Result of FASTA (ccds) for
pF1KB6004
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6004, 1978 aa
1>>>pF1KB6004 1978 - 1978 aa - 1978 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.8957+/-0.00123; mu= 15.5476+/- 0.075
mean_var=212.0634+/-42.589, 0's: 0 Z-trim(107.3): 72 B-trim: 15 in 2/53
Lambda= 0.088073
statistics sampled from 9442 (9488) to 9442 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.621), E-opt: 0.2 (0.291), width: 16
Scan time: 6.410
The best scores are: opt bits E(32554)
CCDS1917.1 ZNF638 gene_id:27332|Hs108|chr2 (1978) 12818 1643.6 0
>>CCDS1917.1 ZNF638 gene_id:27332|Hs108|chr2 (1978 aa)
initn: 12818 init1: 12818 opt: 12818 Z-score: 8809.9 bits: 1643.6 E(32554): 0
Smith-Waterman score: 12818; 100.0% identity (100.0% similar) in 1978 aa overlap (1-1978:1-1978)
10 20 30 40 50 60
pF1KB6 MSRPRFNPRGDFPLQRPRAPNPSGMRPPGPFMRPGSMGLPRFYPAGRARGIPHRFAGHES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 MSRPRFNPRGDFPLQRPRAPNPSGMRPPGPFMRPGSMGLPRFYPAGRARGIPHRFAGHES
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YQNMGPQRMNVQVTQHRTDPRLTKEKLDFHEAQQKKGKPHGSRWDDEPHISASVAVKQSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 YQNMGPQRMNVQVTQHRTDPRLTKEKLDFHEAQQKKGKPHGSRWDDEPHISASVAVKQSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 VTQVTEQSPKVQSRYTKESASSILASFGLSNEDLEELSRYPDEQLTPENMPLILRDIRMR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 VTQVTEQSPKVQSRYTKESASSILASFGLSNEDLEELSRYPDEQLTPENMPLILRDIRMR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 KMGRRLPNLPSQSRNKETLGSEAVSSNVIDYGHASKYGYTEDPLEVRIYDPEIPTDEVEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 KMGRRLPNLPSQSRNKETLGSEAVSSNVIDYGHASKYGYTEDPLEVRIYDPEIPTDEVEN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 EFQSQQNISASVPNPNVICNSMFPVEDVFRQMDFPGESSNNRSFFSVESGTKMSGLHISG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 EFQSQQNISASVPNPNVICNSMFPVEDVFRQMDFPGESSNNRSFFSVESGTKMSGLHISG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 GQSVLEPIKSVNQSINQTVSQTMSQSLIPPSMNQQPFSSELISSVSQQERIPHEPVINSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 GQSVLEPIKSVNQSINQTVSQTMSQSLIPPSMNQQPFSSELISSVSQQERIPHEPVINSS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 NVHVGSRGSKKNYQSQADIPIRSPFGIVKASWLPKFSHADAQKMKRLPTPSMMNDYYAAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 NVHVGSRGSKKNYQSQADIPIRSPFGIVKASWLPKFSHADAQKMKRLPTPSMMNDYYAAS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB6 PRIFPHLCSLCNVECSHLKDWIQHQNTSTHIESCRQLRQQYPDWNPEILPSRRNEGNRKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 PRIFPHLCSLCNVECSHLKDWIQHQNTSTHIESCRQLRQQYPDWNPEILPSRRNEGNRKE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB6 NETPRRRSHSPSPRRSRRSSSSHRFRRSRSPMHYMYRPRSRSPRICHRFISRYRSRSRSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 NETPRRRSHSPSPRRSRRSSSSHRFRRSRSPMHYMYRPRSRSPRICHRFISRYRSRSRSR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB6 SPYRIRNPFRGSPKCFRSVSPERMSRRSVRSSDRKKALEDVVQRSGHGTEFNKQKHLEAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 SPYRIRNPFRGSPKCFRSVSPERMSRRSVRSSDRKKALEDVVQRSGHGTEFNKQKHLEAA
