Result of FASTA (omim) for
pF1KB6161
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6161, 599 aa
1>>>pF1KB6161 599 - 599 aa - 599 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0042+/-0.000487; mu= 15.9228+/- 0.030
mean_var=98.8974+/-19.749, 0's: 0 Z-trim(110.8): 203 B-trim: 200 in 1/51
Lambda= 0.128968
statistics sampled from 18969 (19215) to 18969 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.578), E-opt: 0.2 (0.225), width: 16
Scan time: 9.220
The best scores are: opt bits E(85289)
NP_001035809 (OMIM: 601213) ATP-binding cassette s ( 599) 3971 750.2 4.6e-216
NP_002931 (OMIM: 601213) ATP-binding cassette sub- ( 599) 3971 750.2 4.6e-216
XP_016867188 (OMIM: 167800,211400,219700,277180,60 (1399) 199 48.6 0.00016
XP_011514056 (OMIM: 167800,211400,219700,277180,60 (1399) 199 48.6 0.00016
XP_011514055 (OMIM: 167800,211400,219700,277180,60 (1399) 199 48.6 0.00016
NP_000483 (OMIM: 167800,211400,219700,277180,60242 (1480) 199 48.6 0.00017
XP_011514053 (OMIM: 167800,211400,219700,277180,60 (1510) 199 48.7 0.00017
XP_011541254 (OMIM: 607784) PREDICTED: ATP-binding ( 582) 192 47.0 0.00021
XP_016873610 (OMIM: 607784) PREDICTED: ATP-binding ( 585) 192 47.0 0.00021
NP_071452 (OMIM: 607784) ATP-binding cassette sub- ( 646) 192 47.1 0.00022
NP_001135977 (OMIM: 607784) ATP-binding cassette s ( 646) 192 47.1 0.00022
XP_006717059 (OMIM: 600047) PREDICTED: ATP-binding (2435) 196 48.3 0.00037
NP_001597 (OMIM: 600047) ATP-binding cassette sub- (2436) 196 48.3 0.00037
NP_997698 (OMIM: 600047) ATP-binding cassette sub- (2466) 196 48.3 0.00037
NP_061142 (OMIM: 612503) ATP-binding cassette sub- (1642) 190 47.0 0.00059
NP_758424 (OMIM: 612503) ATP-binding cassette sub- (1642) 190 47.0 0.00059
XP_011528109 (OMIM: 603076) PREDICTED: ATP-binding ( 641) 183 45.4 0.00071
NP_997511 (OMIM: 603076) ATP-binding cassette sub- ( 644) 183 45.4 0.00071
NP_997512 (OMIM: 603076) ATP-binding cassette sub- ( 663) 183 45.4 0.00072
NP_058198 (OMIM: 603076) ATP-binding cassette sub- ( 666) 183 45.4 0.00073
NP_997510 (OMIM: 603076) ATP-binding cassette sub- ( 668) 183 45.4 0.00073
NP_997057 (OMIM: 603076) ATP-binding cassette sub- ( 677) 183 45.4 0.00074
NP_004906 (OMIM: 603076) ATP-binding cassette sub- ( 678) 183 45.4 0.00074
XP_011528108 (OMIM: 603076) PREDICTED: ATP-binding ( 689) 183 45.4 0.00075
NP_001278951 (OMIM: 170260,604571) antigen peptide ( 547) 175 43.9 0.0018
NP_000584 (OMIM: 170260,604571) antigen peptide tr ( 808) 175 44.0 0.0024
NP_001288759 (OMIM: 605250) multidrug resistance-a ( 784) 174 43.8 0.0026
XP_016875811 (OMIM: 605250) PREDICTED: multidrug r ( 816) 174 43.8 0.0027
XP_016875809 (OMIM: 605250) PREDICTED: multidrug r ( 830) 174 43.8 0.0028
NP_001098985 (OMIM: 605250) multidrug resistance-a ( 859) 174 43.8 0.0028
NP_001288758 (OMIM: 605250) multidrug resistance-a (1278) 174 43.9 0.0038
XP_005254082 (OMIM: 605250) PREDICTED: multidrug r (1282) 174 44.0 0.0039
XP_016875808 (OMIM: 605250) PREDICTED: multidrug r (1282) 174 44.0 0.0039
NP_005836 (OMIM: 605250) multidrug resistance-asso (1325) 174 44.0 0.004
XP_016878732 (OMIM: 158343) PREDICTED: multidrug r ( 931) 166 42.4 0.0084
>>NP_001035809 (OMIM: 601213) ATP-binding cassette sub-f (599 aa)
