Result of FASTA (omim) for
pF1KB5837
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5837, 240 aa
1>>>pF1KB5837 240 - 240 aa - 240 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.6527+/-0.000383; mu= -7.0729+/- 0.024
mean_var=424.5419+/-88.167, 0's: 0 Z-trim(125.8): 12 B-trim: 890 in 1/56
Lambda= 0.062246
statistics sampled from 50274 (50286) to 50274 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.841), E-opt: 0.2 (0.59), width: 16
Scan time: 7.180
The best scores are: opt bits E(85289)
NP_057563 (OMIM: 607290) protein shisa-5 isoform a ( 240) 1744 169.4 4.9e-42
NP_001258994 (OMIM: 607290) protein shisa-5 isofor ( 233) 1669 162.7 5.1e-40
XP_011532098 (OMIM: 607290) PREDICTED: protein shi ( 209) 1533 150.4 2.3e-36
NP_001258995 (OMIM: 607290) protein shisa-5 isofor ( 209) 1533 150.4 2.3e-36
NP_001258997 (OMIM: 607290) protein shisa-5 isofor ( 209) 1533 150.4 2.3e-36
XP_006713251 (OMIM: 607290) PREDICTED: protein shi ( 209) 1533 150.4 2.3e-36
NP_001258996 (OMIM: 607290) protein shisa-5 isofor ( 209) 1533 150.4 2.3e-36
XP_005265262 (OMIM: 607290) PREDICTED: protein shi ( 209) 1533 150.4 2.3e-36
NP_001259011 (OMIM: 607290) protein shisa-5 isofor ( 137) 996 102.0 5.6e-22
NP_001259012 (OMIM: 607290) protein shisa-5 isofor ( 118) 819 86.0 3.1e-17
>>NP_057563 (OMIM: 607290) protein shisa-5 isoform a pre (240 aa)
initn: 1744 init1: 1744 opt: 1744 Z-score: 875.6 bits: 169.4 E(85289): 4.9e-42
Smith-Waterman score: 1744; 100.0% identity (100.0% similar) in 240 aa overlap (1-240:1-240)
10 20 30 40 50 60
pF1KB5 MTAPVPAPRILLPLLLLLLLTPPPGARGEVCMASRGLSLFPESCPDFCCGTCDDQYCCSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MTAPVPAPRILLPLLLLLLLTPPPGARGEVCMASRGLSLFPESCPDFCCGTCDDQYCCSD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 VLKKFVWSEERCAVPEASVPASVEPVEQLGSALRFRPGYNDPMSGFGATLAVGLTIFVLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 VLKKFVWSEERCAVPEASVPASVEPVEQLGSALRFRPGYNDPMSGFGATLAVGLTIFVLS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 VVTIIICFTCSCCCLYKTCRRPRPVVTTTTSTTVVHAPYPQPPSVPPSYPGPSYQGYHTM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 VVTIIICFTCSCCCLYKTCRRPRPVVTTTTSTTVVHAPYPQPPSVPPSYPGPSYQGYHTM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 PPQPGMPAAPYPMQYPPPYPAQPMGPPAYHETLAGGAAAPYPASQPPYNPAYMDAPKAAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 PPQPGMPAAPYPMQYPPPYPAQPMGPPAYHETLAGGAAAPYPASQPPYNPAYMDAPKAAL
190 200 210 220 230 240
>>NP_001258994 (OMIM: 607290) protein shisa-5 isoform b (233 aa)
initn: 1183 init1: 1183 opt: 1669 Z-score: 839.4 bits: 162.7 E(85289): 5.1e-40
Smith-Waterman score: 1669; 97.1% identity (97.1% similar) in 240 aa overlap (1-240:1-233)
10 20 30 40 50 60
pF1KB5 MTAPVPAPRILLPLLLLLLLTPPPGARGEVCMASRGLSLFPESCPDFCCGTCDDQYCCSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTAPVPAPRILLPLLLLLLLTPPPGARGEVCMASRGLSLFPESCPDFCCGTCDDQYCCSD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 VLKKFVWSEERCAVPEASVPASVEPVEQLGSALRFRPGYNDPMSGFGATLAVGLTIFVLS
