Result of FASTA (ccds) for
pF1KB5980
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5980, 567 aa
1>>>pF1KB5980 567 - 567 aa - 567 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.6502+/-0.00082; mu= 5.4757+/- 0.049
mean_var=222.7281+/-49.046, 0's: 0 Z-trim(114.7): 85 B-trim: 237 in 1/53
Lambda= 0.085938
statistics sampled from 15209 (15297) to 15209 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.785), E-opt: 0.2 (0.47), width: 16
Scan time: 3.510
The best scores are: opt bits E(32554)
CCDS35441.1 SRPK3 gene_id:26576|Hs108|chrX ( 567) 3868 492.3 6.6e-139
CCDS55538.1 SRPK3 gene_id:26576|Hs108|chrX ( 566) 3849 489.9 3.4e-138
CCDS55537.1 SRPK3 gene_id:26576|Hs108|chrX ( 533) 2138 277.8 2.3e-74
CCDS5735.1 SRPK2 gene_id:6733|Hs108|chr7 ( 688) 1425 189.5 1.2e-47
CCDS34724.1 SRPK2 gene_id:6733|Hs108|chr7 ( 699) 1425 189.5 1.2e-47
CCDS47415.1 SRPK1 gene_id:6732|Hs108|chr6 ( 655) 1337 178.6 2.1e-44
>>CCDS35441.1 SRPK3 gene_id:26576|Hs108|chrX (567 aa)
initn: 3868 init1: 3868 opt: 3868 Z-score: 2607.3 bits: 492.3 E(32554): 6.6e-139
Smith-Waterman score: 3868; 100.0% identity (100.0% similar) in 567 aa overlap (1-567:1-567)
10 20 30 40 50 60
pF1KB5 MSASTGGGGDSGGSGGSSSSSQASCGPESSGSELALATPVPQMLQGLLGSDDEEQEDPKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MSASTGGGGDSGGSGGSSSSSQASCGPESSGSELALATPVPQMLQGLLGSDDEEQEDPKD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 YCKGGYHPVKIGDVFNGRYHVVRKLGWGHFSTVWLCWDIQRKRFVALKVVKSAGHYTETA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 YCKGGYHPVKIGDVFNGRYHVVRKLGWGHFSTVWLCWDIQRKRFVALKVVKSAGHYTETA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 VDEIKLLKCVRDSDPSDPKRETIVQLIDDFRISGVNGVHVCMVLEVLGHQLLKWIIKSNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 VDEIKLLKCVRDSDPSDPKRETIVQLIDDFRISGVNGVHVCMVLEVLGHQLLKWIIKSNY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 QGLPVPCVKSIVRQVLHGLDYLHTKCKIIHTDIKPENILLCVGDAYIRRLAAEATEWQQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 QGLPVPCVKSIVRQVLHGLDYLHTKCKIIHTDIKPENILLCVGDAYIRRLAAEATEWQQA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 GAPPPSRSIVSTAPQEVLQTGKLSKNKRKKMRRKRKQQKRLLEERLRDLQRLEAMEAATQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 GAPPPSRSIVSTAPQEVLQTGKLSKNKRKKMRRKRKQQKRLLEERLRDLQRLEAMEAATQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 AEDSGLRLDGGSGSTSSSGCHPGGARAGPSPASSSPAPGGGRSLSAGSQTSGFSGSLFSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 AEDSGLRLDGGSGSTSSSGCHPGGARAGPSPASSSPAPGGGRSLSAGSQTSGFSGSLFSP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 ASCSILSGSSNQRETGGLLSPSTPFGASNLLVNPLEPQNADKIKIKIADLGNACWVHKHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 ASCSILSGSSNQRETGGLLSPSTPFGASNLLVNPLEPQNADKIKIKIADLGNACWVHKHF
