FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6103, 577 aa
  1>>>pF1KB6103 577 - 577 aa - 577 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6682+/-0.00115; mu= 7.1836+/- 0.069
 mean_var=104.4713+/-20.577, 0's: 0 Z-trim(104.1): 33  B-trim: 0 in 0/50
 Lambda= 0.125480
 statistics sampled from 7713 (7719) to 7713 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.594), E-opt: 0.2 (0.237), width:  16
 Scan time:  2.480

The best scores are:                                      opt bits E(32554)
CCDS2334.1 ORC2 gene_id:4999|Hs108|chr2            ( 577) 3717 684.0 1.3e-196


>>CCDS2334.1 ORC2 gene_id:4999|Hs108|chr2                 (577 aa)
 initn: 3717 init1: 3717 opt: 3717  Z-score: 3643.1  bits: 684.0 E(32554): 1.3e-196
Smith-Waterman score: 3717; 100.0% identity (100.0% similar) in 577 aa overlap (1-577:1-577)

               10        20        30        40        50        60
pF1KB6 MSKPELKEDKMLEVHFVGDDDVLNHILDREGGAKLKKERAQLLVNPKKIIKKPEYDLEED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 MSKPELKEDKMLEVHFVGDDDVLNHILDREGGAKLKKERAQLLVNPKKIIKKPEYDLEED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 DQEVLKDQNYVEIMGRDVQESLKNGSATGGGNKVYSFQNRKHSEKMAKLASELAKTPQKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 DQEVLKDQNYVEIMGRDVQESLKNGSATGGGNKVYSFQNRKHSEKMAKLASELAKTPQKS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 VSFSLKNDPEITINVPQSSKGHSASDKVQPKNNDKSEFLSTAPRSLRKRLIVPRSHSDSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 VSFSLKNDPEITINVPQSSKGHSASDKVQPKNNDKSEFLSTAPRSLRKRLIVPRSHSDSE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 SEYSASNSEDDEGVAQEHEEDTNAVIFSQKIQAQNRVVSAPVGKETPSKRMKRDKTSDLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 SEYSASNSEDDEGVAQEHEEDTNAVIFSQKIQAQNRVVSAPVGKETPSKRMKRDKTSDLV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 EEYFEAHSSSKVLTSDRTLQKLKRAKLDQQTLRNLLSKVSPSFSAELKQLNQQYEKLFHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 EEYFEAHSSSKVLTSDRTLQKLKRAKLDQQTLRNLLSKVSPSFSAELKQLNQQYEKLFHK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 WMLQLHLGFNIVLYGLGSKRDLLERFRTTMLQDSIHVVINGFFPGISVKSVLNSITEEVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 WMLQLHLGFNIVLYGLGSKRDLLERFRTTMLQDSIHVVINGFFPGISVKSVLNSITEEVL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 DHMGTFRSILDQLDWIVNKFKEDSSLELFLLIHNLDSQMLRGEKSQQIIGQLSSLHNIYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 DHMGTFRSILDQLDWIVNKFKEDSSLELFLLIHNLDSQMLRGEKSQQIIGQLSSLHNIYL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB6 IASIDHLNAPLMWDHAKQSLFNWLWYETTTYSPYTEETSYENSLLVKQSGSLPLSSLTHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 IASIDHLNAPLMWDHAKQSLFNWLWYETTTYSPYTEETSYENSLLVKQSGSLPLSSLTHV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB6 LRSLTPNARGIFRLLIKYQLDNQDNPSYIGLSFQDFYQQCREAFLVNSDLTLRAQLTEFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 LRSLTPNARGIFRLLIKYQLDNQDNPSYIGLSFQDFYQQCREAFLVNSDLTLRAQLTEFR
              490       500       510       520       530       540

              550       560       570       
pF1KB6 DHKLIRTKKGTDGVEYLLIPVDNGTLTDFLEKEEEEA
       :::::::::::::::::::::::::::::::::::::
CCDS23 DHKLIRTKKGTDGVEYLLIPVDNGTLTDFLEKEEEEA
              550       560       570       




577 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 08:14:20 2016 done: Sat Nov  5 08:14:21 2016
 Total Scan time:  2.480 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]