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB6 DKGHSPAQKPKTSSGTKPSVKPTSATKSDSNLGGHSIRCKSKNLEDDTLSECKQVSDKAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 DKGHSPAQKPKTSSGTKPSVKPTSATKSDSNLGGHSIRCKSKNLEDDTLSECKQVSDKAV
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB6 SLQRKLRKEQSLHYGSVLLITELPEDGCTEEDVRKLFQPFGKVNDVLIVPYRKEAYLEME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 SLQRKLRKEQSLHYGSVLLITELPEDGCTEEDVRKLFQPFGKVNDVLIVPYRKEAYLEME
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB6 FKEAITAIMKYIETTPLTIKGKSVKICVPGKKKAQNKEVKKKTLESKKVSASTLKRDADA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 FKEAITAIMKYIETTPLTIKGKSVKICVPGKKKAQNKEVKKKTLESKKVSASTLKRDADA
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB6 SKAVEIVTSTSAAKTGQAKASVAKVNKSTGKSASSVKSVVTVAVKGNKASIKTAKSGGKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 SKAVEIVTSTSAAKTGQAKASVAKVNKSTGKSASSVKSVVTVAVKGNKASIKTAKSGGKK
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB6 SLEAKKTGNVKNKDSNKPVTIPENSEIKTSIEVKATENCAKEAISDAALEATENEPLNKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 SLEAKKTGNVKNKDSNKPVTIPENSEIKTSIEVKATENCAKEAISDAALEATENEPLNKE
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB6 TEEMCVMLVSNLPNKGYSVEEVYDLAKPFGGLKDILILSSHKKAYIEINRKAAESMVKFY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 TEEMCVMLVSNLPNKGYSVEEVYDLAKPFGGLKDILILSSHKKAYIEINRKAAESMVKFY
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KB6 TCFPVLMDGNQLSISMAPENMNIKDEEAIFITLVKENDPEANIDTIYDRFVHLDNLPEDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 TCFPVLMDGNQLSISMAPENMNIKDEEAIFITLVKENDPEANIDTIYDRFVHLDNLPEDG
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KB6 LQCVLCVGLQFGKVDHHVFISNRNKAILQLDSPESAQSMYSFLKQNPQNIGDHMLTCSLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 LQCVLCVGLQFGKVDHHVFISNRNKAILQLDSPESAQSMYSFLKQNPQNIGDHMLTCSLS
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KB6 PKIDLPEVQIEHDPELEKESPGLKNSPIDESEVQTATDSPSVKPNELEEESTPSIQTETL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 PKIDLPEVQIEHDPELEKESPGLKNSPIDESEVQTATDSPSVKPNELEEESTPSIQTETL
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KB6 VQQEEPCEEEAEKATCDSDFAVETLELETQGEEVKEEIPLVASASVSIEQFTENAEECAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 VQQEEPCEEEAEKATCDSDFAVETLELETQGEEVKEEIPLVASASVSIEQFTENAEECAL
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KB6 NQQMFNSDLEKKGAEIINPKTALLPSDSVFAEERNLKGILEESPSEAEDFISGITQTMVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 NQQMFNSDLEKKGAEIINPKTALLPSDSVFAEERNLKGILEESPSEAEDFISGITQTMVE
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KB6 AVAEVEKNETVSEILPSTCIVTLVPGIPTGDEKTVDKKNISEKKGNMDEKEEKEFNTKET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 AVAEVEKNETVSEILPSTCIVTLVPGIPTGDEKTVDKKNISEKKGNMDEKEEKEFNTKET
