Result of FASTA (ccds) for
pF1KB5901
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5901, 500 aa
1>>>pF1KB5901 500 - 500 aa - 500 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0084+/-0.000703; mu= 15.3771+/- 0.043
mean_var=78.8997+/-15.530, 0's: 0 Z-trim(111.0): 7 B-trim: 0 in 0/50
Lambda= 0.144390
statistics sampled from 12001 (12008) to 12001 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.726), E-opt: 0.2 (0.369), width: 16
Scan time: 3.190
The best scores are: opt bits E(32554)
CCDS3437.1 RBPJ gene_id:3516|Hs108|chr4 ( 500) 3389 715.2 4.2e-206
CCDS43219.1 RBPJ gene_id:3516|Hs108|chr4 ( 487) 3248 685.8 2.8e-197
CCDS3436.1 RBPJ gene_id:3516|Hs108|chr4 ( 485) 3240 684.1 8.9e-197
CCDS33969.1 RBPJ gene_id:3516|Hs108|chr4 ( 486) 3240 684.1 8.9e-197
CCDS63283.1 RBPJL gene_id:11317|Hs108|chr20 ( 516) 1634 349.6 4.8e-96
CCDS63284.1 RBPJL gene_id:11317|Hs108|chr20 ( 471) 1425 306.1 5.7e-83
CCDS13349.1 RBPJL gene_id:11317|Hs108|chr20 ( 517) 1381 296.9 3.5e-80
>>CCDS3437.1 RBPJ gene_id:3516|Hs108|chr4 (500 aa)
initn: 3389 init1: 3389 opt: 3389 Z-score: 3813.8 bits: 715.2 E(32554): 4.2e-206
Smith-Waterman score: 3389; 100.0% identity (100.0% similar) in 500 aa overlap (1-500:1-500)
10 20 30 40 50 60
pF1KB5 MDHTEGSPAEEPPAHAPSPGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MDHTEGSPAEEPPAHAPSPGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 QLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 PVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGS
430 440 450 460 470 480
490 500
pF1KB5 YTNASTNSTSVTSSTATVVS
::::::::::::::::::::
CCDS34 YTNASTNSTSVTSSTATVVS
490 500
>>CCDS43219.1 RBPJ gene_id:3516|Hs108|chr4 (487 aa)
initn: 3248 init1: 3248 opt: 3248 Z-score: 3655.2 bits: 685.8 E(32554): 2.8e-197
Smith-Waterman score: 3248; 100.0% identity (100.0% similar) in 481 aa overlap (20-500:7-487)
10 20 30 40 50 60
pF1KB5 MDHTEGSPAEEPPAHAPSPGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY
:::::::::::::::::::::::::::::::::::::::::
CCDS43 MAPVVTGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY
10 20 30 40
70 80 90 100 110 120
pF1KB5 GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB5 NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB5 IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDG
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB5 YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB5 SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESL
290 300 310 320 330 340
370 380 390 400 410 420
pF1KB5 QLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQ
350 360 370 380 390 400
430 440 450 460 470 480
pF1KB5 PVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGS
410 420 430 440 450 460
490 500
pF1KB5 YTNASTNSTSVTSSTATVVS
::::::::::::::::::::
CCDS43 YTNASTNSTSVTSSTATVVS
470 480
>>CCDS3436.1 RBPJ gene_id:3516|Hs108|chr4 (485 aa)
initn: 3240 init1: 3240 opt: 3240 Z-score: 3646.2 bits: 684.1 E(32554): 8.9e-197
Smith-Waterman score: 3240; 100.0% identity (100.0% similar) in 480 aa overlap (21-500:6-485)
10 20 30 40 50 60
pF1KB5 MDHTEGSPAEEPPAHAPSPGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY
::::::::::::::::::::::::::::::::::::::::
CCDS34 MGGCRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY
10 20 30 40
70 80 90 100 110 120
pF1KB5 GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB5 NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB5 IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDG
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB5 YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB5 SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESL
290 300 310 320 330 340
370 380 390 400 410 420
pF1KB5 QLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQ
350 360 370 380 390 400
430 440 450 460 470 480
pF1KB5 PVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGS
410 420 430 440 450 460
490 500
pF1KB5 YTNASTNSTSVTSSTATVVS
::::::::::::::::::::
CCDS34 YTNASTNSTSVTSSTATVVS
470 480
>>CCDS33969.1 RBPJ gene_id:3516|Hs108|chr4 (486 aa)
initn: 3240 init1: 3240 opt: 3240 Z-score: 3646.2 bits: 684.1 E(32554): 8.9e-197