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 TEDIQTRQYRAVEVLIGAEYGPPADIWSTACMAFELATGDYLFEPHSGEDYSRDEDHIAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 TEDIQTRQYRAVEVLIGAEYGPPADIWSTACMAFELATGDYLFEPHSGEDYSRDEDHIAH
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 IVELLGDIPPAFALSGRYSREFFNRRGELRHIHNLKHWGLYEVLMEKYEWPLEQATQFSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 IVELLGDIPPAFALSGRYSREFFNRRGELRHIHNLKHWGLYEVLMEKYEWPLEQATQFSA
490 500 510 520 530 540
550 560
pF1KB5 FLLPMMEYIPEKRASAADCLQHPWLNP
:::::::::::::::::::::::::::
CCDS35 FLLPMMEYIPEKRASAADCLQHPWLNP
550 560
>>CCDS55538.1 SRPK3 gene_id:26576|Hs108|chrX (566 aa)
initn: 2113 init1: 2113 opt: 3849 Z-score: 2594.5 bits: 489.9 E(32554): 3.4e-138
Smith-Waterman score: 3849; 99.8% identity (99.8% similar) in 567 aa overlap (1-567:1-566)
10 20 30 40 50 60
pF1KB5 MSASTGGGGDSGGSGGSSSSSQASCGPESSGSELALATPVPQMLQGLLGSDDEEQEDPKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MSASTGGGGDSGGSGGSSSSSQASCGPESSGSELALATPVPQMLQGLLGSDDEEQEDPKD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 YCKGGYHPVKIGDVFNGRYHVVRKLGWGHFSTVWLCWDIQRKRFVALKVVKSAGHYTETA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 YCKGGYHPVKIGDVFNGRYHVVRKLGWGHFSTVWLCWDIQRKRFVALKVVKSAGHYTETA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 VDEIKLLKCVRDSDPSDPKRETIVQLIDDFRISGVNGVHVCMVLEVLGHQLLKWIIKSNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VDEIKLLKCVRDSDPSDPKRETIVQLIDDFRISGVNGVHVCMVLEVLGHQLLKWIIKSNY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 QGLPVPCVKSIVRQVLHGLDYLHTKCKIIHTDIKPENILLCVGDAYIRRLAAEATEWQQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QGLPVPCVKSIVRQVLHGLDYLHTKCKIIHTDIKPENILLCVGDAYIRRLAAEATEWQQA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 GAPPPSRSIVSTAPQEVLQTGKLSKNKRKKMRRKRKQQKRLLEERLRDLQRLEAMEAATQ
:::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
CCDS55 GAPPPSRSIVSTAPQEVL-TGKLSKNKRKKMRRKRKQQKRLLEERLRDLQRLEAMEAATQ
250 260 270 280 290
310 320 330 340 350 360
pF1KB5 AEDSGLRLDGGSGSTSSSGCHPGGARAGPSPASSSPAPGGGRSLSAGSQTSGFSGSLFSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 AEDSGLRLDGGSGSTSSSGCHPGGARAGPSPASSSPAPGGGRSLSAGSQTSGFSGSLFSP
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB5 ASCSILSGSSNQRETGGLLSPSTPFGASNLLVNPLEPQNADKIKIKIADLGNACWVHKHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ASCSILSGSSNQRETGGLLSPSTPFGASNLLVNPLEPQNADKIKIKIADLGNACWVHKHF
360 370 380 390 400 410
430 440 450 460 470 480
pF1KB5 TEDIQTRQYRAVEVLIGAEYGPPADIWSTACMAFELATGDYLFEPHSGEDYSRDEDHIAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TEDIQTRQYRAVEVLIGAEYGPPADIWSTACMAFELATGDYLFEPHSGEDYSRDEDHIAH
420 430 440 450 460 470
490 500 510 520 530 540
