FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5930, 538 aa
  1>>>pF1KB5930 538 - 538 aa - 538 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0564+/-0.000698; mu= 10.7157+/- 0.042
 mean_var=114.8613+/-23.521, 0's: 0 Z-trim(113.5): 35  B-trim: 215 in 2/51
 Lambda= 0.119671
 statistics sampled from 14094 (14125) to 14094 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.774), E-opt: 0.2 (0.434), width:  16
 Scan time:  3.450

The best scores are:                                      opt bits E(32554)
CCDS10630.1 IL21R gene_id:50615|Hs108|chr16        ( 538) 3838 673.3  2e-193
CCDS13942.1 IL2RB gene_id:3560|Hs108|chr22         ( 551)  324 66.6 8.5e-11


>>CCDS10630.1 IL21R gene_id:50615|Hs108|chr16             (538 aa)
 initn: 3838 init1: 3838 opt: 3838  Z-score: 3586.2  bits: 673.3 E(32554): 2e-193
Smith-Waterman score: 3838; 100.0% identity (100.0% similar) in 538 aa overlap (1-538:1-538)

               10        20        30        40        50        60
pF1KB5 MPRGWAAPLLLLLLQGGWGCPDLVCYTDYLQTVICILEMWNLHPSTLTLTWQDQYEELKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MPRGWAAPLLLLLLQGGWGCPDLVCYTDYLQTVICILEMWNLHPSTLTLTWQDQYEELKD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 EATSCSLHRSAHNATHATYTCHMDVFHFMADDIFSVNITDQSGNYSQECGSFLLAESIKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EATSCSLHRSAHNATHATYTCHMDVFHFMADDIFSVNITDQSGNYSQECGSFLLAESIKP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 APPFNVTVTFSGQYNISWRSDYEDPAFYMLKGKLQYELQYRNRGDPWAVSPRRKLISVDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 APPFNVTVTFSGQYNISWRSDYEDPAFYMLKGKLQYELQYRNRGDPWAVSPRRKLISVDS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 RSVSLLPLEFRKDSSYELQVRAGPMPGSSYQGTWSEWSDPVIFQTQSEELKEGWNPHLLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RSVSLLPLEFRKDSSYELQVRAGPMPGSSYQGTWSEWSDPVIFQTQSEELKEGWNPHLLL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 LLLLVIVFIPAFWSLKTHPLWRLWKKIWAVPSPERFFMPLYKGCSGDFKKWVGAPFTGSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LLLLVIVFIPAFWSLKTHPLWRLWKKIWAVPSPERFFMPLYKGCSGDFKKWVGAPFTGSS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 LELGPWSPEVPSTLEVYSCHPPRSPAKRLQLTELQEPAELVESDGVPKPSFWPTAQNSGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LELGPWSPEVPSTLEVYSCHPPRSPAKRLQLTELQEPAELVESDGVPKPSFWPTAQNSGG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 SAYSEERDRPYGLVSIDTVTVLDAEGPCTWPCSCEDDGYPALDLDAGLEPSPGLEDPLLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SAYSEERDRPYGLVSIDTVTVLDAEGPCTWPCSCEDDGYPALDLDAGLEPSPGLEDPLLD
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 AGTTVLSCGCVSAGSPGLGGPLGSLLDRLKPPLADGEDWAGGLPWGGRSPGGVSESEAGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AGTTVLSCGCVSAGSPGLGGPLGSLLDRLKPPLADGEDWAGGLPWGGRSPGGVSESEAGS
              430       440       450       460       470       480

              490       500       510       520       530        
pF1KB5 PLAGLDMDTFDSGFVGSDCSSPVECDFTSPGDEGPPRSYLRQWVVIPPPLSSPGPQAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PLAGLDMDTFDSGFVGSDCSSPVECDFTSPGDEGPPRSYLRQWVVIPPPLSSPGPQAS
              490       500       510       520       530        

>>CCDS13942.1 IL2RB gene_id:3560|Hs108|chr22              (551 aa)
 initn: 245 init1: 120 opt: 324  Z-score: 307.3  bits: 66.6 E(32554): 8.5e-11
Smith-Waterman score: 357; 25.1% identity (50.6% similar) in 514 aa overlap (5-471:8-478)

