Result of FASTA (ccds) for
pF1KB6118
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6118, 546 aa
1>>>pF1KB6118 546 - 546 aa - 546 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.5440+/-0.000766; mu= 4.8860+/- 0.046
mean_var=182.5034+/-36.895, 0's: 0 Z-trim(115.4): 16 B-trim: 0 in 0/52
Lambda= 0.094938
statistics sampled from 15945 (15955) to 15945 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.809), E-opt: 0.2 (0.49), width: 16
Scan time: 4.170
The best scores are: opt bits E(32554)
CCDS55900.1 FAM124A gene_id:220108|Hs108|chr13 ( 546) 3816 534.7 1.1e-151
CCDS9427.1 FAM124A gene_id:220108|Hs108|chr13 ( 582) 3588 503.5 2.9e-142
CCDS81767.1 FAM124A gene_id:220108|Hs108|chr13 ( 301) 1945 278.2 9.3e-75
CCDS46527.1 FAM124B gene_id:79843|Hs108|chr2 ( 455) 761 116.2 8.6e-26
CCDS2461.1 FAM124B gene_id:79843|Hs108|chr2 ( 272) 753 114.9 1.2e-25
>>CCDS55900.1 FAM124A gene_id:220108|Hs108|chr13 (546 aa)
initn: 3816 init1: 3816 opt: 3816 Z-score: 2836.8 bits: 534.7 E(32554): 1.1e-151
Smith-Waterman score: 3816; 100.0% identity (100.0% similar) in 546 aa overlap (1-546:1-546)
10 20 30 40 50 60
pF1KB6 MDPKAGGGGEEDDCVDSGAETGGSDYSHLSSTSSELSVEEAQDPFLVSIHIIADPGESQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MDPKAGGGGEEDDCVDSGAETGGSDYSHLSSTSSELSVEEAQDPFLVSIHIIADPGESQP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LQEAIDNVLAWIHPDLPLFRVSERRASRRRRKPPKGAQPALAVVLFLQEEYGEEQILQLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LQEAIDNVLAWIHPDLPLFRVSERRASRRRRKPPKGAQPALAVVLFLQEEYGEEQILQLH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 RTLQQPPWRHHHTEQVHGRFLPYLPCSQDFFTLAPGTPLWAIRPVHYGKEIVRFTVYCRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RTLQQPPWRHHHTEQVHGRFLPYLPCSQDFFTLAPGTPLWAIRPVHYGKEIVRFTVYCRY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 DNYADSLRFYQLILRRSPSQKKADFCIFPIFSNLDVDIQFSLKRLPCDQCPVPTDSSVLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DNYADSLRFYQLILRRSPSQKKADFCIFPIFSNLDVDIQFSLKRLPCDQCPVPTDSSVLE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 FRVRDIGELVPLLPNPCSPISEGRWQTEDHDGNKILLQAQRVHKKFPKPGRVHHASEKKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 FRVRDIGELVPLLPNPCSPISEGRWQTEDHDGNKILLQAQRVHKKFPKPGRVHHASEKKR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 HSTPLPSTAVPSHTPGSSQQSPLNSPHPGPIRTGLPPGHQQEFAGRANSTPNPPWSFQRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 HSTPLPSTAVPSHTPGSSQQSPLNSPHPGPIRTGLPPGHQQEFAGRANSTPNPPWSFQRS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 KSLFCLPTGGPSLASSAEPQWFSNTGAPGHRASEWRHGHLLSIDDLEGAQETDVDTGLRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KSLFCLPTGGPSLASSAEPQWFSNTGAPGHRASEWRHGHLLSIDDLEGAQETDVDTGLRL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB6 SSSDLSVVSAYSAPSRFCSTVETPLPSERCSSHWAAHKDSREGPLPTVSRVTTEASWASL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SSSDLSVVSAYSAPSRFCSTVETPLPSERCSSHWAAHKDSREGPLPTVSRVTTEASWASL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB6 PFFTKRSSSSSATARAAPPAPSTSTLTDSSPQLPCDTPKVKQTDGDMPPPPGSAGPGDND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PFFTKRSSSSSATARAAPPAPSTSTLTDSSPQLPCDTPKVKQTDGDMPPPPGSAGPGDND
490 500 510 520 530 540
pF1KB6 MEEFYI
::::::
CCDS55 MEEFYI
>>CCDS9427.1 FAM124A gene_id:220108|Hs108|chr13 (582 aa)
initn: 3588 init1: 3588 opt: 3588 Z-score: 2667.6 bits: 503.5 E(32554): 2.9e-142
Smith-Waterman score: 3699; 93.6% identity (93.8% similar) in 578 aa overlap (5-546:5-582)
10 20 30
pF1KB6 MDPKAGGGGEEDDCVDSGAETGGSDYSHLSSTSS--------------------------
:::::::::::::::::::::::::::::.
