FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5845, 139 aa
  1>>>pF1KB5845 139 - 139 aa - 139 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2106+/-0.000669; mu= 11.2754+/- 0.040
 mean_var=54.9751+/-10.781, 0's: 0 Z-trim(109.3): 14  B-trim: 24 in 2/49
 Lambda= 0.172978
 statistics sampled from 10803 (10805) to 10803 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.332), width:  16
 Scan time:  1.740

The best scores are:                                      opt bits E(32554)
CCDS32967.1 NR2C2AP gene_id:126382|Hs108|chr19     ( 139)  944 243.0 4.4e-65
CCDS74316.1 NR2C2AP gene_id:126382|Hs108|chr19     ( 167)  939 241.8 1.2e-64


>>CCDS32967.1 NR2C2AP gene_id:126382|Hs108|chr19          (139 aa)
 initn: 944 init1: 944 opt: 944  Z-score: 1281.9  bits: 243.0 E(32554): 4.4e-65
Smith-Waterman score: 944; 100.0% identity (100.0% similar) in 139 aa overlap (1-139:1-139)

               10        20        30        40        50        60
pF1KB5 MTHSLVCPETVSRVSSVLNRNTRQFGKKHLFDQDEETCWNSDQGPSQWVTLEFPQLIRVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MTHSLVCPETVSRVSSVLNRNTRQFGKKHLFDQDEETCWNSDQGPSQWVTLEFPQLIRVS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 QLQIQFQGGFSSRRGCLEGSQGTQALHKIVDFYPEDNNSLQTFPIPAAEVDRLKVTFEDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QLQIQFQGGFSSRRGCLEGSQGTQALHKIVDFYPEDNNSLQTFPIPAAEVDRLKVTFEDA
               70        80        90       100       110       120

              130         
pF1KB5 TDFFGRVVIYHLRVLGEKV
       :::::::::::::::::::
CCDS32 TDFFGRVVIYHLRVLGEKV
              130         

>>CCDS74316.1 NR2C2AP gene_id:126382|Hs108|chr19          (167 aa)
 initn: 939 init1: 939 opt: 939  Z-score: 1273.9  bits: 241.8 E(32554): 1.2e-64
Smith-Waterman score: 939; 100.0% identity (100.0% similar) in 138 aa overlap (1-138:1-138)

               10        20        30        40        50        60
pF1KB5 MTHSLVCPETVSRVSSVLNRNTRQFGKKHLFDQDEETCWNSDQGPSQWVTLEFPQLIRVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MTHSLVCPETVSRVSSVLNRNTRQFGKKHLFDQDEETCWNSDQGPSQWVTLEFPQLIRVS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 QLQIQFQGGFSSRRGCLEGSQGTQALHKIVDFYPEDNNSLQTFPIPAAEVDRLKVTFEDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 QLQIQFQGGFSSRRGCLEGSQGTQALHKIVDFYPEDNNSLQTFPIPAAEVDRLKVTFEDA
               70        80        90       100       110       120

              130                                     
pF1KB5 TDFFGRVVIYHLRVLGEKV                            
       ::::::::::::::::::                             
CCDS74 TDFFGRVVIYHLRVLGEKGTNRDPCRDLHYRAKLGEPRTHPRNLNFP
              130       140       150       160       




139 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 15:10:16 2016 done: Sat Nov  5 15:10:16 2016
 Total Scan time:  1.740 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]