                  10                20        30        40         
pF1KB5    MPRGWAAPLLLLLLQ--GGW------GCPDLVCYTDYLQTVICILEMWN----LHPS
              :  :::.:::    .:      :  ...:. .   .. :.   :.    :. .
CCDS13 MAAPALSWRLPLLILLLPLATSWASAAVNGTSQFTCFYNSRANISCV---WSQDGALQDT
               10        20        30        40           50       

           50        60        70        80             90         
pF1KB5 TLTL-TWQDQYEELKDEATSCSLHRSAHNATHATYTCHM-----DVFHFMADDIFSVNIT
       .  . .: :.    .    .: :      ...:...:..     :  .. . :: .. . 
CCDS13 SCQVHAWPDR----RRWNQTCELL----PVSQASWACNLILGAPDSQKLTTVDIVTLRVL
        60            70            80        90       100         

     100         110       120       130         140       150     
pF1KB5 DQSGNY--SQECGSFLLAESIKPAPPFNVTVTF--SGQYNISWRSDYEDPAFYMLKGKLQ
        . :     .   .:   :...   :... :.   . . ::::. .    : .... .:.
CCDS13 CREGVRWRVMAIQDFKPFENLRLMAPISLQVVHVETHRCNISWEISQ---ASHYFERHLE
     110       120       130       140       150          160      

         160       170       180       190       200       210     
pF1KB5 YELQYRNRGDPWAVSPRRKLISVDSRSVSLLPLEFRKDSSYELQVRAGPMPGSSYQGTWS
       .: .  . :  :  .:   :... ...  .    .  :..::.:::. :. :     :::
CCDS13 FEARTLSPGHTWEEAP---LLTLKQKQEWICLETLTPDTQYEFQVRVKPLQGEFT--TWS
        170       180          190       200       210         220 

         220       230          240       250           260        
pF1KB5 EWSDPVIFQTQSEELKEG---WNPHLLLLLLLVIVFIPAFWSL----KTHPLWRLWKKIW
        ::.:. :.:.   : .    :  :::. :  .. ::   . :    .: : :   ::. 
CCDS13 PWSQPLAFRTKPAALGKDTIPWLGHLLVGLSGAFGFIILVYLLINCRNTGP-W--LKKVL
             230       240       250       260       270           

        270       280       290       300       310       320      
pF1KB5 A--VPSPERFFMPLYKGCSGDFKKWVGAPFTGSSLELGPWSPEVPSTLEVYSCHPPRSPA
          .:.: .::  : .  .:: .::...:: .::.  :  .::. : :::          
CCDS13 KCNTPDPSKFFSQLSSEHGGDVQKWLSSPFPSSSFSPGGLAPEI-SPLEVL---------
      280       290       300       310       320                  

        330       340       350       360       370        380     
pF1KB5 KRLQLTELQEPAELVESDGVPKPSFWPTAQNSGGSAYSEERDRPYGLVSI-DTVTVLDAE
       .: ..:.:     :...: ::.:.    . .:. :  :   .. : .  . :.. .   .
CCDS13 ERDKVTQL-----LLQQDKVPEPA----SLSSNHSLTSCFTNQGYFFFHLPDALEIEACQ
      330            340           350       360       370         

         390             400       410            420       430    
pF1KB5 GPCTW-PCSCEDD-----GYPALDLDAGLEPSPGLED-----PLLDAGTTVLSCGCVSAG
          :. : : ::      : :. .    :.:  : .:     :  :    ..: . ... 
CCDS13 VYFTYDPYSEEDPDEGVAGAPTGSSPQPLQPLSGEDDAYCTFPSRD-DLLLFSPSLLGGP
     380       390       400       410       420        430        

          440         450         460       470       480       490
pF1KB5 SPGLGGPLGSLL--DRLKPPLAD--GEDWAGGLPWGGRSPGGVSESEAGSPLAGLDMDTF
       ::   .: ::    .:. : : .   .::    : :  .::                   
CCDS13 SPPSTAPGGSGAGEERMPPSLQERVPRDW-DPQPLGPPTPGVPDLVDFQPPPELVLREAG
      440       450       460        470       480       490       

              500       510       520       530              
pF1KB5 DSGFVGSDCSSPVECDFTSPGDEGPPRSYLRQWVVIPPPLSSPGPQAS      
                                                             
CCDS13 EEVPDAGPREGVSFPWSRPPGQGEFRALNARLPLNTDAYLSLQELQGQDPTHLV
       500       510       520       530       540       550 




538 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 15:37:23 2016 done: Sat Nov  5 15:37:23 2016
 Total Scan time:  3.450 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]