FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6157, 598 aa
  1>>>pF1KB6157 598 - 598 aa - 598 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6148+/-0.00092; mu= 12.8212+/- 0.056
 mean_var=83.8862+/-16.767, 0's: 0 Z-trim(107.0): 13  B-trim: 119 in 1/50
 Lambda= 0.140033
 statistics sampled from 9315 (9320) to 9315 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.286), width:  16
 Scan time:  3.360

The best scores are:                                      opt bits E(32554)
CCDS8098.1 POLA2 gene_id:23649|Hs108|chr11         ( 598) 3925 802.9       0


>>CCDS8098.1 POLA2 gene_id:23649|Hs108|chr11              (598 aa)
 initn: 3925 init1: 3925 opt: 3925  Z-score: 4285.0  bits: 802.9 E(32554):    0
Smith-Waterman score: 3925; 99.8% identity (99.8% similar) in 598 aa overlap (1-598:1-598)

               10        20        30        40        50        60
pF1KB6 MSASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 MSASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ILNSFEHEFLSKRLSKARHSTCKDSGHAGARDIVSIQELIEVEEEEEILLNSYTTPSKGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 ILNSFEHEFLSKRLSKARHSTCKDSGHAGARDIVSIQELIEVEEEEEILLNSYTTPSKGS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 QKRAISTPETPLTKRSVSTRSPHQLLSPSSFSPSATPSQKYNSRSNRGEVVTSFGLAQGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 QKRAISTPETPLTKRSVSTRSPHQLLSPSSFSPSATPSQKYNSRSNRGEVVTSFGLAQGV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 SWSGRGGAGNISLKVLGCPEALTGSYKSMFQKLPDIREVLTCKIEELGSELKEHYKIEAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 SWSGRGGAGNISLKVLGCPEALTGSYKSMFQKLPDIREVLTCKIEELGSELKEHYKIEAF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 TPLLAPAQEPVTLLGQIGCDSNGKLNNKSVILEGDREHSSGAQIPVDLSELKEYSLFPGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 TPLLAPAQEPVTLLGQIGCDSNGKLNNKSVILEGDREHSSGAQIPVDLSELKEYSLFPGQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 VVIMEGINTTGRKLVATKLYEGVPLPFYQPTEEDADFEQSMVLVACGPYTTSDSITYDPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 VVIMEGINTTGRKLVATKLYEGVPLPFYQPTEEDADFEQSMVLVACGPYTTSDSITYDPL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 LDLIAVINHDRPDVCILFGPFLDAKHEQVENCLLTSPFEDIFKQCLRTIIEGTRSSGSHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 LDLIAVINHDRPDVCILFGPFLDAKHEQVENCLLTSPFEDIFKQCLRTIIEGTRSSGSHL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB6 VFVPSLRDVHHEPVYPQPPFSYSDLSREDKKQVQFVSEPCSLSINGVIFGLTSTDLLFHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 VFVPSLRDVHHEPVYPQPPFSYSDLSREDKKQVQFVSEPCSLSINGVIFGLTSTDLLFHL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB6 GAEEISSSSGTSDRFSRILKHILTQRSYYPLYPPQEDMAIDYESFYVYAQLPVTPDVLII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 GAEEISSSSGTSDRFSRILKHILTQRSYYPLYPPQEDMAIDYESFYVYAQLPVTPDVLII
              490       500       510       520       530       540

              550       560       570       580       590        
pF1KB6 PSELRYFVKDVLGCVCVNPGRLTKGQVGGTFARLYLRRPAADRAERQSPCIAVQVVRI
       :::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
CCDS80 PSELRYFVKDVLGCVCVNPGRLTKGQVGGTFARLYLRRPAADGAERQSPCIAVQVVRI
              550       560       570       580       590        




598 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 21:58:49 2016 done: Fri Nov  4 21:58:49 2016
 Total Scan time:  3.360 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]