Result of FASTA (ccds) for
pF1KB6123
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6123, 586 aa
1>>>pF1KB6123 586 - 586 aa - 586 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5994+/-0.000881; mu= 17.3353+/- 0.053
mean_var=69.7745+/-13.775, 0's: 0 Z-trim(106.4): 18 B-trim: 0 in 0/51
Lambda= 0.153542
statistics sampled from 8943 (8950) to 8943 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.656), E-opt: 0.2 (0.275), width: 16
Scan time: 3.380
The best scores are: opt bits E(32554)
CCDS9112.1 CRY1 gene_id:1407|Hs108|chr12 ( 586) 4079 912.9 0
CCDS7915.2 CRY2 gene_id:1408|Hs108|chr11 ( 614) 2978 669.0 4.7e-192
CCDS44576.1 CRY2 gene_id:1408|Hs108|chr11 ( 532) 2690 605.2 6.7e-173
>>CCDS9112.1 CRY1 gene_id:1407|Hs108|chr12 (586 aa)
initn: 4079 init1: 4079 opt: 4079 Z-score: 4879.8 bits: 912.9 E(32554): 0
Smith-Waterman score: 4079; 100.0% identity (100.0% similar) in 586 aa overlap (1-586:1-586)
10 20 30 40 50 60
pF1KB6 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 DLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 DLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 GVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVIEKCTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 GVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVIEKCTT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 PLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFERPRMN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 PLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFERPRMN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 ANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQLLWREFFYTAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 ANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQLLWREFFYTAA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 TNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 TNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 VACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 VACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB6 RTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 RTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLN
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB6 IERMKQIYQQLSRYRGLGLLASVPSNPNGNGGFMGYSAENIPGCSSSGSCSQGSGILHYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 IERMKQIYQQLSRYRGLGLLASVPSNPNGNGGFMGYSAENIPGCSSSGSCSQGSGILHYA
490 500 510 520 530 540
550 560 570 580
pF1KB6 HGDSQQTHLLKQGRSSMGTGLSGGKRPSQEEDTQSIGPKVQRQSTN
::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 HGDSQQTHLLKQGRSSMGTGLSGGKRPSQEEDTQSIGPKVQRQSTN
550 560 570 580
>>CCDS7915.2 CRY2 gene_id:1408|Hs108|chr11 (614 aa)
initn: 2976 init1: 2976 opt: 2978 Z-score: 3561.4 bits: 669.0 E(32554): 4.7e-192
Smith-Waterman score: 2978; 74.8% identity (89.3% similar) in 563 aa overlap (4-566:44-600)
10 20 30
pF1KB6 MGVNAVHWFRKGLRLHDNPALKECIQGADTIRC
..:::::::::::::::: ..:: .::
CCDS79 VAGAVWTVMAATVATAAAVAPAPAPGTDSASSVHWFRKGLRLHDNPALLAAVRGARCVRC
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB6 VYILDPWFAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNI
:::::::::.::.::::::::::: :::::..::::::::::.:::::::::::::::..
CCDS79 VYILDPWFAASSSVGINRWRFLLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGV
80 90 100 110 120 130
100 110 120 130 140 150
pF1KB6 TKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRF
:.:..::::::::::::::: :.: ::::::... ::::::::.:::::: .::::::::
CCDS79 TRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRF
140 150 160 170 180 190
160 170 180 190 200 210
pF1KB6 QTLISKMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGG
:..::.:: . :: .::. .:.: . ....::: ::::::::::: :.::. ::: ::
CCDS79 QAIISRMELPKKPVGLVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGG
200 210 220 230 240 250
220 230 240 250 260 270
pF1KB6 ETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLY
:::::.::..::::::::::.::::::::::::::::::::::::::::::::..: :::
CCDS79 ETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLY
260 270 280 290 300 310
280 290 300 310 320 330
pF1KB6 KKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEG
::::.::.:::::.::::::::::::::::::::.:::::::.:::::.:::::::::::
CCDS79 KKVKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEG
320 330 340 350 360 370
340 350 360 370 380 390
pF1KB6 RTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSIN
.:::::::::::::::::::::::::::::::::::::.::: :..::.:::::::.:.:
CCDS79 KTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVN
380 390 400 410 420 430
400 410 420 430 440 450
pF1KB6 AGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEG
::::::::::.::::::::::::::::::::.::::::::: :..::..:::.::::::.