pF1KB5 IVELLGDIPPAFALSGRYSREFFNRRGELRHIHNLKHWGLYEVLMEKYEWPLEQATQFSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 IVELLGDIPPAFALSGRYSREFFNRRGELRHIHNLKHWGLYEVLMEKYEWPLEQATQFSA
480 490 500 510 520 530
550 560
pF1KB5 FLLPMMEYIPEKRASAADCLQHPWLNP
:::::::::::::::::::::::::::
CCDS55 FLLPMMEYIPEKRASAADCLQHPWLNP
540 550 560
>>CCDS55537.1 SRPK3 gene_id:26576|Hs108|chrX (533 aa)
initn: 3296 init1: 1799 opt: 2138 Z-score: 1448.4 bits: 277.8 E(32554): 2.3e-74
Smith-Waterman score: 3540; 94.0% identity (94.0% similar) in 567 aa overlap (1-567:1-533)
10 20 30 40 50 60
pF1KB5 MSASTGGGGDSGGSGGSSSSSQASCGPESSGSELALATPVPQMLQGLLGSDDEEQEDPKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MSASTGGGGDSGGSGGSSSSSQASCGPESSGSELALATPVPQMLQGLLGSDDEEQEDPKD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 YCKGGYHPVKIGDVFNGRYHVVRKLGWGHFSTVWLCWDIQRKRFVALKVVKSAGHYTETA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 YCKGGYHPVKIGDVFNGRYHVVRKLGWGHFSTVWLCWDIQRKRFVALKVVKSAGHYTETA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 VDEIKLLKCVRDSDPSDPKRETIVQLIDDFRISGVNGVHVCMVLEVLGHQLLKWIIKSNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VDEIKLLKCVRDSDPSDPKRETIVQLIDDFRISGVNGVHVCMVLEVLGHQLLKWIIKSNY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 QGLPVPCVKSIVRQVLHGLDYLHTKCKIIHTDIKPENILLCVGDAYIRRLAAEATEWQQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QGLPVPCVKSIVRQVLHGLDYLHTKCKIIHTDIKPENILLCVGDAYIRRLAAEATEWQQA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 GAPPPSRSIVSTAPQEVLQTGKLSKNKRKKMRRKRKQQKRLLEERLRDLQRLEAMEAATQ
:::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
CCDS55 GAPPPSRSIVSTAPQEVL-TGKLSKNKRKKMRRKRKQQKRLLEERLRDLQRLEAMEAATQ
250 260 270 280 290
310 320 330 340 350 360
pF1KB5 AEDSGLRLDGGSGSTSSSGCHPGGARAGPSPASSSPAPGGGRSLSAGSQTSGFSGSLFSP
::::::::::::::::::: ::::::::
CCDS55 AEDSGLRLDGGSGSTSSSG---------------------------------FSGSLFSP
300 310 320
370 380 390 400 410 420
pF1KB5 ASCSILSGSSNQRETGGLLSPSTPFGASNLLVNPLEPQNADKIKIKIADLGNACWVHKHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ASCSILSGSSNQRETGGLLSPSTPFGASNLLVNPLEPQNADKIKIKIADLGNACWVHKHF
330 340 350 360 370 380
430 440 450 460 470 480
pF1KB5 TEDIQTRQYRAVEVLIGAEYGPPADIWSTACMAFELATGDYLFEPHSGEDYSRDEDHIAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TEDIQTRQYRAVEVLIGAEYGPPADIWSTACMAFELATGDYLFEPHSGEDYSRDEDHIAH
390 400 410 420 430 440
490 500 510 520 530 540
pF1KB5 IVELLGDIPPAFALSGRYSREFFNRRGELRHIHNLKHWGLYEVLMEKYEWPLEQATQFSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 IVELLGDIPPAFALSGRYSREFFNRRGELRHIHNLKHWGLYEVLMEKYEWPLEQATQFSA
450 460 470 480 490 500
550 560
pF1KB5 FLLPMMEYIPEKRASAADCLQHPWLNP
:::::::::::::::::::::::::::
CCDS55 FLLPMMEYIPEKRASAADCLQHPWLNP
510 520 530
>>CCDS5735.1 SRPK2 gene_id:6733|Hs108|chr7 (688 aa)
initn: 2400 init1: 1299 opt: 1425 Z-score: 969.2 bits: 189.5 E(32554): 1.2e-47
