Result of FASTA (omim) for
pF1KB5909
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5909, 504 aa
1>>>pF1KB5909 504 - 504 aa - 504 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3243+/-0.000445; mu= 14.5015+/- 0.028
mean_var=173.4687+/-36.973, 0's: 0 Z-trim(114.6): 429 B-trim: 652 in 1/55
Lambda= 0.097379
statistics sampled from 23954 (24539) to 23954 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.288), width: 16
Scan time: 8.490
The best scores are: opt bits E(85289)
NP_055317 (OMIM: 608330) pre-mRNA-processing facto ( 504) 3297 476.2 9.6e-134
NP_001309196 (OMIM: 607795,615922) U4/U6 small nuc ( 279) 405 69.6 1.4e-11
NP_001309195 (OMIM: 607795,615922) U4/U6 small nuc ( 279) 405 69.6 1.4e-11
NP_001231855 (OMIM: 607795,615922) U4/U6 small nuc ( 521) 405 69.9 2e-11
NP_004688 (OMIM: 607795,615922) U4/U6 small nuclea ( 522) 405 69.9 2e-11
NP_008882 (OMIM: 601787) transcription initiation ( 800) 397 69.0 5.6e-11
NP_758440 (OMIM: 614784,615973) POC1 centriolar pr ( 478) 382 66.7 1.8e-10
NP_001186706 (OMIM: 614784,615973) POC1 centriolar ( 436) 368 64.6 6.5e-10
NP_060058 (OMIM: 609012) WD repeat-containing prot ( 334) 353 62.4 2.4e-09
XP_005272220 (OMIM: 609012) PREDICTED: WD repeat-c ( 334) 353 62.4 2.4e-09
NP_438172 (OMIM: 609012) WD repeat-containing prot ( 334) 353 62.4 2.4e-09
XP_016860391 (OMIM: 612173) PREDICTED: sperm-assoc ( 323) 341 60.7 7.5e-09
XP_011510137 (OMIM: 612173) PREDICTED: sperm-assoc ( 323) 341 60.7 7.5e-09
XP_016860389 (OMIM: 612173) PREDICTED: sperm-assoc ( 323) 341 60.7 7.5e-09
XP_016860390 (OMIM: 612173) PREDICTED: sperm-assoc ( 323) 341 60.7 7.5e-09
XP_016860387 (OMIM: 612173) PREDICTED: sperm-assoc ( 390) 341 60.8 8.5e-09
XP_011531865 (OMIM: 614783,614813) PREDICTED: POC1 ( 246) 338 60.1 8.5e-09
XP_011531867 (OMIM: 614783,614813) PREDICTED: POC1 ( 246) 338 60.1 8.5e-09
XP_011531866 (OMIM: 614783,614813) PREDICTED: POC1 ( 246) 338 60.1 8.5e-09
XP_016860385 (OMIM: 612173) PREDICTED: sperm-assoc ( 512) 341 60.9 1e-08
XP_016860386 (OMIM: 612173) PREDICTED: sperm-assoc ( 512) 341 60.9 1e-08
XP_011510125 (OMIM: 612173) PREDICTED: sperm-assoc ( 528) 341 61.0 1e-08
XP_011510124 (OMIM: 612173) PREDICTED: sperm-assoc ( 528) 341 61.0 1e-08
XP_011510123 (OMIM: 612173) PREDICTED: sperm-assoc ( 537) 341 61.0 1e-08
XP_011510121 (OMIM: 612173) PREDICTED: sperm-assoc ( 577) 341 61.0 1.1e-08
XP_011510116 (OMIM: 612173) PREDICTED: sperm-assoc ( 600) 341 61.0 1.1e-08
NP_078808 (OMIM: 612173) sperm-associated antigen ( 631) 341 61.0 1.1e-08
NP_005877 (OMIM: 602703,616212) katanin p80 WD40 r ( 655) 332 59.8 2.8e-08
XP_016878353 (OMIM: 602703,616212) PREDICTED: kata ( 655) 332 59.8 2.8e-08
XP_016878352 (OMIM: 602703,616212) PREDICTED: kata ( 655) 332 59.8 2.8e-08
XP_006721186 (OMIM: 602703,616212) PREDICTED: kata ( 658) 332 59.8 2.8e-08
XP_016878351 (OMIM: 602703,616212) PREDICTED: kata ( 672) 332 59.8 2.8e-08
XP_005255829 (OMIM: 602703,616212) PREDICTED: kata ( 672) 332 59.8 2.8e-08
XP_016878350 (OMIM: 602703,616212) PREDICTED: kata ( 672) 332 59.8 2.8e-08
XP_016878349 (OMIM: 602703,616212) PREDICTED: kata ( 675) 332 59.8 2.8e-08
XP_011521112 (OMIM: 602703,616212) PREDICTED: kata ( 675) 332 59.8 2.8e-08
XP_006721184 (OMIM: 602703,616212) PREDICTED: kata ( 675) 332 59.8 2.8e-08
XP_006721185 (OMIM: 602703,616212) PREDICTED: kata ( 675) 332 59.8 2.8e-08
XP_011530390 (OMIM: 606278) PREDICTED: F-box/WD re ( 540) 324 58.6 5.4e-08
