FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5961, 515 aa
  1>>>pF1KB5961 515 - 515 aa - 515 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4794+/-0.000896; mu= 17.6910+/- 0.054
 mean_var=73.4503+/-14.545, 0's: 0 Z-trim(106.6): 60  B-trim: 33 in 1/49
 Lambda= 0.149650
 statistics sampled from 9004 (9064) to 9004 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.643), E-opt: 0.2 (0.278), width:  16
 Scan time:  2.910

The best scores are:                                      opt bits E(32554)
CCDS1895.1 GMCL1 gene_id:64395|Hs108|chr2          ( 515) 3463 757.1  1e-218
CCDS3245.2 KLHL6 gene_id:89857|Hs108|chr3          ( 621)  280 70.0 8.9e-12


>>CCDS1895.1 GMCL1 gene_id:64395|Hs108|chr2               (515 aa)
 initn: 3463 init1: 3463 opt: 3463  Z-score: 4040.1  bits: 757.1 E(32554): 1e-218
Smith-Waterman score: 3463; 100.0% identity (100.0% similar) in 515 aa overlap (1-515:1-515)

               10        20        30        40        50        60
pF1KB5 MGSLSSRVLRQPRPALAQQAQGARAGGSARRPDTGDDAAGHGFCYCAGSHKRKRSSGSFC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 MGSLSSRVLRQPRPALAQQAQGARAGGSARRPDTGDDAAGHGFCYCAGSHKRKRSSGSFC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 YCHPDSETDEDEEEGDEQQRLLNTPRRKKLKSTSKYIYQTLFLNGENSDIKICALGEEWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 YCHPDSETDEDEEEGDEQQRLLNTPRRKKLKSTSKYIYQTLFLNGENSDIKICALGEEWS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 LHKIYLCQSGYFSSMFSGSWKESSMNIIELEIPDQNIDVEALQVAFGSLYRDDVLIKPSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 LHKIYLCQSGYFSSMFSGSWKESSMNIIELEIPDQNIDVEALQVAFGSLYRDDVLIKPSR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 VVAILAAACLLQLDGLIQQCGETMKETVNVKTVCGYYTSAGTYGLDSVKKKCLEWLLNNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 VVAILAAACLLQLDGLIQQCGETMKETVNVKTVCGYYTSAGTYGLDSVKKKCLEWLLNNL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 MTHQNVELFKELSINVMKQLIGSSNLFVMQVEMDIYTALKKWMFLQLVPSWNGSLKQLLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 MTHQNVELFKELSINVMKQLIGSSNLFVMQVEMDIYTALKKWMFLQLVPSWNGSLKQLLT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 ETDVWFSKQRKDFEGMAFLETEQGKPFVSVFRHLRLQYIISDLASARIIEQDAVVPSEWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 ETDVWFSKQRKDFEGMAFLETEQGKPFVSVFRHLRLQYIISDLASARIIEQDAVVPSEWL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 SSVYKQQWFAMLRAEQDSEVGPQEINKEELEGNSMRCGRKLAKDGEYCWRWTGFNFGFDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 SSVYKQQWFAMLRAEQDSEVGPQEINKEELEGNSMRCGRKLAKDGEYCWRWTGFNFGFDL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 LVTYTNRYIIFKRNTLNQPCSGSVSLQPRRSIAFRLRLASFDSSGKLICSRTTGYQILTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 LVTYTNRYIIFKRNTLNQPCSGSVSLQPRRSIAFRLRLASFDSSGKLICSRTTGYQILTL
              430       440       450       460       470       480

              490       500       510     
pF1KB5 EKDQEQVVMNLDSRLLIFPLYICCNFLYISPEKKN
       :::::::::::::::::::::::::::::::::::
CCDS18 EKDQEQVVMNLDSRLLIFPLYICCNFLYISPEKKN
              490       500       510     

>>CCDS3245.2 KLHL6 gene_id:89857|Hs108|chr3               (621 aa)
 initn:  75 init1:  45 opt: 280  Z-score: 324.9  bits: 70.0 E(32554): 8.9e-12
Smith-Waterman score: 280; 25.8% identity (61.5% similar) in 221 aa overlap (68-283:28-243)

        40        50        60        70        80        90       
pF1KB5 AAGHGFCYCAGSHKRKRSSGSFCYCHPDSETDEDEEEGDEQQRLLNTPRRKKLKSTSKYI
                                     :::  ..  .  ..::  . :   .  . :
CCDS32    MLMAGQRGAWTMGDVVEKSLEGPLAPSTDEPSQKTGDLVEILNGEKVKFDDAGLSLI
                  10        20        30        40        50       

           100       110       120        130       140       150  
pF1KB5 YQ----TLFLNGENSDIKICALGEEWSLHKIYLCQ-SGYFSSMFSGSWKESSMNIIELEI
        :    :: ...  .:. .:.  .:.: :.. :   :.:: .:: .. ::.     : .:
CCDS32 LQNGLETLRMENALTDVILCVDIQEFSCHRVVLAAASNYFRAMFCNDLKEK----YEKRI
        60        70        80        90       100           110   

            160       170       180       190       200       210  
pF1KB5 PDQNIDVEALQVAFGSLYRDDVLIKPSRVVAILAAACLLQLDGLIQQCGETMKETVNVKT
         ...:.:.... .   : . .::  . :  .: :: :.:.  ... :.  . :..: ..
CCDS32 IIKGVDAETMHTLLDYTYTSKALITKQNVQRVLEAANLFQFLRMVDACASFLTEALNPEN
           120       130       140       150       160       170   

            220       230       240       250       260       270  
pF1KB5 VCGYYTSAGTYGLDSVKKKCLEWLLNNLMTHQNVELFKELSINVMKQLIGSSNLFVMQVE
         :    : :..:::.::.   ....:..   : : : .: ........ :..:.: . :
CCDS32 CVGILRLADTHSLDSLKKQVQSYIIQNFVQILNSEEFLDLPVDTLHHILKSDDLYVTE-E
           180       190       200       210       220       230   

            280       290       300       310       320       330  
pF1KB5 MDIYTALKKWMFLQLVPSWNGSLKQLLTETDVWFSKQRKDFEGMAFLETEQGKPFVSVFR
        ... .. .:.                                                 
CCDS32 AQVFETVMSWVRHKPSERLCLLPYVLENVRLPLLDPWYFVETVEADPLIRQCPEVFPLLQ
            240       250       260       270       280       290  




515 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:10:12 2016 done: Sat Nov  5 18:10:13 2016
 Total Scan time:  2.910 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]