:::::::::: :::::::::::::::::::::::::::::::::::::::::::
NP_001 VLKKFVWSEE-------SVPASVEPVEQLGSALRFRPGYNDPMSGFGATLAVGLTIFVLS
70 80 90 100 110
130 140 150 160 170 180
pF1KB5 VVTIIICFTCSCCCLYKTCRRPRPVVTTTTSTTVVHAPYPQPPSVPPSYPGPSYQGYHTM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVTIIICFTCSCCCLYKTCRRPRPVVTTTTSTTVVHAPYPQPPSVPPSYPGPSYQGYHTM
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB5 PPQPGMPAAPYPMQYPPPYPAQPMGPPAYHETLAGGAAAPYPASQPPYNPAYMDAPKAAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPQPGMPAAPYPMQYPPPYPAQPMGPPAYHETLAGGAAAPYPASQPPYNPAYMDAPKAAL
180 190 200 210 220 230
>>XP_011532098 (OMIM: 607290) PREDICTED: protein shisa-5 (209 aa)
initn: 1533 init1: 1533 opt: 1533 Z-score: 773.9 bits: 150.4 E(85289): 2.3e-36
Smith-Waterman score: 1533; 100.0% identity (100.0% similar) in 209 aa overlap (32-240:1-209)
10 20 30 40 50 60
pF1KB5 TAPVPAPRILLPLLLLLLLTPPPGARGEVCMASRGLSLFPESCPDFCCGTCDDQYCCSDV
::::::::::::::::::::::::::::::
XP_011 MASRGLSLFPESCPDFCCGTCDDQYCCSDV
10 20 30
70 80 90 100 110 120
pF1KB5 LKKFVWSEERCAVPEASVPASVEPVEQLGSALRFRPGYNDPMSGFGATLAVGLTIFVLSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LKKFVWSEERCAVPEASVPASVEPVEQLGSALRFRPGYNDPMSGFGATLAVGLTIFVLSV
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB5 VTIIICFTCSCCCLYKTCRRPRPVVTTTTSTTVVHAPYPQPPSVPPSYPGPSYQGYHTMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VTIIICFTCSCCCLYKTCRRPRPVVTTTTSTTVVHAPYPQPPSVPPSYPGPSYQGYHTMP
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB5 PQPGMPAAPYPMQYPPPYPAQPMGPPAYHETLAGGAAAPYPASQPPYNPAYMDAPKAAL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PQPGMPAAPYPMQYPPPYPAQPMGPPAYHETLAGGAAAPYPASQPPYNPAYMDAPKAAL
160 170 180 190 200
>>NP_001258995 (OMIM: 607290) protein shisa-5 isoform c (209 aa)
initn: 1533 init1: 1533 opt: 1533 Z-score: 773.9 bits: 150.4 E(85289): 2.3e-36
Smith-Waterman score: 1533; 100.0% identity (100.0% similar) in 209 aa overlap (32-240:1-209)
10 20 30 40 50 60
pF1KB5 TAPVPAPRILLPLLLLLLLTPPPGARGEVCMASRGLSLFPESCPDFCCGTCDDQYCCSDV
::::::::::::::::::::::::::::::
NP_001 MASRGLSLFPESCPDFCCGTCDDQYCCSDV
10 20 30
70 80 90 100 110 120
pF1KB5 LKKFVWSEERCAVPEASVPASVEPVEQLGSALRFRPGYNDPMSGFGATLAVGLTIFVLSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKKFVWSEERCAVPEASVPASVEPVEQLGSALRFRPGYNDPMSGFGATLAVGLTIFVLSV
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB5 VTIIICFTCSCCCLYKTCRRPRPVVTTTTSTTVVHAPYPQPPSVPPSYPGPSYQGYHTMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTIIICFTCSCCCLYKTCRRPRPVVTTTTSTTVVHAPYPQPPSVPPSYPGPSYQGYHTMP
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB5 PQPGMPAAPYPMQYPPPYPAQPMGPPAYHETLAGGAAAPYPASQPPYNPAYMDAPKAAL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PQPGMPAAPYPMQYPPPYPAQPMGPPAYHETLAGGAAAPYPASQPPYNPAYMDAPKAAL
160 170 180 190 200
>>NP_001258997 (OMIM: 607290) protein shisa-5 isoform c (209 aa)
initn: 1533 init1: 1533 opt: 1533 Z-score: 773.9 bits: 150.4 E(85289): 2.3e-36