CCDS94 MDPKAGGGGEEDDCVDSGAETGGSDYSHLSSTSNGFSTWRMPCCLFLYCTHGDKEKGRWS
10 20 30 40 50 60
40 50 60 70 80
pF1KB6 ----------ELSVEEAQDPFLVSIHIIADPGESQPLQEAIDNVLAWIHPDLPLFRVSER
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 LQVEHTWPSGELSVEEAQDPFLVSIHIIADPGESQPLQEAIDNVLAWIHPDLPLFRVSER
70 80 90 100 110 120
90 100 110 120 130 140
pF1KB6 RASRRRRKPPKGAQPALAVVLFLQEEYGEEQILQLHRTLQQPPWRHHHTEQVHGRFLPYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 RASRRRRKPPKGAQPALAVVLFLQEEYGEEQILQLHRTLQQPPWRHHHTEQVHGRFLPYL
130 140 150 160 170 180
150 160 170 180 190 200
pF1KB6 PCSQDFFTLAPGTPLWAIRPVHYGKEIVRFTVYCRYDNYADSLRFYQLILRRSPSQKKAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 PCSQDFFTLAPGTPLWAIRPVHYGKEIVRFTVYCRYDNYADSLRFYQLILRRSPSQKKAD
190 200 210 220 230 240
210 220 230 240 250 260
pF1KB6 FCIFPIFSNLDVDIQFSLKRLPCDQCPVPTDSSVLEFRVRDIGELVPLLPNPCSPISEGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 FCIFPIFSNLDVDIQFSLKRLPCDQCPVPTDSSVLEFRVRDIGELVPLLPNPCSPISEGR
250 260 270 280 290 300
270 280 290 300 310 320
pF1KB6 WQTEDHDGNKILLQAQRVHKKFPKPGRVHHASEKKRHSTPLPSTAVPSHTPGSSQQSPLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 WQTEDHDGNKILLQAQRVHKKFPKPGRVHHASEKKRHSTPLPSTAVPSHTPGSSQQSPLN
310 320 330 340 350 360
330 340 350 360 370 380
pF1KB6 SPHPGPIRTGLPPGHQQEFAGRANSTPNPPWSFQRSKSLFCLPTGGPSLASSAEPQWFSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 SPHPGPIRTGLPPGHQQEFAGRANSTPNPPWSFQRSKSLFCLPTGGPSLASSAEPQWFSN
370 380 390 400 410 420
390 400 410 420 430 440
pF1KB6 TGAPGHRASEWRHGHLLSIDDLEGAQETDVDTGLRLSSSDLSVVSAYSAPSRFCSTVETP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 TGAPGHRASEWRHGHLLSIDDLEGAQETDVDTGLRLSSSDLSVVSAYSAPSRFCSTVETP
430 440 450 460 470 480
450 460 470 480 490 500
pF1KB6 LPSERCSSHWAAHKDSREGPLPTVSRVTTEASWASLPFFTKRSSSSSATARAAPPAPSTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 LPSERCSSHWAAHKDSREGPLPTVSRVTTEASWASLPFFTKRSSSSSATARAAPPAPSTS
490 500 510 520 530 540
510 520 530 540
pF1KB6 TLTDSSPQLPCDTPKVKQTDGDMPPPPGSAGPGDNDMEEFYI
::::::::::::::::::::::::::::::::::::::::::
CCDS94 TLTDSSPQLPCDTPKVKQTDGDMPPPPGSAGPGDNDMEEFYI
550 560 570 580
>>CCDS81767.1 FAM124A gene_id:220108|Hs108|chr13 (301 aa)
initn: 1945 init1: 1945 opt: 1945 Z-score: 1455.6 bits: 278.2 E(32554): 9.3e-75
Smith-Waterman score: 1945; 100.0% identity (100.0% similar) in 278 aa overlap (1-278:1-278)
10 20 30 40 50 60