NP_001013433 (OMIM: 606278) F-box/WD repeat-contai ( 589) 324 58.6 5.7e-08
NP_060785 (OMIM: 606278) F-box/WD repeat-containin ( 627) 324 58.7 5.9e-08
XP_011530389 (OMIM: 606278) PREDICTED: F-box/WD re ( 679) 324 58.7 6.2e-08
XP_011530388 (OMIM: 606278) PREDICTED: F-box/WD re ( 679) 324 58.7 6.2e-08
XP_016863851 (OMIM: 606278) PREDICTED: F-box/WD re ( 707) 324 58.7 6.4e-08
NP_361014 (OMIM: 606278) F-box/WD repeat-containin ( 707) 324 58.7 6.4e-08
XP_011530387 (OMIM: 606278) PREDICTED: F-box/WD re ( 707) 324 58.7 6.4e-08
XP_011530385 (OMIM: 606278) PREDICTED: F-box/WD re ( 707) 324 58.7 6.4e-08
XP_011530386 (OMIM: 606278) PREDICTED: F-box/WD re ( 707) 324 58.7 6.4e-08
NP_001269467 (OMIM: 139380,613065,616973) guanine ( 240) 307 55.7 1.7e-07
NP_001269468 (OMIM: 139380,613065,616973) guanine ( 340) 307 55.9 2.1e-07
>>NP_055317 (OMIM: 608330) pre-mRNA-processing factor 19 (504 aa)
initn: 3297 init1: 3297 opt: 3297 Z-score: 2522.1 bits: 476.2 E(85289): 9.6e-134
Smith-Waterman score: 3297; 100.0% identity (100.0% similar) in 504 aa overlap (1-504:1-504)
10 20 30 40 50 60
pF1KB5 MSLICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDIKVAHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MSLICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDIKVAHP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 IRPKPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 IRPKPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 TKEVTAAREALATLKPQAGLIVPQAVPSSQPSVVGAGEPMDLGELVGMTPEIIQKLQDKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TKEVTAAREALATLKPQAGLIVPQAVPSSQPSVVGAGEPMDLGELVGMTPEIIQKLQDKA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 TVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 GADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVFSASPDATIRIWSVPNASCVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVFSASPDATIRIWSVPNASCVQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 VVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDETSGCSLTCAQFHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 VVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDETSGCSLTCAQFHP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 DGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 DGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWD
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 LRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEILHFTEHSGLTTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEILHFTEHSGLTTG
430 440 450 460 470 480
490 500
pF1KB5 VAFGHHAKFIASTGMDRSLKFYSL
::::::::::::::::::::::::
NP_055 VAFGHHAKFIASTGMDRSLKFYSL
490 500
>>NP_001309196 (OMIM: 607795,615922) U4/U6 small nuclear (279 aa)
initn: 410 init1: 204 opt: 405 Z-score: 329.2 bits: 69.6 E(85289): 1.4e-11
Smith-Waterman score: 405; 27.1% identity (60.5% similar) in 258 aa overlap (256-502:22-276)
230 240 250 260 270 280
pF1KB5 ALDLCPSDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVF-----
.: ::.::. .: ..::::.. . .
NP_001 MLSFVFDRSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDPKDV
10 20 30 40 50
290 300 310 320 330
pF1KB5 ---SASPDATIRIWSVPNASCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQT
: . :.....::. . : ...: :. . : .: .: .. :. : . :...
NP_001 NLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEA
60 70 80 90 100 110
340 350 360 370 380 390
pF1KB5 GRVLTKVTDETSGCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITS
. . . .. : . :: :: . ::: .:. ..:::. . . :: : .