Smith-Waterman score: 3240; 100.0% identity (100.0% similar) in 480 aa overlap (21-500:7-486)
10 20 30 40 50 60
pF1KB5 MDHTEGSPAEEPPAHAPSPGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY
::::::::::::::::::::::::::::::::::::::::
CCDS33 MAWIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY
10 20 30 40
70 80 90 100 110 120
pF1KB5 GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB5 NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB5 IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDG
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB5 YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB5 SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESL
290 300 310 320 330 340
370 380 390 400 410 420
pF1KB5 QLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQ
350 360 370 380 390 400
430 440 450 460 470 480
pF1KB5 PVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGS
410 420 430 440 450 460
490 500
pF1KB5 YTNASTNSTSVTSSTATVVS
::::::::::::::::::::
CCDS33 YTNASTNSTSVTSSTATVVS
470 480
>>CCDS63283.1 RBPJL gene_id:11317|Hs108|chr20 (516 aa)
initn: 1338 init1: 460 opt: 1634 Z-score: 1837.8 bits: 349.6 E(32554): 4.8e-96
Smith-Waterman score: 1634; 54.4% identity (77.6% similar) in 447 aa overlap (19-452:39-482)
10 20 30 40
pF1KB5 MDHTEGSPAEEPPAHAPSPGKFGERPPPKRLT--REAMRNYLKERGDQ
:: . : :.. : : ..: :... .:
CCDS63 PSVPPNPLTHLSLQDRSEMQLQSEADRRSLPGTW-TRSSPEHTTILRGGVRRCLQQQCEQ
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB5 TVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIG
:: :::::::::::::::::::::::::: : ::. : : . .: :...:.
CCDS63 TVRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAHQAGETGPTVCGYMGLD
70 80 90 100 110 120
110 120 130 140 150
pF1KB5 N---SDQEMQQLNLE----GKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSK
. : : :.::.: .... ::::::::.:::::: : ... .. ..:.: :.
CCDS63 SASGSATETQKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGRELGTFHSR
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB5 RIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGA
::::::::.:::::::.::::.::.::.::::::::::::::: :: : : ::..::.:
CCDS63 LIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSVEDGAFVASARQWAA
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB5 FFIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDP
: .:: : ..:. : :.::..::. :.:::.:::..:: .::::: :: ::::.:.:
CCDS63 FTLHLADGHSAQGD-FPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCALLDVDEP
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB5 VSQLHKCAFYLKDTER----MYLCLSQERIIQFQATPCPKEPNKEMINDGASWTIISTDK
.:::::::: . . ::::. :...::::.::::: :. ..::.. ::::.:..
CCDS63 ISQLHKCAFQFPGSPPGGGGTYLCLATEKVVQFQASPCPKEANRALLNDSSCWTIIGTES
310 320 330 340 350 360
340 350 360 370 380 390
pF1KB5 AEYTFYEGMGPVLAPVTPVPVVESLQLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMY
.:..: ... .: ::::::.. .:.:.:::::: ::: :.:: .:.::::::::::::
CCDS63 VEFSFSTSLACTLEPVTPVPLISTLELSGGGDVATLELHGENFHAGLKVWFGDVEAETMY
370 380 390 400 410 420
400 410 420 430 440 450
pF1KB5 RCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCS
.:..:::::..:: :::.: :. .:..::: ::..: ....:::::: . ::
CCDS63 S-PRSLVCVVPDVAAFCSDWRWLRAPITIPMSLVRADGLFYPSAFSFTYTPEYSVRPGHP
430 440 450 460 470 480
460 470 480 490 500
pF1KB5 AAGAILRANSSQVPPNESNTNSEGSYTNASTNSTSVTSSTATVVS
CCDS63 GVPEPATDADALLESIHQEFTRTNFHLFIQT
490 500 510
>>CCDS63284.1 RBPJL gene_id:11317|Hs108|chr20 (471 aa)
initn: 1128 init1: 460 opt: 1425 Z-score: 1603.1 bits: 306.1 E(32554): 5.7e-83
Smith-Waterman score: 1425; 55.2% identity (77.4% similar) in 393 aa overlap (19-398:39-429)
10 20 30 40
pF1KB5 MDHTEGSPAEEPPAHAPSPGKFGERPPPKRLT--REAMRNYLKERGDQ
:: . : :.. : : ..: :... .:
CCDS63 PSVPPNPLTHLSLQDRSEMQLQSEADRRSLPGTW-TRSSPEHTTILRGGVRRCLQQQCEQ
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB5 TVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIG
:: :::::::::::::::::::::::::: : ::. : : . .: :...:.
CCDS63 TVRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAHQAGETGPTVCGYMGLD
70 80 90 100 110 120
110 120 130 140 150
pF1KB5 N---SDQEMQQLNLE----GKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSK
. : : :.::.: .... ::::::::.:::::: : ... .. ..:.: :.
