Result of FASTA (ccds) for
pF1KB5946
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5946, 495 aa
1>>>pF1KB5946 495 - 495 aa - 495 aa
Library: human.CCDS.faa
18921897 residues in 33420 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5343+/-0.00105; mu= 13.1422+/- 0.063
mean_var=109.0693+/-22.257, 0's: 0 Z-trim(106.9): 130 B-trim: 222 in 1/50
Lambda= 0.122807
statistics sampled from 9259 (9391) to 9259 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.645), E-opt: 0.2 (0.281), width: 16
Scan time: 1.490
The best scores are: opt bits E(33420)
CCDS1400.1 NR5A2 gene_id:2494|Hs109|chr1 ( 495) 3315 598.4 6e-171
CCDS1401.1 NR5A2 gene_id:2494|Hs109|chr1 ( 541) 3187 575.7 4.4e-164
CCDS60383.1 NR5A2 gene_id:2494|Hs109|chr1 ( 469) 3149 569.0 4.1e-162
CCDS6856.1 NR5A1 gene_id:2516|Hs109|chr9 ( 461) 1900 347.7 1.7e-95
CCDS6744.1 NR4A3 gene_id:8013|Hs109|chr9 ( 443) 416 84.7 2.3e-16
CCDS6646.1 RORB gene_id:6096|Hs109|chr9 ( 459) 415 84.6 2.7e-16
CCDS6743.1 NR4A3 gene_id:8013|Hs109|chr9 ( 626) 413 84.3 4.4e-16
CCDS6742.1 NR4A3 gene_id:8013|Hs109|chr9 ( 637) 413 84.3 4.4e-16
CCDS86887.1 NR4A2 gene_id:4929|Hs109|chr2 ( 535) 404 82.7 1.2e-15
CCDS45359.1 NR2F2 gene_id:7026|Hs109|chr15 ( 261) 399 81.6 1.2e-15
CCDS2201.1 NR4A2 gene_id:4929|Hs109|chr2 ( 598) 404 82.7 1.3e-15
CCDS45358.1 NR2F2 gene_id:7026|Hs109|chr15 ( 281) 399 81.6 1.3e-15
CCDS55340.1 NR6A1 gene_id:2649|Hs109|chr9 ( 475) 401 82.1 1.5e-15
CCDS35137.1 NR6A1 gene_id:2649|Hs109|chr9 ( 480) 400 81.9 1.7e-15
CCDS35172.1 RXRA gene_id:6256|Hs109|chr9 ( 462) 397 81.4 2.4e-15
CCDS1517.1 ESRRG gene_id:2104|Hs109|chr1 ( 435) 396 81.2 2.6e-15
CCDS41468.1 ESRRG gene_id:2104|Hs109|chr1 ( 458) 396 81.2 2.7e-15
CCDS8818.1 NR4A1 gene_id:3164|Hs109|chr12 ( 598) 396 81.3 3.4e-15
CCDS55828.1 NR4A1 gene_id:3164|Hs109|chr12 ( 611) 396 81.3 3.5e-15
CCDS65127.1 NR6A1 gene_id:2649|Hs109|chr9 ( 476) 394 80.9 3.6e-15
CCDS73471.1 NR4A1 gene_id:3164|Hs109|chr12 ( 652) 396 81.3 3.6e-15
CCDS4768.1 RXRB gene_id:6257|Hs109|chr6 ( 533) 392 80.5 5.1e-15
CCDS59007.1 RXRB gene_id:6257|Hs109|chr6 ( 537) 392 80.5 5.1e-15
CCDS58061.1 ESRRG gene_id:2104|Hs109|chr1 ( 470) 390 80.1 5.8e-15
CCDS9850.2 ESRRB gene_id:2103|Hs109|chr14 ( 508) 388 79.8 8e-15
CCDS1248.1 RXRG gene_id:6258|Hs109|chr1 ( 463) 384 79.1 1.2e-14
CCDS72970.1 RXRG gene_id:6258|Hs109|chr1 ( 340) 381 78.5 1.4e-14
CCDS45271.1 RORA gene_id:6095|Hs109|chr15 ( 468) 380 78.4 2e-14
CCDS10177.1 RORA gene_id:6095|Hs109|chr15 ( 523) 380 78.4 2.2e-14
CCDS10178.1 RORA gene_id:6095|Hs109|chr15 ( 548) 380 78.4 2.3e-14
CCDS10179.1 RORA gene_id:6095|Hs109|chr15 ( 556) 380 78.4 2.3e-14
CCDS60830.1 ESRRA gene_id:2101|Hs109|chr11 ( 422) 378 78.0 2.3e-14
CCDS41667.1 ESRRA gene_id:2101|Hs109|chr11 ( 423) 378 78.0 2.3e-14
CCDS11361.1 NR1D1 gene_id:9572|Hs109|chr17 ( 614) 373 77.2 5.8e-14
CCDS30856.1 RORC gene_id:6097|Hs109|chr1 ( 497) 368 76.3 9.1e-14
CCDS1004.1 RORC gene_id:6097|Hs109|chr1 ( 518) 368 76.3 9.4e-14
CCDS58236.1 RARG gene_id:5916|Hs109|chr12 ( 382) 364 75.5 1.2e-13
CCDS41790.1 RARG gene_id:5916|Hs109|chr12 ( 443) 364 75.5 1.4e-13
CCDS8850.1 RARG gene_id:5916|Hs109|chr12 ( 454) 364 75.5 1.4e-13
CCDS58060.1 ESRRG gene_id:2104|Hs109|chr1 ( 396) 363 75.3 1.4e-13
