FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5849, 246 aa
  1>>>pF1KB5849 246 - 246 aa - 246 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.8904+/-0.000722; mu= 1.4184+/- 0.044
 mean_var=232.5006+/-46.527, 0's: 0 Z-trim(117.5): 1  B-trim: 64 in 1/54
 Lambda= 0.084113
 statistics sampled from 18296 (18297) to 18296 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.839), E-opt: 0.2 (0.562), width:  16
 Scan time:  2.810

The best scores are:                                      opt bits E(32554)
CCDS62642.1 LIN37 gene_id:55957|Hs108|chr19        ( 246) 1709 218.8 2.6e-57


>>CCDS62642.1 LIN37 gene_id:55957|Hs108|chr19             (246 aa)
 initn: 1709 init1: 1709 opt: 1709  Z-score: 1142.3  bits: 218.8 E(32554): 2.6e-57
Smith-Waterman score: 1709; 100.0% identity (100.0% similar) in 246 aa overlap (1-246:1-246)

               10        20        30        40        50        60
pF1KB5 MFPVKVKVEKSELEMAKARNQLDAVLQCLLEKSHMDRERLDEEAGKTPSDTHNKDCSIAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MFPVKVKVEKSELEMAKARNQLDAVLQCLLEKSHMDRERLDEEAGKTPSDTHNKDCSIAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 TGKRPSARFPHQRRKKRREMDDGLAEGGPQRSNTYVIKLFDRSVDLAQFSENTPLYPICR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 TGKRPSARFPHQRRKKRREMDDGLAEGGPQRSNTYVIKLFDRSVDLAQFSENTPLYPICR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 AWMRNSPSVRERECSPSSPLPPLPEDEEGSEVTNSKSRDVYKLPPPTPPGPPGDACRSRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 AWMRNSPSVRERECSPSSPLPPLPEDEEGSEVTNSKSRDVYKLPPPTPPGPPGDACRSRI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 PSPLQPEMQGTPDDEPSEPEPSPSTLIYRNMQRWKRIRQRWKEASHRNQLRYSESMKILR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 PSPLQPEMQGTPDDEPSEPEPSPSTLIYRNMQRWKRIRQRWKEASHRNQLRYSESMKILR
              190       200       210       220       230       240

             
pF1KB5 EMYERQ
       ::::::
CCDS62 EMYERQ
             




246 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 15:20:25 2016 done: Sat Nov  5 15:20:26 2016
 Total Scan time:  2.810 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]