initn: 3971 init1: 3971 opt: 3971 Z-score: 4000.1 bits: 750.2 E(85289): 4.6e-216
Smith-Waterman score: 3971; 100.0% identity (100.0% similar) in 599 aa overlap (1-599:1-599)
10 20 30 40 50 60
pF1KB6 MADKLTRIAIVNHDKCKPKKCRQECKKSCPVVRMGKLCIEVTPQSKIAWISETLCIGCGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MADKLTRIAIVNHDKCKPKKCRQECKKSCPVVRMGKLCIEVTPQSKIAWISETLCIGCGI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 CIKKCPFGALSIVNLPSNLEKETTHRYCANAFKLHRLPIPRPGEVLGLVGTNGIGKSTAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CIKKCPFGALSIVNLPSNLEKETTHRYCANAFKLHRLPIPRPGEVLGLVGTNGIGKSTAL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 KILAGKQKPNLGKYDDPPDWQEILTYFRGSELQNYFTKILEDDLKAIIKPQYVDQIPKAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KILAGKQKPNLGKYDDPPDWQEILTYFRGSELQNYFTKILEDDLKAIIKPQYVDQIPKAA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 KGTVGSILDRKDETKTQAIVCQQLDLTHLKERNVEDLSGGELQRFACAVVCIQKADIFMF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KGTVGSILDRKDETKTQAIVCQQLDLTHLKERNVEDLSGGELQRFACAVVCIQKADIFMF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 DEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 MPFSVREGINIFLDGYVPTENLRFRDASLVFKVAETANEEEVKKMCMYKYPGMKKKMGEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPFSVREGINIFLDGYVPTENLRFRDASLVFKVAETANEEEVKKMCMYKYPGMKKKMGEF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 ELAIVAGEFTDSEIMVMLGENGTGKTTFIRMLAGRLKPDEGGEVPVLNVSYKPQKISPKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELAIVAGEFTDSEIMVMLGENGTGKTTFIRMLAGRLKPDEGGEVPVLNVSYKPQKISPKS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB6 TGSVRQLLHEKIRDAYTHPQFVTDVMKPLQIENIIDQEVQTLSGGELQRVALALCLGKPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TGSVRQLLHEKIRDAYTHPQFVTDVMKPLQIENIIDQEVQTLSGGELQRVALALCLGKPA
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB6 DVYLIDEPSAYLDSEQRLMAARVVKRFILHAKKTAFVVEHDFIMATYLADRVIVFDGVPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVYLIDEPSAYLDSEQRLMAARVVKRFILHAKKTAFVVEHDFIMATYLADRVIVFDGVPS
490 500 510 520 530 540
550 560 570 580 590
pF1KB6 KNTVANSPQTLLAGMNKFLSQLEITFRRDPNNYRPRINKLNSIKDVEQKKSGNYFFLDD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KNTVANSPQTLLAGMNKFLSQLEITFRRDPNNYRPRINKLNSIKDVEQKKSGNYFFLDD
550 560 570 580 590
>>NP_002931 (OMIM: 601213) ATP-binding cassette sub-fami (599 aa)
initn: 3971 init1: 3971 opt: 3971 Z-score: 4000.1 bits: 750.2 E(85289): 4.6e-216
Smith-Waterman score: 3971; 100.0% identity (100.0% similar) in 599 aa overlap (1-599:1-599)
10 20 30 40 50 60
pF1KB6 MADKLTRIAIVNHDKCKPKKCRQECKKSCPVVRMGKLCIEVTPQSKIAWISETLCIGCGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MADKLTRIAIVNHDKCKPKKCRQECKKSCPVVRMGKLCIEVTPQSKIAWISETLCIGCGI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 CIKKCPFGALSIVNLPSNLEKETTHRYCANAFKLHRLPIPRPGEVLGLVGTNGIGKSTAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 CIKKCPFGALSIVNLPSNLEKETTHRYCANAFKLHRLPIPRPGEVLGLVGTNGIGKSTAL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 KILAGKQKPNLGKYDDPPDWQEILTYFRGSELQNYFTKILEDDLKAIIKPQYVDQIPKAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 KILAGKQKPNLGKYDDPPDWQEILTYFRGSELQNYFTKILEDDLKAIIKPQYVDQIPKAA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 