NP_001 QEEILHQEGHSMG--VYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYG
120 130 140 150 160
400 410 420 430 440 450
pF1KB5 IAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQ-SGTYLALGGTD
: :: :::..::.. :.. :.::::. . :. .:. : .. :. :..: :. :
NP_001 INFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNL-VTGVKFEPIHGNFLLTGAYD
170 180 190 200 210 220
460 470 480 490 500
pF1KB5 --VQIYICKQWTEILHFTEHSGLTTGVAFGHHAKFIASTGMDRSLKFYSL
..:. :. . .. : : . :. .. ...::. ..::..:..
NP_001 NTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMAE
230 240 250 260 270
>>NP_001309195 (OMIM: 607795,615922) U4/U6 small nuclear (279 aa)
initn: 410 init1: 204 opt: 405 Z-score: 329.2 bits: 69.6 E(85289): 1.4e-11
Smith-Waterman score: 405; 27.1% identity (60.5% similar) in 258 aa overlap (256-502:22-276)
230 240 250 260 270 280
pF1KB5 ALDLCPSDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVF-----
.: ::.::. .: ..::::.. . .
NP_001 MLSFVFDRSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDPKDV
10 20 30 40 50
290 300 310 320 330
pF1KB5 ---SASPDATIRIWSVPNASCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQT
: . :.....::. . : ...: :. . : .: .: .. :. : . :...
NP_001 NLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEA
60 70 80 90 100 110
340 350 360 370 380 390
pF1KB5 GRVLTKVTDETSGCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITS
. . . .. : . :: :: . ::: .:. ..:::. . . :: : .
NP_001 QEEILHQEGHSMG--VYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYG
120 130 140 150 160
400 410 420 430 440 450
pF1KB5 IAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQ-SGTYLALGGTD
: :: :::..::.. :.. :.::::. . :. .:. : .. :. :..: :. :
NP_001 INFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNL-VTGVKFEPIHGNFLLTGAYD
170 180 190 200 210 220
460 470 480 490 500
pF1KB5 --VQIYICKQWTEILHFTEHSGLTTGVAFGHHAKFIASTGMDRSLKFYSL
..:. :. . .. : : . :. .. ...::. ..::..:..
NP_001 NTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMAE
230 240 250 260 270
>>NP_001231855 (OMIM: 607795,615922) U4/U6 small nuclear (521 aa)
initn: 410 init1: 204 opt: 405 Z-score: 326.2 bits: 69.9 E(85289): 2e-11
Smith-Waterman score: 405; 27.1% identity (60.5% similar) in 258 aa overlap (256-502:264-518)
230 240 250 260 270 280
pF1KB5 ALDLCPSDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVF-----
.: ::.::. .: ..::::.. . .
NP_001 SYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDPKDV
240 250 260 270 280 290
290 300 310 320 330
pF1KB5 ---SASPDATIRIWSVPNASCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQT
: . :.....::. . : ...: :. . : .: .: .. :. : . :...
NP_001 NLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEA
300 310 320 330 340 350
340 350 360 370 380 390
pF1KB5 GRVLTKVTDETSGCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITS
. . . .. : . :: :: . ::: .:. ..:::. . . :: : .
NP_001 QEEILHQEGHSMG--VYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYG
360 370 380 390 400 410
400 410 420 430 440 450
pF1KB5 IAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQ-SGTYLALGGTD
: :: :::..::.. :.. :.::::. . :. .:. : .. :. :..: :. :
NP_001 INFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNL-VTGVKFEPIHGNFLLTGAYD
420 430 440 450 460 470
460 470 480 490 500
pF1KB5 --VQIYICKQWTEILHFTEHSGLTTGVAFGHHAKFIASTGMDRSLKFYSL
..:. :. . .. : : . :. .. ...::. ..::..:..
NP_001 NTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMAE
480 490 500 510 520
>>NP_004688 (OMIM: 607795,615922) U4/U6 small nuclear ri (522 aa)
initn: 410 init1: 204 opt: 405 Z-score: 326.2 bits: 69.9 E(85289): 2e-11
Smith-Waterman score: 405; 27.1% identity (60.5% similar) in 258 aa overlap (256-502:265-519)
230 240 250 260 270 280
pF1KB5 ALDLCPSDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVF-----
.: ::.::. .: ..::::.. . .
NP_004 SYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDPKDV
240 250 260 270 280 290
290 300 310 320 330
pF1KB5 ---SASPDATIRIWSVPNASCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQT
: . :.....::. . : ...: :. . : .: .: .. :. : . :...
NP_004 NLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEA
300 310 320 330 340 350
340 350 360 370 380 390
pF1KB5 GRVLTKVTDETSGCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITS
. . . .. : . :: :: . ::: .:. ..:::. . . :: : .
