FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5926, 536 aa
  1>>>pF1KB5926 536 - 536 aa - 536 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3325+/-0.000774; mu= 10.1030+/- 0.047
 mean_var=131.2566+/-26.248, 0's: 0 Z-trim(113.1): 7  B-trim: 125 in 1/52
 Lambda= 0.111947
 statistics sampled from 13740 (13741) to 13740 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.422), width:  16
 Scan time:  4.120

The best scores are:                                      opt bits E(32554)
CCDS4805.1 FANCE gene_id:2178|Hs108|chr6           ( 536) 3541 583.0 2.9e-166


>>CCDS4805.1 FANCE gene_id:2178|Hs108|chr6                (536 aa)
 initn: 3541 init1: 3541 opt: 3541  Z-score: 3098.4  bits: 583.0 E(32554): 2.9e-166
Smith-Waterman score: 3541; 100.0% identity (100.0% similar) in 536 aa overlap (1-536:1-536)

               10        20        30        40        50        60
pF1KB5 MATPDAGLPGAEGVEPAPWAQLEAPARLLLQALQAGPEGARRGLGVLRALGSRGWEPFDW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MATPDAGLPGAEGVEPAPWAQLEAPARLLLQALQAGPEGARRGLGVLRALGSRGWEPFDW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 GRLLEALCREEPVVQGPDGRLELKPLLLRLPRICQRNLMSLLMAVRPSLPESGLLSVLQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 GRLLEALCREEPVVQGPDGRLELKPLLLRLPRICQRNLMSLLMAVRPSLPESGLLSVLQI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 AQQDLAPDPDAWLRALGELLRRDLGVGTSMEGASPLSERCQRQLQSLCRGLGLGGRRLKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 AQQDLAPDPDAWLRALGELLRRDLGVGTSMEGASPLSERCQRQLQSLCRGLGLGGRRLKS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 PQAPDPEEEENRDSQQPGKRRKDSEEEAASPEGKRVPKRLRCWEEEEDHEKERPEHKSLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 PQAPDPEEEENRDSQQPGKRRKDSEEEAASPEGKRVPKRLRCWEEEEDHEKERPEHKSLE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 SLADGGSASPIKDQPVMAVKTGEDGSNLDDAKGLAESLELPKAIQDQLPRLQQLLKTLEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 SLADGGSASPIKDQPVMAVKTGEDGSNLDDAKGLAESLELPKAIQDQLPRLQQLLKTLEE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 GLEGLEDAPPVELQLLHECSPSQMDLLCAQLQLPQLSDLGLLRLCTWLLALSPDLSLSNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 GLEGLEDAPPVELQLLHECSPSQMDLLCAQLQLPQLSDLGLLRLCTWLLALSPDLSLSNA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 TVLTRSLFLGRILSLTSSASRLLTTALTSFCAKYTYPVCSALLDPVLQAPGTGPAQTELL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 TVLTRSLFLGRILSLTSSASRLLTTALTSFCAKYTYPVCSALLDPVLQAPGTGPAQTELL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 CCLVKMESLEPDAQVLMLGQILELPWKEETFLVLQSLLERQVEMTPEKFSVLMEKLCKKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 CCLVKMESLEPDAQVLMLGQILELPWKEETFLVLQSLLERQVEMTPEKFSVLMEKLCKKG
              430       440       450       460       470       480

              490       500       510       520       530      
pF1KB5 LAATTSMAYAKLMLTVMTKYQANITETQRLGLAMALEPNTTFLRKSLKAALKHLGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 LAATTSMAYAKLMLTVMTKYQANITETQRLGLAMALEPNTTFLRKSLKAALKHLGP
              490       500       510       520       530      




536 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 10:42:48 2016 done: Sat Nov  5 10:42:49 2016
 Total Scan time:  4.120 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]