CCDS63 SASGSATETQKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGRELGTFHSR
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB5 RIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGA
::::::::.:::::::.::::.::.::.::::::::::::::: :: : : ::..::.:
CCDS63 LIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSVEDGAFVASARQWAA
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB5 FFIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDP
: .:: : ..:. : :.::..::. :.:::.:::..:: .::::: :: ::::.:.:
CCDS63 FTLHLADGHSAQGD-FPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCALLDVDEP
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB5 VSQLHKCAFYLKDTER----MYLCLSQERIIQFQATPCPKEPNKEMINDGASWTIISTDK
.:::::::: . . ::::. :...::::.::::: :. ..::.. ::::.:..
CCDS63 ISQLHKCAFQFPGSPPGGGGTYLCLATEKVVQFQASPCPKEANRALLNDSSCWTIIGTES
310 320 330 340 350 360
340 350 360 370 380 390
pF1KB5 AEYTFYEGMGPVLAPVTPVPVVESLQLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMY
.:..: ... .: ::::::.. .:.:.:::::: ::: :.:: .:.::::::::::::
CCDS63 VEFSFSTSLACTLEPVTPVPLISTLELSGGGDVATLELHGENFHAGLKVWFGDVEAETMY
370 380 390 400 410 420
400 410 420 430 440 450
pF1KB5 RCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCS
: :
CCDS63 RYGVEPAVPGVRGAGRGGLLQRLALAARSHHNPHEPGARRRALLP
430 440 450 460 470
>>CCDS13349.1 RBPJL gene_id:11317|Hs108|chr20 (517 aa)
initn: 1356 init1: 682 opt: 1381 Z-score: 1552.9 bits: 296.9 E(32554): 3.5e-80
Smith-Waterman score: 1653; 54.6% identity (77.9% similar) in 447 aa overlap (19-452:39-483)
10 20 30 40
pF1KB5 MDHTEGSPAEEPPAHAPSPGKFGERPPPKRLT--REAMRNYLKERGDQ
:: . : :.. : : ..: :... .:
CCDS13 PSVPPNPLTHLSLQDRSEMQLQSEADRRSLPGTW-TRSSPEHTTILRGGVRRCLQQQCEQ
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB5 TVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIG
:: :::::::::::::::::::::::::: : ::. : : . .: :...:.
CCDS13 TVRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAHQAGETGPTVCGYMGLD
70 80 90 100 110 120
110 120 130 140 150
pF1KB5 N---SDQEMQQLNLE----GKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSK
. : : :.::.: .... ::::::::.:::::: : ... .. ..:.: :.
CCDS13 SASGSATETQKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGRELGTFHSR
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB5 RIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGA
::::::::.:::::::.::::.::.::.::::::::::::::: :: : : ::..::.:
CCDS13 LIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSVEDGAFVASARQWAA
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB5 FFIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDP
: .:: : ..:. : :.::..::. :.:::.:::..:: .::::: :: ::::.:.:
CCDS13 FTLHLADGHSAQGD-FPPREGYVRYGSLVQLVCTVTGITLPPMIIRKVAKQCALLDVDEP
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB5 VSQLHKCAFYLKDTER----MYLCLSQERIIQFQATPCPKEPNKEMINDGASWTIISTDK
.:::::::: . . ::::. :...::::.::::: :. ..::.. ::::.:..
CCDS13 ISQLHKCAFQFPGSPPGGGGTYLCLATEKVVQFQASPCPKEANRALLNDSSCWTIIGTES
310 320 330 340 350 360
340 350 360 370 380 390
pF1KB5 AEYTFYEGMGPVLAPVTPVPVVESLQLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMY
.:..: ... .: ::::::.. .:.:.:::::: ::: :.:: .:.::::::::::::
CCDS13 VEFSFSTSLACTLEPVTPVPLISTLELSGGGDVATLELHGENFHAGLKVWFGDVEAETMY
370 380 390 400 410 420
400 410 420 430 440 450
pF1KB5 RCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCS
: .:..:::::..:: :::.: :. .:..::: ::..: ....:::::: . ::
CCDS13 RSPRSLVCVVPDVAAFCSDWRWLRAPITIPMSLVRADGLFYPSAFSFTYTPEYSVRPGHP
430 440 450 460 470 480
460 470 480 490 500
pF1KB5 AAGAILRANSSQVPPNESNTNSEGSYTNASTNSTSVTSSTATVVS
CCDS13 GVPEPATDADALLESIHQEFTRTNFHLFIQT
490 500 510
500 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 15:29:17 2016 done: Sat Nov 5 15:29:17 2016
Total Scan time: 3.190 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]