FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5856, 489 aa
  1>>>pF1KB5856 489 - 489 aa - 489 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5008+/-0.000913; mu= 12.3549+/- 0.055
 mean_var=91.3139+/-18.328, 0's: 0 Z-trim(106.6): 32  B-trim: 2 in 1/52
 Lambda= 0.134216
 statistics sampled from 9053 (9072) to 9053 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.647), E-opt: 0.2 (0.279), width:  16
 Scan time:  3.270

The best scores are:                                      opt bits E(32554)
CCDS5185.1 IFNGR1 gene_id:3459|Hs108|chr6          ( 489) 3234 636.6 1.8e-182


>>CCDS5185.1 IFNGR1 gene_id:3459|Hs108|chr6               (489 aa)
 initn: 3234 init1: 3234 opt: 3234  Z-score: 3389.2  bits: 636.6 E(32554): 1.8e-182
Smith-Waterman score: 3234; 100.0% identity (100.0% similar) in 489 aa overlap (1-489:1-489)

               10        20        30        40        50        60
pF1KB5 MALLFLLPLVMQGVSRAEMGTADLGPSSVPTPTNVTIESYNMNPIVYWEYQIMPQVPVFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 MALLFLLPLVMQGVSRAEMGTADLGPSSVPTPTNVTIESYNMNPIVYWEYQIMPQVPVFT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 VEVKNYGVKNSEWIDACINISHHYCNISDHVGDPSNSLWVRVKARVGQKESAYAKSEEFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 VEVKNYGVKNSEWIDACINISHHYCNISDHVGDPSNSLWVRVKARVGQKESAYAKSEEFA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 VCRDGKIGPPKLDIRKEEKQIMIDIFHPSVFVNGDEQEVDYDPETTCYIRVYNVYVRMNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 VCRDGKIGPPKLDIRKEEKQIMIDIFHPSVFVNGDEQEVDYDPETTCYIRVYNVYVRMNG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 SEIQYKILTQKEDDCDEIQCQLAIPVSSLNSQYCVSAEGVLHVWGVTTEKSKEVCITIFN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 SEIQYKILTQKEDDCDEIQCQLAIPVSSLNSQYCVSAEGVLHVWGVTTEKSKEVCITIFN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 SSIKGSLWIPVVAALLLFLVLSLVFICFYIKKINPLKEKSIILPKSLISVVRSATLETKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 SSIKGSLWIPVVAALLLFLVLSLVFICFYIKKINPLKEKSIILPKSLISVVRSATLETKP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 ESKYVSLITSYQPFSLEKEVVCEEPLSPATVPGMHTEDNPGKVEHTEELSSITEVVTTEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 ESKYVSLITSYQPFSLEKEVVCEEPLSPATVPGMHTEDNPGKVEHTEELSSITEVVTTEE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 NIPDVVPGSHLTPIERESSSPLSSNQSEPGSIALNSYHSRNCSESDHSRNGFDTDSSCLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 NIPDVVPGSHLTPIERESSSPLSSNQSEPGSIALNSYHSRNCSESDHSRNGFDTDSSCLE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 SHSSLSDSEFPPNNKGEIKTEGQELITVIKAPTSFGYDKPHVLVDLLVDDSGKESLIGYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 SHSSLSDSEFPPNNKGEIKTEGQELITVIKAPTSFGYDKPHVLVDLLVDDSGKESLIGYR
              430       440       450       460       470       480

                
pF1KB5 PTEDSKEFS
       :::::::::
CCDS51 PTEDSKEFS
                




489 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:08:45 2016 done: Sat Nov  5 18:08:45 2016
 Total Scan time:  3.270 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]