KGTVGSILDRKDETKTQAIVCQQLDLTHLKERNVEDLSGGELQRFACAVVCIQKADIFMF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 KGTVGSILDRKDETKTQAIVCQQLDLTHLKERNVEDLSGGELQRFACAVVCIQKADIFMF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 DEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 DEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 MPFSVREGINIFLDGYVPTENLRFRDASLVFKVAETANEEEVKKMCMYKYPGMKKKMGEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MPFSVREGINIFLDGYVPTENLRFRDASLVFKVAETANEEEVKKMCMYKYPGMKKKMGEF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 ELAIVAGEFTDSEIMVMLGENGTGKTTFIRMLAGRLKPDEGGEVPVLNVSYKPQKISPKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 ELAIVAGEFTDSEIMVMLGENGTGKTTFIRMLAGRLKPDEGGEVPVLNVSYKPQKISPKS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB6 TGSVRQLLHEKIRDAYTHPQFVTDVMKPLQIENIIDQEVQTLSGGELQRVALALCLGKPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TGSVRQLLHEKIRDAYTHPQFVTDVMKPLQIENIIDQEVQTLSGGELQRVALALCLGKPA
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB6 DVYLIDEPSAYLDSEQRLMAARVVKRFILHAKKTAFVVEHDFIMATYLADRVIVFDGVPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 DVYLIDEPSAYLDSEQRLMAARVVKRFILHAKKTAFVVEHDFIMATYLADRVIVFDGVPS
490 500 510 520 530 540
550 560 570 580 590
pF1KB6 KNTVANSPQTLLAGMNKFLSQLEITFRRDPNNYRPRINKLNSIKDVEQKKSGNYFFLDD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 KNTVANSPQTLLAGMNKFLSQLEITFRRDPNNYRPRINKLNSIKDVEQKKSGNYFFLDD
550 560 570 580 590
>>XP_016867188 (OMIM: 167800,211400,219700,277180,602421 (1399 aa)
initn: 114 init1: 114 opt: 199 Z-score: 202.0 bits: 48.6 E(85289): 0.00016
Smith-Waterman score: 199; 28.3% identity (59.5% similar) in 173 aa overlap (373-535:371-538)
350 360 370 380 390 400
pF1KB6 KKMCMYKYPGMKKKMGEFELAIVAGEFTDSEIMVMLGENGTGKTTFIRMLAGRLKPDEGG
..... : .:.:::... .. :.:.:.::
XP_016 SNGDDSLFFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMVIMGELEPSEGK
350 360 370 380 390 400
410 420 430 440 450
pF1KB6 EVPVLNVSYKPQKISPKSTGSVRQLL-------HEKIRDAYTHPQFVTDVMKPLQIENII
.:. : .: :.... . . . :.. :. :. : . .::.
XP_016 IKHSGRISFCSQ-FSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIV
410 420 430 440 450
460 470 480 490 500 510
pF1KB6 DQEVQ-TLSGGELQRVALALCLGKPADVYLIDEPSAYLD--SEQRLMAARVVKRFILHAK
: :::::. :..:: . : ::.::.: : .::: .:.... . : : : :.
XP_016 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK---LMAN
460 470 480 490 500 510
520 530 540 550 560 570
pF1KB6 KTAFVVEHDFIMATYLADRVIVFDGVPSKNTVANSPQTLLAGMNKFLSQLEITFRRDPNN
:: ..: . ::.....
XP_016 KTRILVTSK-MEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMGCDSFDQFSAE
520 530 540 550 560 570
>>XP_011514056 (OMIM: 167800,211400,219700,277180,602421 (1399 aa)
initn: 114 init1: 114 opt: 199 Z-score: 202.0 bits: 48.6 E(85289): 0.00016
Smith-Waterman score: 199; 28.3% identity (59.5% similar) in 173 aa overlap (373-535:371-538)
350 360 370 380 390 400
pF1KB6 KKMCMYKYPGMKKKMGEFELAIVAGEFTDSEIMVMLGENGTGKTTFIRMLAGRLKPDEGG
..... : .:.:::... .. :.:.:.::
XP_011 SNGDDSLFFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMVIMGELEPSEGK
350 360 370 380 390 400
410 420 430 440 450
pF1KB6 EVPVLNVSYKPQKISPKSTGSVRQLL-------HEKIRDAYTHPQFVTDVMKPLQIENII
.:. : .: :.... . . . :.. :. :. : . .::.