NP_004 QEEILHQEGHSMG--VYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYG
360 370 380 390 400 410
400 410 420 430 440 450
pF1KB5 IAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQ-SGTYLALGGTD
: :: :::..::.. :.. :.::::. . :. .:. : .. :. :..: :. :
NP_004 INFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNL-VTGVKFEPIHGNFLLTGAYD
420 430 440 450 460 470
460 470 480 490 500
pF1KB5 --VQIYICKQWTEILHFTEHSGLTTGVAFGHHAKFIASTGMDRSLKFYSL
..:. :. . .. : : . :. .. ...::. ..::..:..
NP_004 NTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMAE
480 490 500 510 520
>>NP_008882 (OMIM: 601787) transcription initiation fact (800 aa)
initn: 380 init1: 225 opt: 397 Z-score: 318.0 bits: 69.0 E(85289): 5.6e-11
Smith-Waterman score: 397; 30.2% identity (59.9% similar) in 242 aa overlap (248-485:527-758)
220 230 240 250 260 270
pF1KB5 SASIPGILALDLCPSDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQD
..:... . : : ::. : .. : :...
NP_008 WSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRN
500 510 520 530 540 550
280 290 300 310 320 330
pF1KB5 LVFSASPDATIRIWSVPNASCVQVVRAHESAVTGLSLHATGDYLLSSSDDQY---WAFSD
..:.: :.:.:.::. . .:. ..:. : .. : :..:.. :. :: .
NP_008 YLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDH
560 570 580 590 600 610
340 350 360 370 380 390
pF1KB5 IQTGRVLT-KVTDETSGCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSG
: :... ...: ..:..:::.. .::. : ...::. . . : : ::.:
NP_008 YQPLRIFAGHLAD------VNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKG
620 630 640 650 660 670
400 410 420 430 440 450
pF1KB5 PITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALG
:: :..:: :: .:::.: :. : :::. . :. .. : :: :...: :: :
NP_008 PIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTD-TVCSLRFSRDGEILASG
680 690 700 710 720
460 470 480 490 500
pF1KB5 GTDVQIYICKQWTEILHFTEHSGLTTGVAFGHHAKFIASTGMDRSLKFYSL
. : . . : : : . .: ::
NP_008 SMDNTV---RLWDAIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFT
730 740 750 760 770 780
NP_008 RRNLVLAAGAYSPQ
790 800
>>NP_758440 (OMIM: 614784,615973) POC1 centriolar protei (478 aa)
initn: 322 init1: 186 opt: 382 Z-score: 309.1 bits: 66.7 E(85289): 1.8e-10
Smith-Waterman score: 382; 29.3% identity (59.1% similar) in 276 aa overlap (224-496:21-291)
200 210 220 230 240 250
pF1KB5 VPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTGGADKNVVVFDKSS
: .::: :. ... :.. : ..... .
NP_758 MASATEDPVLERYFKGHKAAITSLDLSPNG-KQLATASWDTFLMLWNFKP
10 20 30 40
260 270 280 290 300 310
pF1KB5 EQILATLKGHTKKVTSVVFHPSQDLVFSASPDATIRIWSVPNA-SCVQVVRAHESAVTGL
. :: :::: : : .:. ::: : :.:.: .:. . . .:: . : ..
NP_758 HARAYRYVGHKDVVTSVQFSPHGNLLASASRDRTVRLW-IPDKRGKFSEFKAHTAPVRSV
50 60 70 80 90 100
320 330 340 350 360 370
pF1KB5 SLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDETSGCSLTCAQFHPDGLIFGTGTMDS
.. : :..: ..:.:. .. : : .. .: . ::.: ::: .. . . :.
NP_758 DFSADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHW--VRCAKFSPDGRLIVSCSEDK
110 120 130 140 150 160
380 390 400 410 420 430
pF1KB5 QIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQL
::::: .. : :: : . . :. .: .:.:..:..::.::.: : .. :.
NP_758 TIKIWDTTNKQCVNNFSDSVGFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQV
170 180 190 200 210 220
440 450 460 470 480 490
pF1KB5 DNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEILHFTE--HSGLTTGVAFGHHAKFI
.. :. . : ::.:: ...: . : : .: :.: . :.:.. ....