pF1KB6 MDPKAGGGGEEDDCVDSGAETGGSDYSHLSSTSSELSVEEAQDPFLVSIHIIADPGESQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MDPKAGGGGEEDDCVDSGAETGGSDYSHLSSTSSELSVEEAQDPFLVSIHIIADPGESQP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LQEAIDNVLAWIHPDLPLFRVSERRASRRRRKPPKGAQPALAVVLFLQEEYGEEQILQLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LQEAIDNVLAWIHPDLPLFRVSERRASRRRRKPPKGAQPALAVVLFLQEEYGEEQILQLH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 RTLQQPPWRHHHTEQVHGRFLPYLPCSQDFFTLAPGTPLWAIRPVHYGKEIVRFTVYCRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 RTLQQPPWRHHHTEQVHGRFLPYLPCSQDFFTLAPGTPLWAIRPVHYGKEIVRFTVYCRY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 DNYADSLRFYQLILRRSPSQKKADFCIFPIFSNLDVDIQFSLKRLPCDQCPVPTDSSVLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 DNYADSLRFYQLILRRSPSQKKADFCIFPIFSNLDVDIQFSLKRLPCDQCPVPTDSSVLE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 FRVRDIGELVPLLPNPCSPISEGRWQTEDHDGNKILLQAQRVHKKFPKPGRVHHASEKKR
::::::::::::::::::::::::::::::::::::::
CCDS81 FRVRDIGELVPLLPNPCSPISEGRWQTEDHDGNKILLQVLGGRLSVCLGDLRNQLALPQT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 HSTPLPSTAVPSHTPGSSQQSPLNSPHPGPIRTGLPPGHQQEFAGRANSTPNPPWSFQRS
CCDS81 L
>>CCDS46527.1 FAM124B gene_id:79843|Hs108|chr2 (455 aa)
initn: 822 init1: 652 opt: 761 Z-score: 576.5 bits: 116.2 E(32554): 8.6e-26
Smith-Waterman score: 779; 34.5% identity (64.1% similar) in 443 aa overlap (38-466:1-419)
10 20 30 40 50 60
pF1KB6 GGEEDDCVDSGAETGGSDYSHLSSTSSELSVEEAQDPFLVSIHIIADPGESQPLQEAIDN
..:.: :. ...:..:. :... ::...:.
CCDS46 MDETQGPLAMTVHLLANSGHGSLLQRTLDQ
10 20 30
70 80 90 100 110 120
pF1KB6 VLAWIHPDLPLFRVSERRASRR---RRKPPKGAQPALAVVLFLQEEYGEEQILQLHRTLQ
.: : :.. ::.:::: . . . . .. :...:.:::.: ::...... .::
CCDS46 LLDCICPEVRLFQVSERASPVKYCEKSHSKRSRFPGMSVLLFLHESPGEDRLFRVLDSLQ
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 QPPWRHHHTEQVHGRFLPYLPCSQDFFTLAPGTPLWAIRPVHYGKEIVRFTVYCRYDNYA
. ::. . :....::. ::. .:.:..: :.:..: :: :.::.: :.:: .:::
CCDS46 HSPWQCYPTQDTRGRLCPYFFANQEFYSLDSQLPIWGVRQVHCGSEILRVTLYCSFDNYE
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB6 DSLRFYQLILRRSPSQKKADFCIFPIFSNLDVDIQFSLKRLPCDQCPVPTDSSVLEFRVR
:..:.:..::.: . .:..::.: .... . .:.:::.:: . : .::::.:.:.
CCDS46 DAIRLYEMILQREATLQKSNFCFFVLYASKSFALQLSLKQLPPGMSVDPKESSVLQFKVQ
160 170 180 190 200 210
250 260 270 280 290
pF1KB6 DIGELVPLLPNPCSPISEGRWQTEDHDGNKILLQAQR-----VHKKFPKPGRVHHASEKK
.::.::::::::: ::: ::::.:.::::::::.: :.. . : . .:.
