FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5878, 495 aa
  1>>>pF1KB5878 495 - 495 aa - 495 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.7495+/-0.00154; mu= -11.8876+/- 0.092
 mean_var=627.5926+/-131.911, 0's: 0 Z-trim(109.0): 149  B-trim: 0 in 0/54
 Lambda= 0.051196
 statistics sampled from 10489 (10580) to 10489 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.62), E-opt: 0.2 (0.325), width:  16
 Scan time:  3.520

The best scores are:                                      opt bits E(32554)
CCDS10158.1 MNS1 gene_id:55329|Hs108|chr15         ( 495) 3125 246.2 6.1e-65


>>CCDS10158.1 MNS1 gene_id:55329|Hs108|chr15              (495 aa)
 initn: 3125 init1: 3125 opt: 3125  Z-score: 1279.3  bits: 246.2 E(32554): 6.1e-65
Smith-Waterman score: 3125; 99.8% identity (99.8% similar) in 495 aa overlap (1-495:1-495)

               10        20        30        40        50        60
pF1KB5 MGSKRRNLSCSERHQKLVDENYCKKLHVQALKNVNSQIRNQMVQNENDNRVQRKQFLRLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MGSKRRNLSCSERHQKLVDENYCKKLHVQALKNVNSQIRNQMVQNENDNRVQRKQFLRLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 QNEQFELDMEEAIQKAEENKRLKELQLKQEEKLAMELAKLKHESLKDEKMRQQVRENSIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QNEQFELDMEEAIQKAEENKRLKELQLKQEEKLAMELAKLKHESLKDEKMRQQVRENSIE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 LRELEKKLKAAYMNKERAAQIAEKDAIKYEQMKRDAEIAKTMMEEHKRIIKEENAAEDKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LRELEKKLKAAYMNKERAAQIAEKDAIKYEQMKRDAEIAKTMMEEHKRIIKEENAAEDKR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 NKAKAQYYLDLEKQLEEQEKKKQEAYEQLLKEKLMIDEIVRKIYEEDQLEKQQKLEKMNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NKAKAQYYLDLEKQLEEQEKKKQEAYEQLLKEKLMIDEIVRKIYEEDQLEKQQKLEKMNA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 MRRYIEEFQKEQALWRKKKREEMEEENRKIIEFANMQQQREEDRMAKVQENEEKRLQLQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MRRYIEEFQKEQALWRKKKREEMEEENRKIIEFANMQQQREEDRMAKVQENEEKRLQLQN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 ALTQKLEEMLRQREDLEQVRQELYQEEQAEIYKSKLKEEAEKKLRKQKEMKQDFEEQMAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ALTQKLEEMLRQREDLEQVRQELYQEEQAEIYKSKLKEEAEKKLRKQKEMKQDFEEQMAL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 KELVLQAAKEEEENFRKTMLAKFAEDDRIELMNAQKQRMKQLEHRRAVEKLIEERRQQFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KELVLQAAKEEEENFRKTMLAKFAEDDRIELMNAQKQRMKQLEHRRAVEKLIEERRQQFL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 ADKQRGLEEWQLQQRRQGFINAIIEEERLKLLKEHATNLLGYLPKGVFKKEDDIDLLGEE
       ::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ADKQRELEEWQLQQRRQGFINAIIEEERLKLLKEHATNLLGYLPKGVFKKEDDIDLLGEE
              430       440       450       460       470       480

              490     
pF1KB5 FRKVYQQRSEICEEK
       :::::::::::::::
CCDS10 FRKVYQQRSEICEEK
              490     




495 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 08:21:00 2016 done: Sat Nov  5 08:21:01 2016
 Total Scan time:  3.520 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]