FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5959, 513 aa
  1>>>pF1KB5959 513 - 513 aa - 513 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.8122+/-0.000818; mu= -0.3791+/- 0.049
 mean_var=228.6554+/-46.817, 0's: 0 Z-trim(116.4): 3  B-trim: 310 in 2/51
 Lambda= 0.084817
 statistics sampled from 17067 (17070) to 17067 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.816), E-opt: 0.2 (0.524), width:  16
 Scan time:  3.680

The best scores are:                                      opt bits E(32554)
CCDS6067.1 ZNF395 gene_id:55893|Hs108|chr8         ( 513) 3560 447.9 1.2e-125
CCDS34913.1 ZNF704 gene_id:619279|Hs108|chr8       ( 412)  591 84.6 2.4e-16


>>CCDS6067.1 ZNF395 gene_id:55893|Hs108|chr8              (513 aa)
 initn: 3560 init1: 3560 opt: 3560  Z-score: 2369.1  bits: 447.9 E(32554): 1.2e-125
Smith-Waterman score: 3560; 100.0% identity (100.0% similar) in 513 aa overlap (1-513:1-513)

               10        20        30        40        50        60
pF1KB5 MASVLSRRLGKRSLLGARVLGPSASEGPSAAPPSEPLLEGAAPQPFTTSDDTPCQEQPKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MASVLSRRLGKRSLLGARVLGPSASEGPSAAPPSEPLLEGAAPQPFTTSDDTPCQEQPKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 VLKAPSTSGLQQVAFQPGQKVYVWYGGQECTGLVEQHSWMEGQVTVWLLEQKLQVCCRVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 VLKAPSTSGLQQVAFQPGQKVYVWYGGQECTGLVEQHSWMEGQVTVWLLEQKLQVCCRVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 EVWLAELQGPCPQAPPLEPGAQALAYRPVSRNIDVPKRKSDAVEMDEMMAAMVLTSLSCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 EVWLAELQGPCPQAPPLEPGAQALAYRPVSRNIDVPKRKSDAVEMDEMMAAMVLTSLSCS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 PVVQSPPGTEANFSASRAACDPWKESGDISDSGSSTTSGHWSGSSGVSTPSPPHPQASPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 PVVQSPPGTEANFSASRAACDPWKESGDISDSGSSTTSGHWSGSSGVSTPSPPHPQASPK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 YLGDAFGSPQTDHGFETDPDPFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGIKRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 YLGDAFGSPQTDHGFETDPDPFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGIKRH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 VKALHLGDTVDSDQFKREEDFYYTEVQLKEESAAAAAAAAAGTPVPGTPTSEPAPTPSMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 VKALHLGDTVDSDQFKREEDFYYTEVQLKEESAAAAAAAAAGTPVPGTPTSEPAPTPSMT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 GLPLSALPPPLHKAQSSGPEHPGPESSLPSGALSKSAPGSFWHIQADHAYQALPSFQIPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 GLPLSALPPPLHKAQSSGPEHPGPESSLPSGALSKSAPGSFWHIQADHAYQALPSFQIPV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 SPHIYTSVSWAAAPSAACSLSPVRSRSLSFSEPQQPAPAMKSHLIVTSPPRAQSGARKAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 SPHIYTSVSWAAAPSAACSLSPVRSRSLSFSEPQQPAPAMKSHLIVTSPPRAQSGARKAR
              430       440       450       460       470       480

              490       500       510   
pF1KB5 GEAKKCRKVYGIEHRDQWCTACRWKKACQRFLD
       :::::::::::::::::::::::::::::::::
CCDS60 GEAKKCRKVYGIEHRDQWCTACRWKKACQRFLD
              490       500       510   

>>CCDS34913.1 ZNF704 gene_id:619279|Hs108|chr8            (412 aa)
 initn: 819 init1: 336 opt: 591  Z-score: 407.1  bits: 84.6 E(32554): 2.4e-16
Smith-Waterman score: 952; 45.2% identity (67.2% similar) in 378 aa overlap (149-513:64-412)

      120       130       140       150         160       170      
pF1KB5 VEEVWLAELQGPCPQAPPLEPGAQALAYRPVSRNIDVP--KRKSDAVEMDEMMAAMVLTS
                                     :: :::::  ...:. ..::.. :::::::
CCDS34 TADTKKASRILDHEKENTRSICLLEQKRKVVSSNIDVPPARKSSEELDMDKVTAAMVLTS
            40        50        60        70        80        90   

        180       190       200       210       220       230      
pF1KB5 LSCSPVVQSPPGTEANFSASRAACDPWKESGDISDSGSSTTSGHWSGSSGVSTPSPPHPQ
       :: ::.:.::: .. : : : .    :::.: . .: ::.    ::. :  :.:: : : 
CCDS34 LSTSPLVRSPP-VRPNESLSGS----WKEGGCVPSSTSSSGYWSWSAPSDQSNPSTPSPP
           100        110           120       130       140        

        240        250        260       270       280       290    
pF1KB5 ASPKYLGDAFGSP-QTDHGF-ETDPDPFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSI
        :   .   : :: : : :. :.. . .:.::: :::::::.:::.:::: :::::: . 
CCDS34 LSADSF-KPFRSPAQPDDGIDEAEASNLLFDEPIPRKRKNSMKVMFKCLWKNCGKVLSTA
      150        160       170       180       190       200       

          300       310       320       330       340       350    
pF1KB5 VGIKRHVKALHLGDTVDSDQFKREEDFYYTEVQLKEESAAAAAAAAAGTPVPGTPTSEPA
       .::..:....::: . :::    ::::::::..:. .:.: . .. :  ::        .
CCDS34 AGIQKHIRTIHLGRVGDSDYSDGEEDFYYTEIKLNTDSVADGLSSLA--PV--------S
       210       220       230       240       250                 

          360       370       380         390       400       410  
pF1KB5 PTPSMTGLPLSALPPPLHKAQSSGPEHP--GPESSLPSGALSKSAPGSFWHIQADHAYQA
       :. :.      : :: .   .::  : :    :..: .  ::.::: ... ...::::::
CCDS34 PSQSL------ASPPTFPIPDSSRTETPCAKTETKLMT-PLSRSAPTTLYLVHTDHAYQA
       260             270       280        290       300       310

            420            430       440         450       460     
pF1KB5 LPSFQIPVS----PHIYT-SVSWAAAPSAACSL--SPVRSRSLSFSEPQQPAPAMKSHLI
        :   :: :    :.  . :.:: . : .  ..  ::.. . .. .: .: :     : .
CCDS34 TPPVTIPGSAKFTPNGSSFSISWQSPPVTFTGIPVSPTH-HPVGTGEQRQHA-----HTV
              320       330       340        350       360         

         470       480       490       500       510   
pF1KB5 VTSPPRAQSGARKARGEAKKCRKVYGIEHRDQWCTACRWKKACQRFLD
       ..::::.  . :: :::.::::::::.:.::.::::::::::::::::
CCDS34 LSSPPRGTVSLRKPRGEGKKCRKVYGMENRDMWCTACRWKKACQRFLD
          370       380       390       400       410  




513 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 10:46:40 2016 done: Sat Nov  5 10:46:41 2016
 Total Scan time:  3.680 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]