CCDS42317.1 RARA gene_id:5914|Hs109|chr17 ( 457) 359 74.6 2.6e-13
CCDS11366.1 RARA gene_id:5914|Hs109|chr17 ( 462) 359 74.6 2.6e-13
CCDS74905.1 NR2C2 gene_id:7182|Hs109|chr3 ( 596) 360 74.9 2.8e-13
CCDS2621.1 NR2C2 gene_id:7182|Hs109|chr3 ( 615) 360 74.9 2.9e-13
CCDS2641.1 THRB gene_id:7068|Hs109|chr3 ( 461) 357 74.3 3.3e-13
CCDS42316.1 THRA gene_id:7067|Hs109|chr17 ( 410) 356 74.1 3.4e-13
CCDS58546.1 THRA gene_id:7067|Hs109|chr17 ( 451) 356 74.1 3.7e-13
CCDS11360.1 THRA gene_id:7067|Hs109|chr17 ( 490) 356 74.1 3.9e-13
CCDS2642.1 RARB gene_id:5915|Hs109|chr3 ( 448) 355 73.9 4.1e-13
CCDS10375.1 NR2F2 gene_id:7026|Hs109|chr15 ( 414) 351 73.2 6.3e-13
>>CCDS1400.1 NR5A2 gene_id:2494|Hs109|chr1 (495 aa)
initn: 3315 init1: 3315 opt: 3315 Z-score: 3182.7 bits: 598.4 E(33420): 6e-171
Smith-Waterman score: 3315; 100.0% identity (100.0% similar) in 495 aa overlap (1-495:1-495)
10 20 30 40 50 60
pF1KB5 MSSNSDTGDLQESLKHGLTPIVSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MSSNSDTGDLQESLKHGLTPIVSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 KGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 KFGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KFGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 HAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 HAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 YSYMDSYQTSSPASIPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 YSYMDSYQTSSPASIPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 KMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 TGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 TGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLEN
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 FQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 FQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDV
430 440 450 460 470 480
490
pF1KB5 PYNNLLIEMLHAKRA
:::::::::::::::
CCDS14 PYNNLLIEMLHAKRA
490
>>CCDS1401.1 NR5A2 gene_id:2494|Hs109|chr1 (541 aa)
initn: 3301 init1: 3180 opt: 3187 Z-score: 3059.6 bits: 575.7 E(33420): 4.4e-164
Smith-Waterman score: 3187; 96.8% identity (98.4% similar) in 493 aa overlap (3-495:55-541)
10 20 30
pF1KB5 MSSNSDTGDLQESLKHGLTPIVSQFKMVNYSY
:... :.. :... :::::::::::
CCDS14 LPDRHGSPIPARGRLVMLPKVETEALGLARSHGEQGQMPENMQ------VSQFKMVNYSY
30 40 50 60 70
40 50 60 70 80 90
pF1KB5 DEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRC
80 90 100 110 120 130
100 110 120 130 140 150
pF1KB5 PYCRFQKCLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQQKKALIRANGLKLEAMSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PYCRFQKCLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQQKKALIRANGLKLEAMSQ
140 150 160 170 180 190
160 170 180 190 200 210
pF1KB5 VIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGY
200 210 220 230 240 250
220 230 240 250 260 270
pF1KB5 QTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEPDEPQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEPDEPQV
260 270 280 290 300 310
280 290 300 310 320 330
pF1KB5 QAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLL
320 330 340 350 360 370
340 350 360 370 380 390
pF1KB5 QNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKL
