FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5839, 203 aa
  1>>>pF1KB5839 203 - 203 aa - 203 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1536+/-0.000739; mu= 14.1081+/- 0.045
 mean_var=61.1473+/-12.257, 0's: 0 Z-trim(108.0): 8  B-trim: 248 in 1/52
 Lambda= 0.164016
 statistics sampled from 9903 (9904) to 9903 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.304), width:  16
 Scan time:  2.070

The best scores are:                                      opt bits E(32554)
CCDS7514.1 DPCD gene_id:25911|Hs108|chr10          ( 203) 1356 328.9 1.3e-90


>>CCDS7514.1 DPCD gene_id:25911|Hs108|chr10               (203 aa)
 initn: 1356 init1: 1356 opt: 1356  Z-score: 1740.3  bits: 328.9 E(32554): 1.3e-90
Smith-Waterman score: 1356; 100.0% identity (100.0% similar) in 203 aa overlap (1-203:1-203)

               10        20        30        40        50        60
pF1KB5 MAVTGWLESLRTAQKTALLQDGRRKVHYLFPDGKEMAEEYDEKTSELLVRKWRVKSALGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MAVTGWLESLRTAQKTALLQDGRRKVHYLFPDGKEMAEEYDEKTSELLVRKWRVKSALGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 MGQWQLEVGDPAPLGAGNLGPELIKESNANPIFMRKDTKMSFQWRIRNLPYPKDVYSVSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MGQWQLEVGDPAPLGAGNLGPELIKESNANPIFMRKDTKMSFQWRIRNLPYPKDVYSVSV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 DQKERCIIVRTTNKKYYKKFSIPDLDRHQLPLDDALLSFAHANCTLIISYQKPKEVVVAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 DQKERCIIVRTTNKKYYKKFSIPDLDRHQLPLDDALLSFAHANCTLIISYQKPKEVVVAE
              130       140       150       160       170       180

              190       200   
pF1KB5 SELQKELKKVKTAHSNDGDCKTQ
       :::::::::::::::::::::::
CCDS75 SELQKELKKVKTAHSNDGDCKTQ
              190       200   




203 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 15:07:38 2016 done: Sat Nov  5 15:07:38 2016
 Total Scan time:  2.070 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]