Smith-Waterman score: 1533; 100.0% identity (100.0% similar) in 209 aa overlap (32-240:1-209)
10 20 30 40 50 60
pF1KB5 TAPVPAPRILLPLLLLLLLTPPPGARGEVCMASRGLSLFPESCPDFCCGTCDDQYCCSDV
::::::::::::::::::::::::::::::
NP_001 MASRGLSLFPESCPDFCCGTCDDQYCCSDV
10 20 30
70 80 90 100 110 120
pF1KB5 LKKFVWSEERCAVPEASVPASVEPVEQLGSALRFRPGYNDPMSGFGATLAVGLTIFVLSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKKFVWSEERCAVPEASVPASVEPVEQLGSALRFRPGYNDPMSGFGATLAVGLTIFVLSV
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB5 VTIIICFTCSCCCLYKTCRRPRPVVTTTTSTTVVHAPYPQPPSVPPSYPGPSYQGYHTMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTIIICFTCSCCCLYKTCRRPRPVVTTTTSTTVVHAPYPQPPSVPPSYPGPSYQGYHTMP
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB5 PQPGMPAAPYPMQYPPPYPAQPMGPPAYHETLAGGAAAPYPASQPPYNPAYMDAPKAAL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PQPGMPAAPYPMQYPPPYPAQPMGPPAYHETLAGGAAAPYPASQPPYNPAYMDAPKAAL
160 170 180 190 200
>>XP_006713251 (OMIM: 607290) PREDICTED: protein shisa-5 (209 aa)
initn: 1533 init1: 1533 opt: 1533 Z-score: 773.9 bits: 150.4 E(85289): 2.3e-36
Smith-Waterman score: 1533; 100.0% identity (100.0% similar) in 209 aa overlap (32-240:1-209)
10 20 30 40 50 60
pF1KB5 TAPVPAPRILLPLLLLLLLTPPPGARGEVCMASRGLSLFPESCPDFCCGTCDDQYCCSDV
::::::::::::::::::::::::::::::
XP_006 MASRGLSLFPESCPDFCCGTCDDQYCCSDV
10 20 30
70 80 90 100 110 120
pF1KB5 LKKFVWSEERCAVPEASVPASVEPVEQLGSALRFRPGYNDPMSGFGATLAVGLTIFVLSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LKKFVWSEERCAVPEASVPASVEPVEQLGSALRFRPGYNDPMSGFGATLAVGLTIFVLSV
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB5 VTIIICFTCSCCCLYKTCRRPRPVVTTTTSTTVVHAPYPQPPSVPPSYPGPSYQGYHTMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VTIIICFTCSCCCLYKTCRRPRPVVTTTTSTTVVHAPYPQPPSVPPSYPGPSYQGYHTMP
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB5 PQPGMPAAPYPMQYPPPYPAQPMGPPAYHETLAGGAAAPYPASQPPYNPAYMDAPKAAL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PQPGMPAAPYPMQYPPPYPAQPMGPPAYHETLAGGAAAPYPASQPPYNPAYMDAPKAAL
160 170 180 190 200
>>NP_001258996 (OMIM: 607290) protein shisa-5 isoform c (209 aa)
initn: 1533 init1: 1533 opt: 1533 Z-score: 773.9 bits: 150.4 E(85289): 2.3e-36
Smith-Waterman score: 1533; 100.0% identity (100.0% similar) in 209 aa overlap (32-240:1-209)
10 20 30 40 50 60
pF1KB5 TAPVPAPRILLPLLLLLLLTPPPGARGEVCMASRGLSLFPESCPDFCCGTCDDQYCCSDV
::::::::::::::::::::::::::::::
NP_001 MASRGLSLFPESCPDFCCGTCDDQYCCSDV
10 20 30
70 80 90 100 110 120
pF1KB5 LKKFVWSEERCAVPEASVPASVEPVEQLGSALRFRPGYNDPMSGFGATLAVGLTIFVLSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKKFVWSEERCAVPEASVPASVEPVEQLGSALRFRPGYNDPMSGFGATLAVGLTIFVLSV
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB5 VTIIICFTCSCCCLYKTCRRPRPVVTTTTSTTVVHAPYPQPPSVPPSYPGPSYQGYHTMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTIIICFTCSCCCLYKTCRRPRPVVTTTTSTTVVHAPYPQPPSVPPSYPGPSYQGYHTMP
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB5 PQPGMPAAPYPMQYPPPYPAQPMGPPAYHETLAGGAAAPYPASQPPYNPAYMDAPKAAL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PQPGMPAAPYPMQYPPPYPAQPMGPPAYHETLAGGAAAPYPASQPPYNPAYMDAPKAAL