380 390 400 410 420 430
400 410 420 430 440 450
pF1KB5 RSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 RSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQ
440 450 460 470 480 490
460 470 480 490
pF1KB5 LLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKRA
:::::::::::::::::::::::::::::::::::::::::::
CCDS14 LLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKRA
500 510 520 530 540
>>CCDS60383.1 NR5A2 gene_id:2494|Hs109|chr1 (469 aa)
initn: 3149 init1: 3149 opt: 3149 Z-score: 3024.1 bits: 569.0 E(33420): 4.1e-162
Smith-Waterman score: 3149; 100.0% identity (100.0% similar) in 469 aa overlap (27-495:1-469)
10 20 30 40 50 60
pF1KB5 MSSNSDTGDLQESLKHGLTPIVSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESC
::::::::::::::::::::::::::::::::::
CCDS60 MVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESC
10 20 30
70 80 90 100 110 120
pF1KB5 KGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 KGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRN
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB5 KFGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 KFGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLN
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB5 HAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 HAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMG
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB5 YSYMDSYQTSSPASIPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 YSYMDSYQTSSPASIPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMC
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB5 KMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 KMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLV
280 290 300 310 320 330
370 380 390 400 410 420
pF1KB5 TGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 TGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLEN
340 350 360 370 380 390
430 440 450 460 470 480
pF1KB5 FQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 FQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDV
400 410 420 430 440 450
490
pF1KB5 PYNNLLIEMLHAKRA
:::::::::::::::
CCDS60 PYNNLLIEMLHAKRA
460
>>CCDS6856.1 NR5A1 gene_id:2516|Hs109|chr9 (461 aa)
initn: 1857 init1: 879 opt: 1900 Z-score: 1828.2 bits: 347.7 E(33420): 1.7e-95
Smith-Waterman score: 1901; 61.5% identity (82.6% similar) in 470 aa overlap (28-494:1-460)
10 20 30 40 50 60
pF1KB5 MSSNSDTGDLQESLKHGLTPIVSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESC
..:::::::.:::::::::::::::::::::::
CCDS68 MDYSYDEDLDELCPVCGDKVSGYHYGLLTCESC
10 20 30
70 80 90 100 110 120
pF1KB5 KGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRN
::::::::::::.::: :.:.:.::::::::::.:::::::.:::.::::::::::::::
CCDS68 KGFFKRTVQNNKHYTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRN
40 50 60 70 80 90
130 140 150 160 170
pF1KB5 KFGPMYKRDRALKQQKKALIRANGLKLEAMSQV-IQAMPSDLTISSAIQNIHSAS-KGLP
:::::::::::::::::: :::::.:::. . . : ..:. :::
CCDS68 KFGPMYKRDRALKQQKKAQIRANGFKLETGPPMGVPPPPPPAPDYVLPPSLHGPEPKGL-
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB5 LNHAALPPTDYDRSPFVTSPISMTMP-PHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPES
:: ::. . : . . :..: :: : :: : ::.::::::::.::.: :.