Smith-Waterman score: 1867; 55.7% identity (68.2% similar) in 576 aa overlap (27-480:30-601)
10 20 30 40 50
pF1KB5 MSASTGGGGDSGGSGGSSSSSQASCGPESSGSELALATPVPQMLQGLLGSDDEEQED
: : :: :. . .::::::::::
CCDS57 MSVNSEKSSSSERPEPQQKAPLVPPPPPPPPPPPPPLPDPTP-PEPEEEILGSDDEEQED
10 20 30 40 50
60 70 80 90 100 110
pF1KB5 PKDYCKGGYHPVKIGDVFNGRYHVVRKLGWGHFSTVWLCWDIQRKRFVALKVVKSAGHYT
: ::::::::::::::.:::::::.::::::::::::::::.: :::::.:::::: :::
CCDS57 PADYCKGGYHPVKIGDLFNGRYHVIRKLGWGHFSTVWLCWDMQGKRFVAMKVVKSAQHYT
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB5 ETAVDEIKLLKCVRDSDPSDPKRETIVQLIDDFRISGVNGVHVCMVLEVLGHQLLKWIIK
:::.::::::::::.::::::... .:::::::.:::.::.:::::.:::::.:::::::
CCDS57 ETALDEIKLLKCVRESDPSDPNKDMVVQLIDDFKISGMNGIHVCMVFEVLGHHLLKWIIK
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB5 SNYQGLPVPCVKSIVRQVLHGLDYLHTKCKIIHTDIKPENILLCVGDAYIRRLAAEATEW
:::::::: :::::.::::.::::::.:::::::::::::::.:: :::.::.:::::::
CCDS57 SNYQGLPVRCVKSIIRQVLQGLDYLHSKCKIIHTDIKPENILMCVDDAYVRRMAAEATEW
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB5 QQAGAPPPSRSIVSTAPQEVLQTGKLSKNKRKKMRRKRKQQKRLLEERLRDLQRLE----
:.::::::: : ::::::. ::.::::.::...:.:.: .:::.::.....::
CCDS57 QKAGAPPPSGSAVSTAPQQK-PIGKISKNKKKKLKKKQKRQAELLEKRLQEIEELEREAE
240 250 260 270 280 290
300
pF1KB5 ------------------------------AMEAATQAE---DSG---------------
..: :..:: :.:
CCDS57 RKIIEENITSAAPSNDQDGEYCPEVKLKTTGLEEAAEAETAKDNGEAEDQEEKEDAEKEN
300 310 320 330 340 350
310 320 330
pF1KB5 LRLDGGSGSTSSSGCHP---------GGARAGP-----------SPASSSPAP-------
.. : . . .. : : . :: . . : :
CCDS57 IEKDEDDVDQELANIDPTWIESPKTNGHIENGPFSLEQQLDDEDDDEEDCPNPEEYNLDE
360 370 380 390 400 410
340 350 360 370
pF1KB5 ----------------GG----GRSLSAGSQTSGFSGSLFS----PASC-SILS-GS--S
.: :: :: :: :::: :..: :.:: :: .
CCDS57 PNAESDYTYSSSYEQFNGELPNGRHKIPESQFPEFSTSLFSGSLEPVACGSVLSEGSPLT
420 430 440 450 460 470
380 390 400 410
pF1KB5 NQRE---------------TGGLLSPSTPFGASNLLVNPLEPQNADKIKIKIADLGNACW
.:.: :: : :.. :..::::::.:.:::::..::::::::::
CCDS57 EQEESSPSHDRSRTVSASSTGDL--PKAKTRAADLLVNPLDPRNADKIRVKIADLGNACW
480 490 500 510 520 530
420 430 440 450 460 470
pF1KB5 VHKHFTEDIQTRQYRAVEVLIGAEYGPPADIWSTACMAFELATGDYLFEPHSGEDYSRDE
:::::::::::::::..:::::: :. :::::::::::::::::::::::::::::::::
CCDS57 VHKHFTEDIQTRQYRSIEVLIGAGYSTPADIWSTACMAFELATGDYLFEPHSGEDYSRDE
540 550 560 570 580 590
480 490 500 510 520 530
pF1KB5 DHIAHIVELLGDIPPAFALSGRYSREFFNRRGELRHIHNLKHWGLYEVLMEKYEWPLEQA
:::::
CCDS57 DHIAHIIELLGSIPRHFALSGKYSREFFNRRGELRHITKLKPWSLFDVLVEKYGWPHEDA
600 610 620 630 640 650
>>CCDS34724.1 SRPK2 gene_id:6733|Hs108|chr7 (699 aa)
initn: 2400 init1: 1299 opt: 1425 Z-score: 969.1 bits: 189.5 E(32554): 1.2e-47
Smith-Waterman score: 1867; 55.7% identity (68.2% similar) in 576 aa overlap (27-480:41-612)
10 20 30 40 50