CCDS46 EIGQLVPLLPNPCMPISSTRWQTQDYDGNKILLQVQLNPELGVKNGILGAGMLPLGSRLT
220 230 240 250 260 270
300 310 320 330 340 350
pF1KB6 RHSTPLPSTAVPSHTPGS-SQQSPLNSPHPGPIRTGLPPGHQQEFAGRANSTPNPPWSFQ
:. : ... :. :: :. :.: .: : . .. :: .: .: :::
CCDS46 SVSAKRTSEPRSQRNQGKRSQGHSLELPEP----SGSPTS--DRCAG--TSWKSPGRSFQ
280 290 300 310 320
360 370 380 390 400 410
pF1KB6 RSKSLFCLPTGGPSLASSAEPQWFSNTGAPGHRASEWRHGHLLSIDDLEGAQETDVDTGL
:. :. : : : :. : : . . . :.. ::. ::.:::::
CCDS46 VSS-----PAMGAHLHLS------SHHLESGARMKVLNREN--SFQKLEA--ETNVDTGL
330 340 350 360
420 430 440 450 460 470
pF1KB6 RLSSSDLSVVSAYSAPSRFCSTVETPLPSERCSSHWAAHKDS-----REGPLPTVSRVTT
. .:. . ... : .: . :. : :. :.. : .:::
CCDS46 TIINSE-PRQTYFGGFPRDLQTSQPPFCLPASSLGVATSKNNSVLKERVSPLPLAGQRDL
370 380 390 400 410 420
480 490 500 510 520 530
pF1KB6 EASWASLPFFTKRSSSSSATARAAPPAPSTSTLTDSSPQLPCDTPKVKQTDGDMPPPPGS
CCDS46 GTRKTISECLLHLQVQGEEKEEDEEEFFI
430 440 450
>>CCDS2461.1 FAM124B gene_id:79843|Hs108|chr2 (272 aa)
initn: 756 init1: 645 opt: 753 Z-score: 573.9 bits: 114.9 E(32554): 1.2e-25
Smith-Waterman score: 753; 40.6% identity (74.9% similar) in 271 aa overlap (38-302:1-269)
10 20 30 40 50 60
pF1KB6 GGEEDDCVDSGAETGGSDYSHLSSTSSELSVEEAQDPFLVSIHIIADPGESQPLQEAIDN
..:.: :. ...:..:. :... ::...:.
CCDS24 MDETQGPLAMTVHLLANSGHGSLLQRTLDQ
10 20 30
70 80 90 100 110 120
pF1KB6 VLAWIHPDLPLFRVSERRASRR---RRKPPKGAQPALAVVLFLQEEYGEEQILQLHRTLQ
.: : :.. ::.:::: . . . . .. :...:.:::.: ::...... .::
CCDS24 LLDCICPEVRLFQVSERASPVKYCEKSHSKRSRFPGMSVLLFLHESPGEDRLFRVLDSLQ
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 QPPWRHHHTEQVHGRFLPYLPCSQDFFTLAPGTPLWAIRPVHYGKEIVRFTVYCRYDNYA
. ::. . :....::. ::. .:.:..: :.:..: :: :.::.: :.:: .:::
CCDS24 HSPWQCYPTQDTRGRLCPYFFANQEFYSLDSQLPIWGVRQVHCGSEILRVTLYCSFDNYE
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB6 DSLRFYQLILRRSPSQKKADFCIFPIFSNLDVDIQFSLKRLPCDQCPVPTDSSVLEFRVR
:..:.:..::.: . .:..::.: .... . .:.:::.:: . : .::::.:.:.
CCDS24 DAIRLYEMILQREATLQKSNFCFFVLYASKSFALQLSLKQLPPGMSVDPKESSVLQFKVQ
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB6 DIGELVPLLPNPCSPISEGRWQTEDHDGNKILLQAQRVHKKFPKPGRV---HHASEKKRH
.::.::::::::: ::: ::::.:.:::::::: : ... :: ::.: ..
CCDS24 EIGQLVPLLPNPCMPISSTRWQTQDYDGNKILLQ--RWESSSVAQTRVRWCHHSSLRSSP
220 230 240 250 260
310 320 330 340 350 360
pF1KB6 STPLPSTAVPSHTPGSSQQSPLNSPHPGPIRTGLPPGHQQEFAGRANSTPNPPWSFQRSK
:
CCDS24 SGFK
270
546 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 10:56:03 2016 done: Sat Nov 5 10:56:04 2016
Total Scan time: 4.170 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]