NP_758 HSG-GVNCISFHPSGNYLITASSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGELF
230 240 250 260 270 280
500
pF1KB5 ASTGMDRSLKFYSL
:: : :
NP_758 ASGGADTQVLLWRTNFDELHCKGLTKRNLKRLHFDSPPHLLDIYPRTPHPHEEKVETVEI
290 300 310 320 330 340
>>NP_001186706 (OMIM: 614784,615973) POC1 centriolar pro (436 aa)
initn: 322 init1: 186 opt: 368 Z-score: 298.9 bits: 64.6 E(85289): 6.5e-10
Smith-Waterman score: 368; 31.1% identity (59.7% similar) in 238 aa overlap (262-496:16-249)
240 250 260 270 280 290
pF1KB5 SDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVFSASPDATIRIW
:: :::: : : .:. ::: : :.:.:
NP_001 MLWNFKPHARAYRYVGHKDVVTSVQFSPHGNLLASASRDRTVRLW
10 20 30 40
300 310 320 330 340 350
pF1KB5 SVPNA-SCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDETSG
.:. . . .:: . : .... : :..: ..:.:. .. : : .. .:
NP_001 -IPDKRGKFSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHW
50 60 70 80 90 100
360 370 380 390 400 410
pF1KB5 CSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATA
. ::.: ::: .. . . :. ::::: .. : :: : . . :. .: .:.:
NP_001 --VRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPSGTCIASA
110 120 130 140 150 160
420 430 440 450 460 470
pF1KB5 ADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEILH
..:..::.::.: : .. :. .. :. . : ::.:: ...: . : :
NP_001 GSDQTVKVWDVRVNKLLQHYQVHSG-GVNCISFHPSGNYLITASSDGTLKILDLLEGRLI
170 180 190 200 210 220
480 490 500
pF1KB5 FTE--HSGLTTGVAFGHHAKFIASTGMDRSLKFYSL
.: :.: . :.:.. ....:: : :
NP_001 YTLQGHTGPVFTVSFSKGGELFASGGADTQVLLWRTNFDELHCKGLTKRNLKRLHFDSPP
230 240 250 260 270 280
>>NP_060058 (OMIM: 609012) WD repeat-containing protein (334 aa)
initn: 458 init1: 229 opt: 353 Z-score: 288.8 bits: 62.4 E(85289): 2.4e-09
Smith-Waterman score: 375; 27.1% identity (65.7% similar) in 207 aa overlap (259-465:40-241)
230 240 250 260 270 280
pF1KB5 LCPSDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVFSASPDATI
:: :::: :.:: : :. . . :.: : :
NP_060 TEAARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLI
10 20 30 40 50 60
290 300 310 320 330 340
pF1KB5 RIWSVPNASCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDET
.::.. ... ... .:. ... .. . .. :.:.:::. . :...:. : . ..
NP_060 KIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS
70 80 90 100 110 120
350 360 370 380 390 400
pF1KB5 SGCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLA
. . : .:.:.. .. .:..: ...:::.: . ..:.:: :.... :...: ..
NP_060 N--YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV
130 140 150 160 170 180
410 420 430 440 450 460
pF1KB5 TAADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEI
... :. ..:: . . .::: :.: :. . :. .: :. . : . : :
NP_060 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL---KLWDYS
190 200 210 220 230 240
470 480 490 500
pF1KB5 LHFTEHSGLTTGVAFGHHAKFIASTGMDRSLKFYSL
NP_060 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV
250 260 270 280 290 300
>>XP_005272220 (OMIM: 609012) PREDICTED: WD repeat-conta (334 aa)
initn: 458 init1: 229 opt: 353 Z-score: 288.8 bits: 62.4 E(85289): 2.4e-09
Smith-Waterman score: 375; 27.1% identity (65.7% similar) in 207 aa overlap (259-465:40-241)
230 240 250 260 270 280
pF1KB5 LCPSDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVFSASPDATI
:: :::: :.:: : :. . . :.: : :
XP_005 TEAARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLI
10 20 30 40 50 60
290 300 310 320 330 340
pF1KB5 RIWSVPNASCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDET
.::.. ... ... .:. ... .. . .. :.:.:::. . :...:. : . ..
XP_005 KIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS
70 80 90 100 110 120
350 360 370 380 390 400
pF1KB5 SGCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLA
. . : .:.:.. .. .:..: ...:::.: . ..:.:: :.... :...: ..
XP_005 N--YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV
130 140 150 160 170 180
410 420 430 440 450 460
pF1KB5 TAADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEI
... :. ..:: . . .::: :.: :. . :. .: :. . : . : :
XP_005 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL---KLWDYS
190 200 210 220 230 240
470 480 490 500
pF1KB5 LHFTEHSGLTTGVAFGHHAKFIASTGMDRSLKFYSL
XP_005 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV
250 260 270 280 290 300
504 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 10:39:33 2016 done: Sat Nov 5 10:39:34 2016
Total Scan time: 8.490 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]