pF1KB5 MSASTGGGGDSGGSGGSSSSSQASCGPESSGSELALATPVPQMLQGLLGSDDEEQE
: : :: :. . .:::::::::
CCDS34 ARKRRPKREKHPKKPEPQQKAPLVPPPPPPPPPPPPPLPDPTP-PEPEEEILGSDDEEQE
20 30 40 50 60
60 70 80 90 100 110
pF1KB5 DPKDYCKGGYHPVKIGDVFNGRYHVVRKLGWGHFSTVWLCWDIQRKRFVALKVVKSAGHY
:: ::::::::::::::.:::::::.::::::::::::::::.: :::::.:::::: ::
CCDS34 DPADYCKGGYHPVKIGDLFNGRYHVIRKLGWGHFSTVWLCWDMQGKRFVAMKVVKSAQHY
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB5 TETAVDEIKLLKCVRDSDPSDPKRETIVQLIDDFRISGVNGVHVCMVLEVLGHQLLKWII
::::.::::::::::.::::::... .:::::::.:::.::.:::::.:::::.::::::
CCDS34 TETALDEIKLLKCVRESDPSDPNKDMVVQLIDDFKISGMNGIHVCMVFEVLGHHLLKWII
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB5 KSNYQGLPVPCVKSIVRQVLHGLDYLHTKCKIIHTDIKPENILLCVGDAYIRRLAAEATE
::::::::: :::::.::::.::::::.:::::::::::::::.:: :::.::.::::::
CCDS34 KSNYQGLPVRCVKSIIRQVLQGLDYLHSKCKIIHTDIKPENILMCVDDAYVRRMAAEATE
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB5 WQQAGAPPPSRSIVSTAPQEVLQTGKLSKNKRKKMRRKRKQQKRLLEERLRDLQRLE---
::.::::::: : ::::::. ::.::::.::...:.:.: .:::.::.....::
CCDS34 WQKAGAPPPSGSAVSTAPQQK-PIGKISKNKKKKLKKKQKRQAELLEKRLQEIEELEREA
250 260 270 280 290 300
300
pF1KB5 -------------------------------AMEAATQAE---DSG--------------
..: :..:: :.:
CCDS34 ERKIIEENITSAAPSNDQDGEYCPEVKLKTTGLEEAAEAETAKDNGEAEDQEEKEDAEKE
310 320 330 340 350 360
310 320 330
pF1KB5 -LRLDGGSGSTSSSGCHP---------GGARAGP-----------SPASSSPAP------
.. : . . .. : : . :: . . : :
CCDS34 NIEKDEDDVDQELANIDPTWIESPKTNGHIENGPFSLEQQLDDEDDDEEDCPNPEEYNLD
370 380 390 400 410 420
340 350 360
pF1KB5 -----------------GG----GRSLSAGSQTSGFSGSLFS----PASC-SILS-GS--
.: :: :: :: :::: :..: :.:: ::
CCDS34 EPNAESDYTYSSSYEQFNGELPNGRHKIPESQFPEFSTSLFSGSLEPVACGSVLSEGSPL
430 440 450 460 470 480
370 380 390 400 410
pF1KB5 SNQRE---------------TGGLLSPSTPFGASNLLVNPLEPQNADKIKIKIADLGNAC
..:.: :: : :.. :..::::::.:.:::::..:::::::::
CCDS34 TEQEESSPSHDRSRTVSASSTGDL--PKAKTRAADLLVNPLDPRNADKIRVKIADLGNAC
490 500 510 520 530 540
420 430 440 450 460 470
pF1KB5 WVHKHFTEDIQTRQYRAVEVLIGAEYGPPADIWSTACMAFELATGDYLFEPHSGEDYSRD
::::::::::::::::..:::::: :. ::::::::::::::::::::::::::::::::
CCDS34 WVHKHFTEDIQTRQYRSIEVLIGAGYSTPADIWSTACMAFELATGDYLFEPHSGEDYSRD
550 560 570 580 590 600
480 490 500 510 520 530
pF1KB5 EDHIAHIVELLGDIPPAFALSGRYSREFFNRRGELRHIHNLKHWGLYEVLMEKYEWPLEQ
::::::
CCDS34 EDHIAHIIELLGSIPRHFALSGKYSREFFNRRGELRHITKLKPWSLFDVLVEKYGWPHED
610 620 630 640 650 660
>>CCDS47415.1 SRPK1 gene_id:6732|Hs108|chr6 (655 aa)
initn: 2207 init1: 1250 opt: 1337 Z-score: 910.5 bits: 178.6 E(32554): 2.1e-44
Smith-Waterman score: 1893; 53.3% identity (71.9% similar) in 580 aa overlap (21-512:22-600)
10 20 30 40 50
pF1KB5 MSASTGGGGDSGGSGGSSSSSQASCGPESSGSELALATPVPQMLQGLLGSDDEEQEDPK
.: . . :: . .:.. . .:::::.:::::.