CCDS68 ---AAGPPAG-PLGDFGAPALPMAVPGAHGPLAGY-LYPAFPGRAIKSEYPEPYASPPQP
160 170 180 190 200
240 250 260 270 280 290
pF1KB5 IMGYSYMDSYQTSSPASIPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFG
. :.: . . ...: ..:.:::.::. :::: ::.:.:.. ::. ..:. .. ..::
CCDS68 GLPYGYPEPF-SGGP-NVPELILQLLQLEPDEDQVRARILGCLQEP--TKSRPDQPAAFG
210 220 230 240 250 260
300 310 320 330 340 350
pF1KB5 LMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI
:.:.:::::..:::.::: . :.::.: ::: ::::::::::..::::::: :::::::
CCDS68 LLCRMADQTFISIVDWARRCMVFKELEVADQMTLLQNCWSELLVFDHIYRQVQHGKEGSI
270 280 290 300 310 320
360 370 380 390 400 410
pF1KB5 FLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKN
.:::::.:. . .:.:::. :..:. .::::: .: .::.:..:::::::..:::::.:
CCDS68 LLVTGQEVELTTVATQAGSLLHSLVLRAQELVLQLLALQLDRQEFVCLKFIILFSLDLKF
330 340 350 360 370 380
420 430 440 450 460 470
pF1KB5 LENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLN
:.: ::. .::..::::::::.:.::. .:: :::: : :.::.::::.::::.:::.
CCDS68 LNNHILVKDAQEKANAALLDYTLCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLG
390 400 410 420 430 440
480 490
pF1KB5 GDVPYNNLLIEMLHAKRA
...: ::::::::.::.
CCDS68 NEMPRNNLLIEMLQAKQT
450 460
>>CCDS6744.1 NR4A3 gene_id:8013|Hs109|chr9 (443 aa)
initn: 388 init1: 388 opt: 416 Z-score: 407.5 bits: 84.7 E(33420): 2.3e-16
Smith-Waterman score: 416; 42.7% identity (67.3% similar) in 150 aa overlap (37-179:289-435)
10 20 30 40 50 60
pF1KB5 TGDLQESLKHGLTPIVSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKR
: : ::::... :::. :::.:::::::
CCDS67 LGLTPSPTASSLLGESPSLPSPPSRSSSSGEGTCAVCGDNAACQHYGVRTCEGCKGFFKR
260 270 280 290 300 310
70 80 90 100 110 120
pF1KB5 TVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRNKFGPMY
:::.: .:.:. :.:: .:: .:.:: :::::::::::: :.::.: ..: : : .
CCDS67 TVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVRTDSLKGRR---GRLP
320 330 340 350 360 370
130 140 150 160 170
pF1KB5 KRDRALKQQKKALIRANGLKLEAMSQVIQAM----PSDLT---ISSAIQNIHSASKGLPL
.. .. ::. . . . :. ...:. : :: .: :. .. ..:: :
CCDS67 SKPKSPLQQEPSQPSPPSPPICMMNALVRALTDSTPRDLDYSRVSFMISCFQMNDQGLYL
380 390 400 410 420 430
180 190 200 210 220 230
pF1KB5 NHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIM
CCDS67 WLLVIRVD
440
>>CCDS6646.1 RORB gene_id:6096|Hs109|chr9 (459 aa)
initn: 457 init1: 364 opt: 415 Z-score: 406.3 bits: 84.6 E(33420): 2.7e-16
Smith-Waterman score: 493; 27.1% identity (59.7% similar) in 457 aa overlap (40-480:10-437)
10 20 30 40 50 60
pF1KB5 LQESLKHGLTPIVSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQ
: .:::: :: :::..:::.:::::.:. :
CCDS66 MRAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQ
10 20 30
70 80 90 100 110 120
pF1KB5 NNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRM-RGGRNK-FGPMYK
:: :.: ...:: ::.:.:.:: .::.::::..::. .::. :: . :.. .. . :
CCDS66 NNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQK
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB5 RDRALKQQKKALIRANGLKLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPT
... :..:.. . .: . ::...: .. .::....:... ..: : ..
