FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5929, 507 aa
  1>>>pF1KB5929 507 - 507 aa - 507 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5047+/-0.00109; mu= 8.5531+/- 0.066
 mean_var=140.7147+/-27.688, 0's: 0 Z-trim(107.9): 64  B-trim: 16 in 1/52
 Lambda= 0.108120
 statistics sampled from 9785 (9836) to 9785 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.648), E-opt: 0.2 (0.302), width:  16
 Scan time:  3.130

The best scores are:                                      opt bits E(32554)
CCDS3576.1 NUP54 gene_id:53371|Hs108|chr4          ( 507) 3293 525.6 5.2e-149
CCDS63998.1 NUP54 gene_id:53371|Hs108|chr4         ( 459) 2664 427.4 1.6e-119


>>CCDS3576.1 NUP54 gene_id:53371|Hs108|chr4               (507 aa)
 initn: 3293 init1: 3293 opt: 3293  Z-score: 2788.7  bits: 525.6 E(32554): 5.2e-149
Smith-Waterman score: 3293; 100.0% identity (100.0% similar) in 507 aa overlap (1-507:1-507)

               10        20        30        40        50        60
pF1KB5 MAFNFGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MAFNFGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 FGFGTGFGTTTGTSTGLGTGLGTGLGFGGFNTQQQQQTTLGGLFSQPTQAPTQSNQLINT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 FGFGTGFGTTTGTSTGLGTGLGTGLGFGGFNTQQQQQTTLGGLFSQPTQAPTQSNQLINT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 ASALSAPTLLGDERDAILAKWNQLQAFWGTGKGYFNNNIPPVEFTQENPFCRFKAVGYSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 ASALSAPTLLGDERDAILAKWNQLQAFWGTGKGYFNNNIPPVEFTQENPFCRFKAVGYSC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 MPSNKDEDGLVVLVFNKKETEIRSQQQQLVESLHKVLGGNQTLTVNVEGTKTLPDDQTEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MPSNKDEDGLVVLVFNKKETEIRSQQQQLVESLHKVLGGNQTLTVNVEGTKTLPDDQTEV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 VIYVVERSPNGTSRRVPATTLYAHFEQANIKTQLQQLGVTLSMTRTELSPAQIKQLLQNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 VIYVVERSPNGTSRRVPATTLYAHFEQANIKTQLQQLGVTLSMTRTELSPAQIKQLLQNP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 PAGVDPIIWEQAKVDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIISEDISE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 PAGVDPIIWEQAKVDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIISEDISE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 LQKNQTTSVAKIAQYKRKLMDLSHRTLQVLIKQEIQRKSGYAIQADEEQLRVQLDTIQGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LQKNQTTSVAKIAQYKRKLMDLSHRTLQVLIKQEIQRKSGYAIQADEEQLRVQLDTIQGE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 LNAPTQFKGRLNELMSQIRMQNHFGAVRSEERYYIDADLLREIKQHLKQQQEGLSHLISI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LNAPTQFKGRLNELMSQIRMQNHFGAVRSEERYYIDADLLREIKQHLKQQQEGLSHLISI
              430       440       450       460       470       480

              490       500       
pF1KB5 IKDDLEDIKLVEHGLNETIHIRGGVFS
       :::::::::::::::::::::::::::
CCDS35 IKDDLEDIKLVEHGLNETIHIRGGVFS
              490       500       

>>CCDS63998.1 NUP54 gene_id:53371|Hs108|chr4              (459 aa)
 initn: 2648 init1: 2648 opt: 2664  Z-score: 2259.1  bits: 427.4 E(32554): 1.6e-119
Smith-Waterman score: 2856; 90.3% identity (90.5% similar) in 507 aa overlap (1-507:1-459)

               10        20        30        40        50        60
pF1KB5 MAFNFGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::.:        
CCDS63 MAFNFGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTAL--------
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KB5 FGFGTGFGTTTGTSTGLGTGLGTGLGFGGFNTQQQQQTTLGGLFSQPTQAPTQSNQLINT
                                               ::::::::::::::::::::
CCDS63 ----------------------------------------GGLFSQPTQAPTQSNQLINT
                                                     60        70  

              130       140       150       160       170       180
pF1KB5 ASALSAPTLLGDERDAILAKWNQLQAFWGTGKGYFNNNIPPVEFTQENPFCRFKAVGYSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 ASALSAPTLLGDERDAILAKWNQLQAFWGTGKGYFNNNIPPVEFTQENPFCRFKAVGYSC
             80        90       100       110       120       130  

              190       200       210       220       230       240
pF1KB5 MPSNKDEDGLVVLVFNKKETEIRSQQQQLVESLHKVLGGNQTLTVNVEGTKTLPDDQTEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MPSNKDEDGLVVLVFNKKETEIRSQQQQLVESLHKVLGGNQTLTVNVEGTKTLPDDQTEV
            140       150       160       170       180       190  

              250       260       270       280       290       300
pF1KB5 VIYVVERSPNGTSRRVPATTLYAHFEQANIKTQLQQLGVTLSMTRTELSPAQIKQLLQNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 VIYVVERSPNGTSRRVPATTLYAHFEQANIKTQLQQLGVTLSMTRTELSPAQIKQLLQNP
            200       210       220       230       240       250  

              310       320       330       340       350       360
pF1KB5 PAGVDPIIWEQAKVDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIISEDISE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 PAGVDPIIWEQAKVDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIISEDISE
            260       270       280       290       300       310  

              370       380       390       400       410       420
pF1KB5 LQKNQTTSVAKIAQYKRKLMDLSHRTLQVLIKQEIQRKSGYAIQADEEQLRVQLDTIQGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 LQKNQTTSVAKIAQYKRKLMDLSHRTLQVLIKQEIQRKSGYAIQADEEQLRVQLDTIQGE
            320       330       340       350       360       370  

              430       440       450       460       470       480
pF1KB5 LNAPTQFKGRLNELMSQIRMQNHFGAVRSEERYYIDADLLREIKQHLKQQQEGLSHLISI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 LNAPTQFKGRLNELMSQIRMQNHFGAVRSEERYYIDADLLREIKQHLKQQQEGLSHLISI
            380       390       400       410       420       430  

              490       500       
pF1KB5 IKDDLEDIKLVEHGLNETIHIRGGVFS
       :::::::::::::::::::::::::::
CCDS63 IKDDLEDIKLVEHGLNETIHIRGGVFS
            440       450         




507 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 15:36:47 2016 done: Sat Nov  5 15:36:48 2016
 Total Scan time:  3.130 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]