FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5959, 513 aa
  1>>>pF1KB5959 513 - 513 aa - 513 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.8676+/-0.000323; mu= -0.6894+/- 0.020
 mean_var=254.3199+/-52.518, 0's: 0 Z-trim(124.1): 2  B-trim: 685 in 1/57
 Lambda= 0.080424
 statistics sampled from 45180 (45182) to 45180 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.815), E-opt: 0.2 (0.53), width:  16
 Scan time: 10.880

The best scores are:                                      opt bits E(85289)
NP_061130 (OMIM: 609494) zinc finger protein 395 [ ( 513) 3560 425.7 1.5e-118
NP_064446 (OMIM: 609493) SLC2A4 regulator [Homo sa ( 387)  281 45.2 0.00042


>>NP_061130 (OMIM: 609494) zinc finger protein 395 [Homo  (513 aa)
 initn: 3560 init1: 3560 opt: 3560  Z-score: 2249.1  bits: 425.7 E(85289): 1.5e-118
Smith-Waterman score: 3560; 100.0% identity (100.0% similar) in 513 aa overlap (1-513:1-513)

               10        20        30        40        50        60
pF1KB5 MASVLSRRLGKRSLLGARVLGPSASEGPSAAPPSEPLLEGAAPQPFTTSDDTPCQEQPKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MASVLSRRLGKRSLLGARVLGPSASEGPSAAPPSEPLLEGAAPQPFTTSDDTPCQEQPKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 VLKAPSTSGLQQVAFQPGQKVYVWYGGQECTGLVEQHSWMEGQVTVWLLEQKLQVCCRVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 VLKAPSTSGLQQVAFQPGQKVYVWYGGQECTGLVEQHSWMEGQVTVWLLEQKLQVCCRVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 EVWLAELQGPCPQAPPLEPGAQALAYRPVSRNIDVPKRKSDAVEMDEMMAAMVLTSLSCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 EVWLAELQGPCPQAPPLEPGAQALAYRPVSRNIDVPKRKSDAVEMDEMMAAMVLTSLSCS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 PVVQSPPGTEANFSASRAACDPWKESGDISDSGSSTTSGHWSGSSGVSTPSPPHPQASPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 PVVQSPPGTEANFSASRAACDPWKESGDISDSGSSTTSGHWSGSSGVSTPSPPHPQASPK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 YLGDAFGSPQTDHGFETDPDPFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGIKRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 YLGDAFGSPQTDHGFETDPDPFLLDEPAPRKRKNSVKVMYKCLWPNCGKVLRSIVGIKRH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 VKALHLGDTVDSDQFKREEDFYYTEVQLKEESAAAAAAAAAGTPVPGTPTSEPAPTPSMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 VKALHLGDTVDSDQFKREEDFYYTEVQLKEESAAAAAAAAAGTPVPGTPTSEPAPTPSMT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 GLPLSALPPPLHKAQSSGPEHPGPESSLPSGALSKSAPGSFWHIQADHAYQALPSFQIPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 GLPLSALPPPLHKAQSSGPEHPGPESSLPSGALSKSAPGSFWHIQADHAYQALPSFQIPV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 SPHIYTSVSWAAAPSAACSLSPVRSRSLSFSEPQQPAPAMKSHLIVTSPPRAQSGARKAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 SPHIYTSVSWAAAPSAACSLSPVRSRSLSFSEPQQPAPAMKSHLIVTSPPRAQSGARKAR
              430       440       450       460       470       480

              490       500       510   
pF1KB5 GEAKKCRKVYGIEHRDQWCTACRWKKACQRFLD
       :::::::::::::::::::::::::::::::::
NP_061 GEAKKCRKVYGIEHRDQWCTACRWKKACQRFLD
              490       500       510   

>>NP_064446 (OMIM: 609493) SLC2A4 regulator [Homo sapien  (387 aa)
 initn: 596 init1: 252 opt: 281  Z-score: 194.7  bits: 45.2 E(85289): 0.00042
Smith-Waterman score: 632; 36.9% identity (54.6% similar) in 390 aa overlap (134-513:70-387)

           110       120       130       140       150       160   
pF1KB5 VTVWLLEQKLQVCCRVEEVWLAELQGPCPQAPPLEPGAQALAYRPVSRNIDVPKRKSDA-
                                     ::    :: :    : : .: :: ...   
NP_064 PPQGSSVGGGFAGLEFARPQESEPRASDLGAPRTWTGAAAGPRTP-SAHIPVPAQRATPG
      40        50        60        70        80         90        

             170       180       190       200       210           
pF1KB5 -VEMDEMMAAMVLTSLSCSPVVQSPPGTEANFSASRAACDPWKESGDISDSGS---STTS
        ...::.::: .::::: ::.. . :   : ::  . . .::::.  .   ::   :..:
NP_064 KARLDEVMAAAALTSLSTSPLLLGAP--VAAFSP-EPGLEPWKEAL-VRPPGSYSSSSNS
      100       110       120         130        140        150    

      220            230       240       250       260       270   
pF1KB5 GHW-----SGSSGVSTPSPPHPQASPKYLGDAFGSPQTDHGFETDPDPFLLDEPAPRKRK
       : :     : .:. :::::: :             :.. :        ::. ::. ::::
NP_064 GDWGWDLASDQSSPSTPSPPLP-------------PEAAH--------FLFGEPTLRKRK
          160       170                    180               190   

           280       290       300       310       320       330   
pF1KB5 NSVKVMYKCLWPNCGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDFYYTEVQLKEESA
       . ..::..::: .::::: .  ...::.. .:::  .. .:   ::::::::...  .. 
NP_064 SPAQVMFQCLWKSCGKVLSTASAMQRHIRLVHLGRQAEPEQSDGEEDFYYTELDVGVDTL
           200       210       220       230       240       250   

           340       350       360       370       380       390   
pF1KB5 AAAAAAAAGTPVPGTPTSEPAPTPSMTGLPLSALPPPLHKAQSSGPEHPGPESSLPSGAL
       . . ..   :::  : .  ::  : .  ::   : ::   .    :  : :    :  .:
NP_064 TDGLSSL--TPVSPTASMPPA-FPRLE-LP-ELLEPPALPSPLRPPAPPLP----PPPVL
           260         270          280       290           300    

           400       410       420       430       440       450   
pF1KB5 SKSAPGSFWHIQADHAYQALPSFQIPVSPHIYTSVSWAAAPSAACSLSPVRSRSLSFSEP
       :  :  .  :  .:..::.                         : :.:.: .       
NP_064 STVANPQSCH--SDRVYQG-------------------------C-LTPARLEPQPTEVG
          310         320                                 330      

           460       470       480       490       500       510   
pF1KB5 QQPAPAMKSHLIVTSPPRAQSGARKARGEAKKCRKVYGIEHRDQWCTACRWKKACQRFLD
         : ::..:.. ::         :: ::.:::::::::.:.:: ::::::::::::::::
NP_064 ACP-PALSSRIGVT--------LRKPRGDAKKCRKVYGMERRDLWCTACRWKKACQRFLD
         340               350       360       370       380       




513 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 10:46:41 2016 done: Sat Nov  5 10:46:43 2016
 Total Scan time: 10.880 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]