FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5865, 461 aa
  1>>>pF1KB5865 461 - 461 aa - 461 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1168+/- 0.001; mu= 14.3055+/- 0.059
 mean_var=88.1421+/-17.397, 0's: 0 Z-trim(106.9): 32  B-trim: 488 in 1/50
 Lambda= 0.136610
 statistics sampled from 9252 (9266) to 9252 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.65), E-opt: 0.2 (0.285), width:  16
 Scan time:  3.060

The best scores are:                                      opt bits E(32554)
CCDS4209.1 SIL1 gene_id:64374|Hs108|chr5           ( 461) 2944 590.4 1.3e-168


>>CCDS4209.1 SIL1 gene_id:64374|Hs108|chr5                (461 aa)
 initn: 2944 init1: 2944 opt: 2944  Z-score: 3140.4  bits: 590.4 E(32554): 1.3e-168
Smith-Waterman score: 2944; 100.0% identity (100.0% similar) in 461 aa overlap (1-461:1-461)

               10        20        30        40        50        60
pF1KB5 MAPQSLPSSRMAPLGMLLGLLMAACFTFCLSHQNLKEFALTNPEKSSTKETERKETKAEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MAPQSLPSSRMAPLGMLLGLLMAACFTFCLSHQNLKEFALTNPEKSSTKETERKETKAEE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 ELDAEVLEVFHPTHEWQALQPGQAVPAGSHVRLNLQTGEREAKLQYEDKFRNNLKGKRLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ELDAEVLEVFHPTHEWQALQPGQAVPAGSHVRLNLQTGEREAKLQYEDKFRNNLKGKRLD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 INTNTYTSQDLKSALAKFKEGAEMESSKEDKARQAEVKRLFRPIEELKKDFDELNVVIET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 INTNTYTSQDLKSALAKFKEGAEMESSKEDKARQAEVKRLFRPIEELKKDFDELNVVIET
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 DMQIMVRLINKFNSSSSSLEEKIAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DMQIMVRLINKFNSSSSSLEEKIAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 LVKEYAAFVLGAAFSSNPKVQVEAIEGGALQKLLVILATEQPLTAKKKVLFALCSLLRHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LVKEYAAFVLGAAFSSNPKVQVEAIEGGALQKLLVILATEQPLTAKKKVLFALCSLLRHF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 PYAQRQFLKLGGLQVLRTLVQEKGTEVLAVRVVTLLYDLVTEKMFAEEEAELTQEMSPEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PYAQRQFLKLGGLQVLRTLVQEKGTEVLAVRVVTLLYDLVTEKMFAEEEAELTQEMSPEK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 LQQYRQVHLLPGLWEQGWCEITAHLLALPEHDAREKVLQTLGVLLTTCRDRYRQDPQLGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LQQYRQVHLLPGLWEQGWCEITAHLLALPEHDAREKVLQTLGVLLTTCRDRYRQDPQLGR
              370       380       390       400       410       420

              430       440       450       460 
pF1KB5 TLASLQAEYQVLASLELQDGEDEGYFQELLGSVNSLLKELR
       :::::::::::::::::::::::::::::::::::::::::
CCDS42 TLASLQAEYQVLASLELQDGEDEGYFQELLGSVNSLLKELR
              430       440       450       460 




461 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 10:33:50 2016 done: Sat Nov  5 10:33:50 2016
 Total Scan time:  3.060 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]