XP_011 IKHSGRISFCSQ-FSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIV
410 420 430 440 450
460 470 480 490 500 510
pF1KB6 DQEVQ-TLSGGELQRVALALCLGKPADVYLIDEPSAYLD--SEQRLMAARVVKRFILHAK
: :::::. :..:: . : ::.::.: : .::: .:.... . : : : :.
XP_011 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK---LMAN
460 470 480 490 500 510
520 530 540 550 560 570
pF1KB6 KTAFVVEHDFIMATYLADRVIVFDGVPSKNTVANSPQTLLAGMNKFLSQLEITFRRDPNN
:: ..: . ::.....
XP_011 KTRILVTSK-MEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMGCDSFDQFSAE
520 530 540 550 560 570
>>XP_011514055 (OMIM: 167800,211400,219700,277180,602421 (1399 aa)
initn: 114 init1: 114 opt: 199 Z-score: 202.0 bits: 48.6 E(85289): 0.00016
Smith-Waterman score: 199; 28.3% identity (59.5% similar) in 173 aa overlap (373-535:371-538)
350 360 370 380 390 400
pF1KB6 KKMCMYKYPGMKKKMGEFELAIVAGEFTDSEIMVMLGENGTGKTTFIRMLAGRLKPDEGG
..... : .:.:::... .. :.:.:.::
XP_011 SNGDDSLFFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMVIMGELEPSEGK
350 360 370 380 390 400
410 420 430 440 450
pF1KB6 EVPVLNVSYKPQKISPKSTGSVRQLL-------HEKIRDAYTHPQFVTDVMKPLQIENII
.:. : .: :.... . . . :.. :. :. : . .::.
XP_011 IKHSGRISFCSQ-FSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIV
410 420 430 440 450
460 470 480 490 500 510
pF1KB6 DQEVQ-TLSGGELQRVALALCLGKPADVYLIDEPSAYLD--SEQRLMAARVVKRFILHAK
: :::::. :..:: . : ::.::.: : .::: .:.... . : : : :.
XP_011 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK---LMAN
460 470 480 490 500 510
520 530 540 550 560 570
pF1KB6 KTAFVVEHDFIMATYLADRVIVFDGVPSKNTVANSPQTLLAGMNKFLSQLEITFRRDPNN
:: ..: . ::.....
XP_011 KTRILVTSK-MEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMGCDSFDQFSAE
520 530 540 550 560 570
>>NP_000483 (OMIM: 167800,211400,219700,277180,602421) c (1480 aa)
initn: 114 init1: 114 opt: 199 Z-score: 201.6 bits: 48.6 E(85289): 0.00017
Smith-Waterman score: 199; 28.3% identity (59.5% similar) in 173 aa overlap (373-535:452-619)
350 360 370 380 390 400
pF1KB6 KKMCMYKYPGMKKKMGEFELAIVAGEFTDSEIMVMLGENGTGKTTFIRMLAGRLKPDEGG
..... : .:.:::... .. :.:.:.::
NP_000 SNGDDSLFFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMVIMGELEPSEGK
430 440 450 460 470 480
410 420 430 440 450
pF1KB6 EVPVLNVSYKPQKISPKSTGSVRQLL-------HEKIRDAYTHPQFVTDVMKPLQIENII
.:. : .: :.... . . . :.. :. :. : . .::.
NP_000 IKHSGRISFCSQ-FSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIV
490 500 510 520 530 540
460 470 480 490 500 510
pF1KB6 DQEVQ-TLSGGELQRVALALCLGKPADVYLIDEPSAYLD--SEQRLMAARVVKRFILHAK
: :::::. :..:: . : ::.::.: : .::: .:.... . : : : :.
NP_000 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK---LMAN
550 560 570 580 590
520 530 540 550 560 570
pF1KB6 KTAFVVEHDFIMATYLADRVIVFDGVPSKNTVANSPQTLLAGMNKFLSQLEITFRRDPNN
:: ..: . ::.....
