDAFFLPSEWEKDPSRP
        480       490       500       510       520      




530 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 15:07:03 2016 done: Sat Nov  5 15:07:04 2016
 Total Scan time:  3.560 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]