CCDS79 AGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPES
440 450 460 470 480 490
460 470 480 490 500 510
pF1KB6 IQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGLGLLASVPSNPNGNGGF
:::.:::.:::.::.:.:::::.::::::::::::::::::::: ::::::: . .
CCDS79 IQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRGLCLLASVPSCVED---L
500 510 520 530 540 550
520 530 540 550 560 570
pF1KB6 MGYSAENIPGCSSSGSCSQGSGILHYAHGDSQQTHLLKQGRSSMGTGLSGGKRPSQEEDT
:: :. :..:: :. .: : .. . :. .. : :: :
CCDS79 SHPVAE--PSSSQAGSMSS-AGPRPLPSGPASPKRKLEAAEEPPGEELSKRARVAELPTP
560 570 580 590 600
580
pF1KB6 QSIGPKVQRQSTN
CCDS79 ELPSKDA
610
>>CCDS44576.1 CRY2 gene_id:1408|Hs108|chr11 (532 aa)
initn: 2685 init1: 2685 opt: 2690 Z-score: 3217.6 bits: 605.2 E(32554): 6.7e-173
Smith-Waterman score: 2690; 74.2% identity (89.5% similar) in 515 aa overlap (52-566:11-518)
30 40 50 60 70 80
pF1KB6 KECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPA
: :::: :::::..::::::::::.:::::
CCDS44 MPAPPGRTHTW-FLLQSLEDLDTSLRKLNSRLFVVRGQPA
10 20 30
90 100 110 120 130 140
pF1KB6 DVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIEL
::::::::::..:.:..::::::::::::::: :.: ::::::... ::::::::.::::
CCDS44 DVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIEL
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB6 NGGQPPLTYKRFQTLISKMEPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFD
:: .:::::::::..::.:: . :: .::. .:.: . ....::: :::::::::::
CCDS44 NGQKPPLTYKRFQAIISRMELPKKPVGLVTSQQMESCRAEIQENHDETYGVPSLEELGFP
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB6 TDGLSSAVWPGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLS
:.::. ::: :::::::.::..::::::::::.:::::::::::::::::::::::::::
CCDS44 TEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLS
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB6 CRLFYFKLTDLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWD
:::::..: :::::::.::.:::::.::::::::::::::::::::.:::::::.:::::
CCDS44 CRLFYYRLWDLYKKVKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWD
220 230 240 250 260 270
330 340 350 360 370 380
pF1KB6 KNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVF
.:::::::::::.:::::::::::::::::::::::::::::::::::::.::: :..::
CCDS44 RNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVF
280 290 300 310 320 330
390 400 410 420 430 440
pF1KB6 EELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPA
.:::::::.:.:::::::::::.::::::::::::::::::::.::::::::: :..::.
CCDS44 DELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPS
340 350 360 370 380 390
450 460 470 480 490 500
pF1KB6 KYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGLGLLA
.:::.::::::.:::.:::.:::.::.:.:::::.::::::::::::::::::::: :::
CCDS44 RYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQLSRYRGLCLLA
400 410 420 430 440 450
510 520 530 540 550 560
pF1KB6 SVPSNPNGNGGFMGYSAENIPGCSSSGSCSQGSGILHYAHGDSQQTHLLKQGRSSMGTGL
:::: . ... . . :. :..:: :. .: : .. . :. .. : :
CCDS44 SVPSCVED----LSHPVAE-PSSSQAGSMSS-AGPRPLPSGPASPKRKLEAAEEPPGEEL
460 470 480 490 500 510
570 580
pF1KB6 SGGKRPSQEEDTQSIGPKVQRQSTN
: :
CCDS44 SKRARVAELPTPELPSKDA
520 530
586 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 10:58:04 2016 done: Sat Nov 5 10:58:04 2016
Total Scan time: 3.380 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]