NP_000 KTRILVTSK-MEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMGCDSFDQFSAE
600 610 620 630 640 650
>>XP_011514053 (OMIM: 167800,211400,219700,277180,602421 (1510 aa)
initn: 114 init1: 114 opt: 199 Z-score: 201.5 bits: 48.7 E(85289): 0.00017
Smith-Waterman score: 199; 28.3% identity (59.5% similar) in 173 aa overlap (373-535:482-649)
350 360 370 380 390 400
pF1KB6 KKMCMYKYPGMKKKMGEFELAIVAGEFTDSEIMVMLGENGTGKTTFIRMLAGRLKPDEGG
..... : .:.:::... .. :.:.:.::
XP_011 SNGDDSLFFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMVIMGELEPSEGK
460 470 480 490 500 510
410 420 430 440 450
pF1KB6 EVPVLNVSYKPQKISPKSTGSVRQLL-------HEKIRDAYTHPQFVTDVMKPLQIENII
.:. : .: :.... . . . :.. :. :. : . .::.
XP_011 IKHSGRISFCSQ-FSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIV
520 530 540 550 560 570
460 470 480 490 500 510
pF1KB6 DQEVQ-TLSGGELQRVALALCLGKPADVYLIDEPSAYLD--SEQRLMAARVVKRFILHAK
: :::::. :..:: . : ::.::.: : .::: .:.... . : : : :.
XP_011 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK---LMAN
580 590 600 610 620
520 530 540 550 560 570
pF1KB6 KTAFVVEHDFIMATYLADRVIVFDGVPSKNTVANSPQTLLAGMNKFLSQLEITFRRDPNN
:: ..: . ::.....
XP_011 KTRILVTSK-MEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMGCDSFDQFSAE
630 640 650 660 670 680
>>XP_011541254 (OMIM: 607784) PREDICTED: ATP-binding cas (582 aa)
initn: 189 init1: 118 opt: 192 Z-score: 200.2 bits: 47.0 E(85289): 0.00021
Smith-Waterman score: 192; 26.2% identity (57.5% similar) in 221 aa overlap (104-316:32-238)
80 90 100 110 120 130
pF1KB6 NLPSNLEKETTHRYCANAFKLHRLPIPRPGEVLGLVGTNGIGKSTALKILAGKQKPNLGK
:..:..: .: :::: ..:::: .. ..
XP_011 CGFSHAFQKRIVASGYKTLLKCLSGKFCRRELIGIMGPSGAGKSTFMNILAGYRESGMKG
10 20 30 40 50 60
140 150 160 170 180
pF1KB6 YDDPPDWQEILTYFRGSELQNYFTK----ILEDDLKAIIKPQYVDQIPKAAKGTVGSILD
.::. : ::.. : : :..::. . :. . . .: ... :.
XP_011 --------QILVNGRPRELRT-FRKMSCYIMQDDM---LLPHLT--VLEAMMVSANLKLS
70 80 90 100
190 200 210 220 230 240
pF1KB6 RKDETKTQAI--VCQQLDLTHLKERNVEDLSGGELQRFACAVVCIQKADIFMFDEPSSYL
.:.:.: . . . : : .. . ::::. .:.: :. ... ...::::.: :
XP_011 EKQEVKKELVTEILTALGLMSCSHTRTALLSGGQRKRLAIALELVNNPPVMFFDEPTSGL
110 120 130 140 150 160
250 260 270 280 290 300
pF1KB6 DVKQRLKAAITIRSLINPDRYIIVVEHDLS--VLDYLSDFICCLYGVPSAYGVVTMPFSV
: . .... ..:: . : :: . :. : ...... . : :::: .
XP_011 DSASCFQVVSLMKSLAQGGRTIICTIHQPSAKLFEMFDKLYILSQGQCIFKGVVTNLIPY
170 180 190 200 210 220
310 320 330 340 350 360
pF1KB6 REGINIFLDGYVPTENLRFRDASLVFKVAETANEEEVKKMCMYKYPGMKKKMGEFELAIV
.:... :
XP_011 LKGLGLHCPTYHNPADFIIEVASGEYGDLNPMLFRAVQNGLCAMAEKKSSPEKNEVPAPC
230 240 250 260 270 280
>>XP_016873610 (OMIM: 607784) PREDICTED: ATP-binding cas (585 aa)
initn: 189 init1: 118 opt: 192 Z-score: 200.2 bits: 47.0 E(85289): 0.00021
Smith-Waterman score: 192; 26.2% identity (57.5% similar) in 221 aa overlap (104-316:35-241)
80 90 100 110 120 130
pF1KB6 NLPSNLEKETTHRYCANAFKLHRLPIPRPGEVLGLVGTNGIGKSTALKILAGKQKPNLGK
:..:..: .: :::: ..:::: .. ..