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KB6 RMDLQIGTEKAEKNEGRMDAEKVEKMAAMKEKPAENTLFKAYPNKGVGQANKPDETSKTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 RMDLQIGTEKAEKNEGRMDAEKVEKMAAMKEKPAENTLFKAYPNKGVGQANKPDETSKTS
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KB6 ILAVSDVSSSKPSIKAVIVSSPKAKATVSKTENQKSFPKSVPRDQINAEKKLSAKEFGLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 ILAVSDVSSSKPSIKAVIVSSPKAKATVSKTENQKSFPKSVPRDQINAEKKLSAKEFGLL
1390 1400 1410 1420 1430 1440
1450 1460 1470 1480 1490 1500
pF1KB6 KPTSARSGLAESSSKFKPTQSSLTRGGSGRISALQGKLSKLDYRDITKQSQETEARPSIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 KPTSARSGLAESSSKFKPTQSSLTRGGSGRISALQGKLSKLDYRDITKQSQETEARPSIM
1450 1460 1470 1480 1490 1500
1510 1520 1530 1540 1550 1560
pF1KB6 KRDDSNNKTLAEQNTKNPKSTTGRSSKSKEEPLFPFNLDEFVTVDEVIEEVNPSQAKQNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 KRDDSNNKTLAEQNTKNPKSTTGRSSKSKEEPLFPFNLDEFVTVDEVIEEVNPSQAKQNP
1510 1520 1530 1540 1550 1560
1570 1580 1590 1600 1610 1620
pF1KB6 LKGKRKETLKNVPFSELNLKKKKGKTSTPRGVEGELSFVTLDEIGEEEDAAAHLAQALVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 LKGKRKETLKNVPFSELNLKKKKGKTSTPRGVEGELSFVTLDEIGEEEDAAAHLAQALVT
1570 1580 1590 1600 1610 1620
1630 1640 1650 1660 1670 1680
pF1KB6 VDEVIDEEELNMEEMVKNSNSLFTLDELIDQDDCISHSEPKDVTVLSVAEEQDLLKQERL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 VDEVIDEEELNMEEMVKNSNSLFTLDELIDQDDCISHSEPKDVTVLSVAEEQDLLKQERL
1630 1640 1650 1660 1670 1680
1690 1700 1710 1720 1730 1740
pF1KB6 VTVDEIGEVEELPLNESADITFATLNTKGNEGDTVRDSIGFISSQVPEDPSTLVTVDEIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 VTVDEIGEVEELPLNESADITFATLNTKGNEGDTVRDSIGFISSQVPEDPSTLVTVDEIQ
1690 1700 1710 1720 1730 1740
1750 1760 1770 1780 1790 1800
pF1KB6 DDSSDLHLVTLDEVTEEDEDSLADFNNLKEELNFVTVDEVGEEEDGDNDLKVELAQSKND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 DDSSDLHLVTLDEVTEEDEDSLADFNNLKEELNFVTVDEVGEEEDGDNDLKVELAQSKND
1750 1760 1770 1780 1790 1800
1810 1820 1830 1840 1850 1860
pF1KB6 HPTDKKGNRKKRAVDTKKTKLESLSQVGPVNENVMEEDLKTMIERHLTAKTPTKRVRIGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 HPTDKKGNRKKRAVDTKKTKLESLSQVGPVNENVMEEDLKTMIERHLTAKTPTKRVRIGK
1810 1820 1830 1840 1850 1860
1870 1880 1890 1900 1910 1920
pF1KB6 TLPSEKAVVTEPAKGEEAFQMSEVDEESGLKDSEPERKRKKTEDSSSGKSVASDVPEELD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 TLPSEKAVVTEPAKGEEAFQMSEVDEESGLKDSEPERKRKKTEDSSSGKSVASDVPEELD
1870 1880 1890 1900 1910 1920
1930 1940 1950 1960 1970
pF1KB6 FLVPKAGFFCPICSLFYSGEKAMTNHCKSTRHKQNTEKFMAKQRKEKEQNEAEERSSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 FLVPKAGFFCPICSLFYSGEKAMTNHCKSTRHKQNTEKFMAKQRKEKEQNEAEERSSR
1930 1940 1950 1960 1970
1978 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 23:06:32 2016 done: Wed Nov 2 23:06:33 2016
Total Scan time: 6.410 Total Display time: 0.170
Function used was FASTA [36.3.4 Apr, 2011]