CCDS66 HQQRLQEQRQ---QQSG-EAEALARVYSS-----SISNGLSNLNNETSGTYANGHVI---
100 110 120 130 140
190 200 210 220 230 240
pF1KB5 DYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSY
: .: . : : : : . : . ::.: :: : ... :: ...
CCDS66 DLPKSEGYYNVDSGQPSPDQS--GLDMTG---IKQIKQEPIYDLTSVP-NLFTYSSFNNG
150 160 170 180 190 200
250 260 270 280 290
pF1KB5 QTSSPAS---IPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTF------GL
: . . : .. ...: . . : : :.: . .:..... .:
CCDS66 QLAPGITMTEIDRIAQNIIKSHLETCQY---TMEELHQLAWQTHTYEEIKAYQSKSREAL
210 220 230 240 250
300 310 320 330 340 350
pF1KB5 MCKMADQTLFSI---VEWARSSIFFRELKVDDQMKLLQN-CWSELLILDHIYRQVVHGKE
. : : .: ::.:. : :: .::. ::.. : .:. .. : . .
CCDS66 WQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLV--RMCR--AFNPL
260 270 280 290 300 310
360 370 380 390 400 410
pF1KB5 GSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLD
.. : :. .... . .. ..:...: ... .: :::. ..:.. .. ::.: :
CCDS66 NNTVLFEGKYGGMQMFKALGS---DDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPD
320 330 340 350 360 370
420 430 440 450 460 470
pF1KB5 VKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAI-SMQAEEYLYY
: . . :. .::.. :: . :. . : ...:. ..: : :. ....:. .
CCDS66 RAWLIEPRKVQKLQEKIYFALQHVIQKNH-LDDETLAKLIAKIPTITAVCNLHGEKLQVF
380 390 400 410 420 430
480 490
pF1KB5 KHLNGDVPYNNLLIEMLHAKRA
:. . ..
CCDS66 KQSHPEIVNTLFPPLYKELFNPDCATGCK
440 450
>>CCDS6743.1 NR4A3 gene_id:8013|Hs109|chr9 (626 aa)
initn: 435 init1: 388 opt: 413 Z-score: 402.5 bits: 84.3 E(33420): 4.4e-16
Smith-Waterman score: 413; 45.5% identity (68.9% similar) in 132 aa overlap (37-164:289-417)
10 20 30 40 50 60
pF1KB5 TGDLQESLKHGLTPIVSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKR
: : ::::... :::. :::.:::::::
CCDS67 LGLTPSPTASSLLGESPSLPSPPSRSSSSGEGTCAVCGDNAACQHYGVRTCEGCKGFFKR
260 270 280 290 300 310
70 80 90 100 110 120
pF1KB5 TVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRNKFGPMY
:::.: .:.:. :.:: .:: .:.:: :::::::::::: :.::.: ..: : : .
CCDS67 TVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVRTDSLKGRR---GRLP
320 330 340 350 360 370
130 140 150 160 170 180
pF1KB5 KRDRALKQQKKALIRANGLKLEAMSQVIQAM----PSDLTISSAIQNIHSASKGLPLNHA
.. .. ::. . . . :. ...:. : :: :
CCDS67 SKPKSPLQQEPSQPSPPSPPICMMNALVRALTDSTPRDLDYSRYCPTDQAAAGTDAEHVQ
380 390 400 410 420 430
190 200 210 220 230 240
pF1KB5 ALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYS
CCDS67 QFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNTAEDKFVF
440 450 460 470 480 490
>>CCDS6742.1 NR4A3 gene_id:8013|Hs109|chr9 (637 aa)
initn: 435 init1: 388 opt: 413 Z-score: 402.4 bits: 84.3 E(33420): 4.4e-16
Smith-Waterman score: 413; 45.5% identity (68.9% similar) in 132 aa overlap (37-164:300-428)
10 20 30 40 50 60
pF1KB5 TGDLQESLKHGLTPIVSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKR
: : ::::... :::. :::.:::::::
CCDS67 LGLTPSPTASSLLGESPSLPSPPSRSSSSGEGTCAVCGDNAACQHYGVRTCEGCKGFFKR
270 280 290 300 310 320
70 80 90 100 110 120
pF1KB5 TVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRNKFGPMY
:::.: .:.:. :.:: .:: .:.:: :::::::::::: :.::.: ..: : : .