160 170 180 190 200
>>XP_005265262 (OMIM: 607290) PREDICTED: protein shisa-5 (209 aa)
initn: 1533 init1: 1533 opt: 1533 Z-score: 773.9 bits: 150.4 E(85289): 2.3e-36
Smith-Waterman score: 1533; 100.0% identity (100.0% similar) in 209 aa overlap (32-240:1-209)
10 20 30 40 50 60
pF1KB5 TAPVPAPRILLPLLLLLLLTPPPGARGEVCMASRGLSLFPESCPDFCCGTCDDQYCCSDV
::::::::::::::::::::::::::::::
XP_005 MASRGLSLFPESCPDFCCGTCDDQYCCSDV
10 20 30
70 80 90 100 110 120
pF1KB5 LKKFVWSEERCAVPEASVPASVEPVEQLGSALRFRPGYNDPMSGFGATLAVGLTIFVLSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LKKFVWSEERCAVPEASVPASVEPVEQLGSALRFRPGYNDPMSGFGATLAVGLTIFVLSV
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB5 VTIIICFTCSCCCLYKTCRRPRPVVTTTTSTTVVHAPYPQPPSVPPSYPGPSYQGYHTMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VTIIICFTCSCCCLYKTCRRPRPVVTTTTSTTVVHAPYPQPPSVPPSYPGPSYQGYHTMP
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB5 PQPGMPAAPYPMQYPPPYPAQPMGPPAYHETLAGGAAAPYPASQPPYNPAYMDAPKAAL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PQPGMPAAPYPMQYPPPYPAQPMGPPAYHETLAGGAAAPYPASQPPYNPAYMDAPKAAL
160 170 180 190 200
>>NP_001259011 (OMIM: 607290) protein shisa-5 isoform d (137 aa)
initn: 996 init1: 996 opt: 996 Z-score: 515.5 bits: 102.0 E(85289): 5.6e-22
Smith-Waterman score: 996; 100.0% identity (100.0% similar) in 136 aa overlap (105-240:2-137)
80 90 100 110 120 130
pF1KB5 PEASVPASVEPVEQLGSALRFRPGYNDPMSGFGATLAVGLTIFVLSVVTIIICFTCSCCC
::::::::::::::::::::::::::::::
NP_001 MGFGATLAVGLTIFVLSVVTIIICFTCSCCC
10 20 30
140 150 160 170 180 190
pF1KB5 LYKTCRRPRPVVTTTTSTTVVHAPYPQPPSVPPSYPGPSYQGYHTMPPQPGMPAAPYPMQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LYKTCRRPRPVVTTTTSTTVVHAPYPQPPSVPPSYPGPSYQGYHTMPPQPGMPAAPYPMQ
40 50 60 70 80 90
200 210 220 230 240
pF1KB5 YPPPYPAQPMGPPAYHETLAGGAAAPYPASQPPYNPAYMDAPKAAL
::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YPPPYPAQPMGPPAYHETLAGGAAAPYPASQPPYNPAYMDAPKAAL
100 110 120 130
>>NP_001259012 (OMIM: 607290) protein shisa-5 isoform e (118 aa)
initn: 819 init1: 819 opt: 819 Z-score: 430.4 bits: 86.0 E(85289): 3.1e-17
Smith-Waterman score: 819; 100.0% identity (100.0% similar) in 111 aa overlap (105-215:2-112)
80 90 100 110 120 130
pF1KB5 PEASVPASVEPVEQLGSALRFRPGYNDPMSGFGATLAVGLTIFVLSVVTIIICFTCSCCC
::::::::::::::::::::::::::::::
NP_001 MGFGATLAVGLTIFVLSVVTIIICFTCSCCC
10 20 30
140 150 160 170 180 190
pF1KB5 LYKTCRRPRPVVTTTTSTTVVHAPYPQPPSVPPSYPGPSYQGYHTMPPQPGMPAAPYPMQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LYKTCRRPRPVVTTTTSTTVVHAPYPQPPSVPPSYPGPSYQGYHTMPPQPGMPAAPYPMQ
40 50 60 70 80 90
200 210 220 230 240
pF1KB5 YPPPYPAQPMGPPAYHETLAGGAAAPYPASQPPYNPAYMDAPKAAL
:::::::::::::::::::::
NP_001 YPPPYPAQPMGPPAYHETLAGECPCQL
100 110
240 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 10:28:14 2016 done: Sat Nov 5 10:28:15 2016
Total Scan time: 7.180 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]