FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5975, 519 aa
  1>>>pF1KB5975 519 - 519 aa - 519 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9662+/-0.00102; mu= 5.1993+/- 0.061
 mean_var=115.1898+/-22.682, 0's: 0 Z-trim(107.2): 53  B-trim: 0 in 0/50
 Lambda= 0.119500
 statistics sampled from 9373 (9413) to 9373 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.656), E-opt: 0.2 (0.289), width:  16
 Scan time:  3.410

The best scores are:                                      opt bits E(32554)
CCDS10246.1 BBS4 gene_id:585|Hs108|chr15           ( 519) 3382 594.2 1.1e-169
CCDS58377.1 BBS4 gene_id:585|Hs108|chr15           ( 347) 2249 398.9 4.9e-111


>>CCDS10246.1 BBS4 gene_id:585|Hs108|chr15                (519 aa)
 initn: 3382 init1: 3382 opt: 3382  Z-score: 3159.6  bits: 594.2 E(32554): 1.1e-169
Smith-Waterman score: 3382; 99.8% identity (99.8% similar) in 519 aa overlap (1-519:1-519)

               10        20        30        40        50        60
pF1KB5 MAEERVATRTQFPVSTESQKPRQKKAPEFPILEKQNWLIHLHYIRKDYEACKAVIKEQLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MAEERVATRTQFPVSTESQKPRQKKAPEFPILEKQNWLIHLHYIRKDYEACKAVIKEQLQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 ETQGLCEYAIYVQALIFRLEGNIQESLELFQTCAVLSPQSADNLKQVARSLFLLGKHKAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ETQGLCEYAIYVQALIFRLEGNIQESLELFQTCAVLSPQSADNLKQVARSLFLLGKHKAA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 IEVYNEAAKLNQKDWEISHNLGVCYIYLKQFNKAQDQLHNALNLNRHDLTYIMLGKIHLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 IEVYNEAAKLNQKDWEISHNLGVCYIYLKQFNKAQDQLHNALNLNRHDLTYIMLGKIHLL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 EGDLDKAIEVYKKAVEFSPENTELLTTLGLLYLQLGIYQKAFEHLGNALTYDPTNYKAIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EGDLDKAIEVYKKAVEFSPENTELLTTLGLLYLQLGIYQKAFEHLGNALTYDPTNYKAIL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 AAGSMMQTHGDFDVALTKYRVVACAVPESPPLWNNIGMCFFGKKKYVAAISCLKRANYLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AAGSMMQTHGDFDVALTKYRVVACAVPESPPLWNNIGMCFFGKKKYVAAISCLKRANYLA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 PFDWKILYNLGLVHLTMQQYASAFHFLSAAINFQPKMGELYMLLAVALTNLEDTENAKRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::
CCDS10 PFDWKILYNLGLVHLTMQQYASAFHFLSAAINFQPKMGELYMLLAVALTNLEDIENAKRA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 YAEAVHLDKCNPLVNLNYAVLLYNQGEKKNALAQYQEMEKKVSLLKDNSSLEFDSEMVEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 YAEAVHLDKCNPLVNLNYAVLLYNQGEKKNALAQYQEMEKKVSLLKDNSSLEFDSEMVEM
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 AQKLGAALQVGEALVWTKPVKDPKSKHQTTSTSKPASFQQPLGSNQALGQAMSSAAAYRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AQKLGAALQVGEALVWTKPVKDPKSKHQTTSTSKPASFQQPLGSNQALGQAMSSAAAYRT
              430       440       450       460       470       480

              490       500       510         
pF1KB5 LPSGAGGTSQFTKPPSLPLEPEPAVESSPTETSEQIREK
       :::::::::::::::::::::::::::::::::::::::
CCDS10 LPSGAGGTSQFTKPPSLPLEPEPAVESSPTETSEQIREK
              490       500       510         

>>CCDS58377.1 BBS4 gene_id:585|Hs108|chr15                (347 aa)
 initn: 2249 init1: 2249 opt: 2249  Z-score: 2106.9  bits: 398.9 E(32554): 4.9e-111
Smith-Waterman score: 2249; 99.7% identity (99.7% similar) in 347 aa overlap (173-519:1-347)

            150       160       170       180       190       200  
pF1KB5 VCYIYLKQFNKAQDQLHNALNLNRHDLTYIMLGKIHLLEGDLDKAIEVYKKAVEFSPENT
                                     ::::::::::::::::::::::::::::::
CCDS58                               MLGKIHLLEGDLDKAIEVYKKAVEFSPENT
                                             10        20        30

            210       220       230       240       250       260  
pF1KB5 ELLTTLGLLYLQLGIYQKAFEHLGNALTYDPTNYKAILAAGSMMQTHGDFDVALTKYRVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ELLTTLGLLYLQLGIYQKAFEHLGNALTYDPTNYKAILAAGSMMQTHGDFDVALTKYRVV
               40        50        60        70        80        90

            270       280       290       300       310       320  
pF1KB5 ACAVPESPPLWNNIGMCFFGKKKYVAAISCLKRANYLAPFDWKILYNLGLVHLTMQQYAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ACAVPESPPLWNNIGMCFFGKKKYVAAISCLKRANYLAPFDWKILYNLGLVHLTMQQYAS
              100       110       120       130       140       150

            330       340       350       360       370       380  
pF1KB5 AFHFLSAAINFQPKMGELYMLLAVALTNLEDTENAKRAYAEAVHLDKCNPLVNLNYAVLL
       ::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::
CCDS58 AFHFLSAAINFQPKMGELYMLLAVALTNLEDIENAKRAYAEAVHLDKCNPLVNLNYAVLL
              160       170       180       190       200       210

            390       400       410       420       430       440  
pF1KB5 YNQGEKKNALAQYQEMEKKVSLLKDNSSLEFDSEMVEMAQKLGAALQVGEALVWTKPVKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 YNQGEKKNALAQYQEMEKKVSLLKDNSSLEFDSEMVEMAQKLGAALQVGEALVWTKPVKD
              220       230       240       250       260       270

            450       460       470       480       490       500  
pF1KB5 PKSKHQTTSTSKPASFQQPLGSNQALGQAMSSAAAYRTLPSGAGGTSQFTKPPSLPLEPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 PKSKHQTTSTSKPASFQQPLGSNQALGQAMSSAAAYRTLPSGAGGTSQFTKPPSLPLEPE
              280       290       300       310       320       330

            510         
pF1KB5 PAVESSPTETSEQIREK
       :::::::::::::::::
CCDS58 PAVESSPTETSEQIREK
              340       




519 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:38:13 2016 done: Sat Nov  5 18:38:13 2016
 Total Scan time:  3.410 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]