FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5845, 139 aa
  1>>>pF1KB5845 139 - 139 aa - 139 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2458+/-0.000317; mu= 11.0467+/- 0.020
 mean_var=60.2363+/-11.422, 0's: 0 Z-trim(116.4): 5  B-trim: 0 in 0/51
 Lambda= 0.165251
 statistics sampled from 27553 (27556) to 27553 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.323), width:  16
 Scan time:  5.020

The best scores are:                                      opt bits E(85289)
NP_795361 (OMIM: 608719) nuclear receptor 2C2-asso ( 139)  944 233.0 1.2e-61
NP_001287874 (OMIM: 608719) nuclear receptor 2C2-a ( 167)  939 231.8 3.3e-61
XP_011525990 (OMIM: 608719) PREDICTED: nuclear rec ( 169)  925 228.5 3.4e-60


>>NP_795361 (OMIM: 608719) nuclear receptor 2C2-associat  (139 aa)
 initn: 944 init1: 944 opt: 944  Z-score: 1227.5  bits: 233.0 E(85289): 1.2e-61
Smith-Waterman score: 944; 100.0% identity (100.0% similar) in 139 aa overlap (1-139:1-139)

               10        20        30        40        50        60
pF1KB5 MTHSLVCPETVSRVSSVLNRNTRQFGKKHLFDQDEETCWNSDQGPSQWVTLEFPQLIRVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_795 MTHSLVCPETVSRVSSVLNRNTRQFGKKHLFDQDEETCWNSDQGPSQWVTLEFPQLIRVS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 QLQIQFQGGFSSRRGCLEGSQGTQALHKIVDFYPEDNNSLQTFPIPAAEVDRLKVTFEDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_795 QLQIQFQGGFSSRRGCLEGSQGTQALHKIVDFYPEDNNSLQTFPIPAAEVDRLKVTFEDA
               70        80        90       100       110       120

              130         
pF1KB5 TDFFGRVVIYHLRVLGEKV
       :::::::::::::::::::
NP_795 TDFFGRVVIYHLRVLGEKV
              130         

>>NP_001287874 (OMIM: 608719) nuclear receptor 2C2-assoc  (167 aa)
 initn: 939 init1: 939 opt: 939  Z-score: 1219.8  bits: 231.8 E(85289): 3.3e-61
Smith-Waterman score: 939; 100.0% identity (100.0% similar) in 138 aa overlap (1-138:1-138)

               10        20        30        40        50        60
pF1KB5 MTHSLVCPETVSRVSSVLNRNTRQFGKKHLFDQDEETCWNSDQGPSQWVTLEFPQLIRVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTHSLVCPETVSRVSSVLNRNTRQFGKKHLFDQDEETCWNSDQGPSQWVTLEFPQLIRVS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 QLQIQFQGGFSSRRGCLEGSQGTQALHKIVDFYPEDNNSLQTFPIPAAEVDRLKVTFEDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLQIQFQGGFSSRRGCLEGSQGTQALHKIVDFYPEDNNSLQTFPIPAAEVDRLKVTFEDA
               70        80        90       100       110       120

              130                                     
pF1KB5 TDFFGRVVIYHLRVLGEKV                            
       ::::::::::::::::::                             
NP_001 TDFFGRVVIYHLRVLGEKGTNRDPCRDLHYRAKLGEPRTHPRNLNFP
              130       140       150       160       

>>XP_011525990 (OMIM: 608719) PREDICTED: nuclear recepto  (169 aa)
 initn: 718 init1: 706 opt: 925  Z-score: 1201.7  bits: 228.5 E(85289): 3.4e-60
Smith-Waterman score: 925; 98.6% identity (98.6% similar) in 140 aa overlap (1-138:1-140)

               10        20        30        40        50        60
pF1KB5 MTHSLVCPETVSRVSSVLNRNTRQFGKKHLFDQDEETCWNSDQGPSQWVTLEFPQLIRVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MTHSLVCPETVSRVSSVLNRNTRQFGKKHLFDQDEETCWNSDQGPSQWVTLEFPQLIRVS
               10        20        30        40        50        60

               70        80        90       100         110        
pF1KB5 QLQIQFQGGFSSRRGCLEGSQGTQALHKIVDFYPEDNNSLQ--TFPIPAAEVDRLKVTFE
       :::::::::::::::::::::::::::::::::::::::::  :::::::::::::::::
XP_011 QLQIQFQGGFSSRRGCLEGSQGTQALHKIVDFYPEDNNSLQAHTFPIPAAEVDRLKVTFE
               70        80        90       100       110       120

      120       130                                     
pF1KB5 DATDFFGRVVIYHLRVLGEKV                            
       ::::::::::::::::::::                             
XP_011 DATDFFGRVVIYHLRVLGEKGTNRDPCRDLHYRAKLGEPRTHPRNLNFP
              130       140       150       160         




139 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 15:10:16 2016 done: Sat Nov  5 15:10:17 2016
 Total Scan time:  5.020 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]