XP_016 ELREVKQLARGHTAGYKTLLKCLSGKFCRRELIGIMGPSGAGKSTFMNILAGYRESGMKG
10 20 30 40 50 60
140 150 160 170 180
pF1KB6 YDDPPDWQEILTYFRGSELQNYFTK----ILEDDLKAIIKPQYVDQIPKAAKGTVGSILD
.::. : ::.. : : :..::. . :. . . .: ... :.
XP_016 --------QILVNGRPRELRT-FRKMSCYIMQDDM---LLPHLT--VLEAMMVSANLKLS
70 80 90 100 110
190 200 210 220 230 240
pF1KB6 RKDETKTQAI--VCQQLDLTHLKERNVEDLSGGELQRFACAVVCIQKADIFMFDEPSSYL
.:.:.: . . . : : .. . ::::. .:.: :. ... ...::::.: :
XP_016 EKQEVKKELVTEILTALGLMSCSHTRTALLSGGQRKRLAIALELVNNPPVMFFDEPTSGL
120 130 140 150 160 170
250 260 270 280 290 300
pF1KB6 DVKQRLKAAITIRSLINPDRYIIVVEHDLS--VLDYLSDFICCLYGVPSAYGVVTMPFSV
: . .... ..:: . : :: . :. : ...... . : :::: .
XP_016 DSASCFQVVSLMKSLAQGGRTIICTIHQPSAKLFEMFDKLYILSQGQCIFKGVVTNLIPY
180 190 200 210 220 230
310 320 330 340 350 360
pF1KB6 REGINIFLDGYVPTENLRFRDASLVFKVAETANEEEVKKMCMYKYPGMKKKMGEFELAIV
.:... :
XP_016 LKGLGLHCPTYHNPADFIIEVASGEYGDLNPMLFRAVQNGLCAMAEKKSSPEKNEVPAPC
240 250 260 270 280 290
>>NP_071452 (OMIM: 607784) ATP-binding cassette sub-fami (646 aa)
initn: 216 init1: 118 opt: 192 Z-score: 199.6 bits: 47.1 E(85289): 0.00022
Smith-Waterman score: 192; 26.2% identity (57.5% similar) in 221 aa overlap (104-316:96-302)
80 90 100 110 120 130
pF1KB6 NLPSNLEKETTHRYCANAFKLHRLPIPRPGEVLGLVGTNGIGKSTALKILAGKQKPNLGK
:..:..: .: :::: ..:::: .. ..
NP_071 LSYSVREGPCWRKRGYKTLLKCLSGKFCRRELIGIMGPSGAGKSTFMNILAGYRESGMKG
70 80 90 100 110 120
140 150 160 170 180
pF1KB6 YDDPPDWQEILTYFRGSELQNYFTK----ILEDDLKAIIKPQYVDQIPKAAKGTVGSILD
.::. : ::.. : : :..::. . :. . . .: ... :.
NP_071 --------QILVNGRPRELRT-FRKMSCYIMQDDM---LLPHLT--VLEAMMVSANLKLS
130 140 150 160 170
190 200 210 220 230 240
pF1KB6 RKDETKTQAI--VCQQLDLTHLKERNVEDLSGGELQRFACAVVCIQKADIFMFDEPSSYL
.:.:.: . . . : : .. . ::::. .:.: :. ... ...::::.: :
NP_071 EKQEVKKELVTEILTALGLMSCSHTRTALLSGGQRKRLAIALELVNNPPVMFFDEPTSGL
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB6 DVKQRLKAAITIRSLINPDRYIIVVEHDLS--VLDYLSDFICCLYGVPSAYGVVTMPFSV
: . .... ..:: . : :: . :. : ...... . : :::: .
NP_071 DSASCFQVVSLMKSLAQGGRTIICTIHQPSAKLFEMFDKLYILSQGQCIFKGVVTNLIPY
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB6 REGINIFLDGYVPTENLRFRDASLVFKVAETANEEEVKKMCMYKYPGMKKKMGEFELAIV
.:... :
NP_071 LKGLGLHCPTYHNPADFIIEVASGEYGDLNPMLFRAVQNGLCAMAEKKSSPEKNEVPAPC
300 310 320 330 340 350
599 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 18:41:28 2016 done: Sat Nov 5 18:41:30 2016
Total Scan time: 9.220 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]