CCDS47 MERKVLALQARKKRTKAKKDKAQRKSETQHRGSAPHSESDLPEQEEEILGSDDDEQEDPN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB5 DYCKGGYHPVKIGDVFNGRYHVVRKLGWGHFSTVWLCWDIQRKRFVALKVVKSAGHYTET
:::::::: :::::.:::::::.::::::::::::: :::: :.:::.:::::: :::::
CCDS47 DYCKGGYHLVKIGDLFNGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTET
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB5 AVDEIKLLKCVRDSDPSDPKRETIVQLIDDFRISGVNGVHVCMVLEVLGHQLLKWIIKSN
:.:::.::: ::.:::.::.:: .:::.:::.::::::.:.:::.:::::.:::::::::
CCDS47 ALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICMVFEVLGHHLLKWIIKSN
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB5 YQGLPVPCVKSIVRQVLHGLDYLHTKCKIIHTDIKPENILLCVGDAYIRRLAAEATEWQQ
:::::.::::.:..:::.:::::::::.::::::::::::: :.. :::::::::::::.
CCDS47 YQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRRLAAEATEWQR
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB5 AGAPPPSRSIVSTAPQEVLQTGKLSKNKRKKMRRKRKQQKRLLEERLRDLQRLEAM----
.:::::: : :::::: . :.::::.::...:.:.: .:::.:.......:
CCDS47 SGAPPPSGSAVSTAPQPK-PADKMSKNKKKKLKKKQKRQAELLEKRMQEIEEMEKESGPG
250 260 270 280 290
300 310 320
pF1KB5 --------------------------------EAATQAEDSGLR---LDGGSGSTSSSGC
:..: ..:. : .::.. . .:
CCDS47 QKRPNKQEESESPVERPLKENPPNKMTQEKLEESSTIGQDQTLMERDTEGGAAEINCNGV
300 310 320 330 340 350
330 340
pF1KB5 ---------------------HPGG---------------ARAGPSPASS---SPAPGGG
: .. .. : : .:. : .: .
CCDS47 IEVINYTQNSNNETLRHKEDLHNANDCDVQNLNQESSFLSSQNGDSSTSQETDSCTPITS
360 370 380 390 400 410
350 360 370 380 390
pF1KB5 R-SLSAGSQTSGFSGSLFSPASCSILSGS---------SNQRETGGLLSPSTPFGASNLL
. : . :.:. :. :: : :. : ...: .: :. . :.:.:
CCDS47 EVSDTMVCQSSSTVGQSFSEQHISQLQESIRAEIPCEDEQEQEHNGPLDNKGKSTAGNFL
420 430 440 450 460 470
400 410 420 430 440 450
pF1KB5 VNPLEPQNADKIKIKIADLGNACWVHKHFTEDIQTRQYRAVEVLIGAEYGPPADIWSTAC
::::::.::.:.:.:::::::::::::::::::::::::..:::::. :. :::::::::
CCDS47 VNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTAC
480 490 500 510 520 530
460 470 480 490 500 510
pF1KB5 MAFELATGDYLFEPHSGEDYSRDEDHIAHIVELLGDIPPAFALSGRYSREFFNRRGELRH
::::::::::::::::::.:.::::::: :.:::: .: . ..:.::.:::...:.:.:
CCDS47 MAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKH
540 550 560 570 580 590
520 530 540 550 560
pF1KB5 IHNLKHWGLYEVLMEKYEWPLEQATQFSAFLLPMMEYIPEKRASAADCLQHPWLNP
:
CCDS47 ITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPWLNS
600 610 620 630 640 650
567 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 01:58:28 2016 done: Sat Nov 5 01:58:29 2016
Total Scan time: 3.510 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]