CCDS67 TVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVRTDSLKGRR---GRLP
330 340 350 360 370 380
130 140 150 160 170 180
pF1KB5 KRDRALKQQKKALIRANGLKLEAMSQVIQAM----PSDLTISSAIQNIHSASKGLPLNHA
.. .. ::. . . . :. ...:. : :: :
CCDS67 SKPKSPLQQEPSQPSPPSPPICMMNALVRALTDSTPRDLDYSRYCPTDQAAAGTDAEHVQ
390 400 410 420 430 440
190 200 210 220 230 240
pF1KB5 ALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYS
CCDS67 QFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNTAEDKFVF
450 460 470 480 490 500
>>CCDS86887.1 NR4A2 gene_id:4929|Hs109|chr2 (535 aa)
initn: 510 init1: 404 opt: 404 Z-score: 394.8 bits: 82.7 E(33420): 1.2e-15
Smith-Waterman score: 405; 43.4% identity (69.0% similar) in 145 aa overlap (37-171:197-341)
10 20 30 40 50 60
pF1KB5 TGDLQESLKHGLTPIVSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKR
: :: ::::... :::. :::.:::::::
CCDS86 MGFPGLQIGHASQLLDTQVPSPPSRGSPSNEGLCAVCGDNAACQHYGVRTCEGCKGFFKR
170 180 190 200 210 220
70 80 90 100 110 120
pF1KB5 TVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRGGRNKFGPMY
:::.: .:.:. :.:: .:: .:.:: ::::::::.::: :.::.: ..: :...
CCDS86 TVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKP
230 240 250 260 270 280
130 140 150 160 170
pF1KB5 KRDRALKQQK------KALIRANGLKLEAMSQV----IQAMPSDLTISSAIQNIHSASKG
: . . . .::.::. . ::... .:: :. .. :.:.
CCDS86 KSPQEPSPPSPPVSLISALVRAHVDSNPAMTSLDYSRFQANPDYQMSGDDTQHIQQFYDL
290 300 310 320 330 340
180 190 200 210 220 230
pF1KB5 LPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPE
CCDS86 LTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPVEGKLIFCNGVV
350 360 370 380 390 400
>>CCDS45359.1 NR2F2 gene_id:7026|Hs109|chr15 (261 aa)
initn: 400 init1: 275 opt: 399 Z-score: 394.5 bits: 81.6 E(33420): 1.2e-15
Smith-Waterman score: 399; 36.3% identity (69.9% similar) in 193 aa overlap (299-490:59-247)
270 280 290 300 310 320
pF1KB5 EPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQ
.:..: . ::: :::::. :: .:.. ::
CCDS45 ISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQ
30 40 50 60 70 80
330 340 350 360 370 380
pF1KB5 MKLLQNCWSELLILDHIYRQV-VHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQE
. ::. ::::..:. .. .: . .. ..: ... . :... : .... ::
CCDS45 VALLRLTWSELFVLNAAQCSMPLH--VAPLLAAAGLHAS-PMSADRVVAFMDHIRIF-QE
90 100 110 120 130 140
390 400 410 420 430 440
pF1KB5 LVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQT
: ::..:. :. :. ::: .:::. :. .: . ::..::. . :: .:. .::.:
CCDS45 QVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQP
150 160 170 180 190 200
450 460 470 480 490
pF1KB5 EKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKRA
.::.:::::: .:..: .. : :.. .: : .: ..:. .::
CCDS45 TRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMAIQ
210 220 230 240 250 260
495 residues in 1 query sequences
18921897 residues in 33420 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Jul 16 15:50:04 2019 done: Tue Jul 16 15:50:05 2019
Total Scan time: 1.490 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]