FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6179, 607 aa
  1>>>pF1KB6179 607 - 607 aa - 607 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4724+/-0.00104; mu= 18.5660+/- 0.063
 mean_var=73.4320+/-14.809, 0's: 0 Z-trim(104.1): 39  B-trim: 168 in 1/50
 Lambda= 0.149669
 statistics sampled from 7723 (7739) to 7723 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.593), E-opt: 0.2 (0.238), width:  16
 Scan time:  3.530

The best scores are:                                      opt bits E(32554)
CCDS3051.1 RPN1 gene_id:6184|Hs108|chr3            ( 607) 3897 851.3       0


>>CCDS3051.1 RPN1 gene_id:6184|Hs108|chr3                 (607 aa)
 initn: 3897 init1: 3897 opt: 3897  Z-score: 4546.3  bits: 851.3 E(32554):    0
Smith-Waterman score: 3897; 100.0% identity (100.0% similar) in 607 aa overlap (1-607:1-607)

               10        20        30        40        50        60
pF1KB6 MEAPAAGLFLLLLLGTWAPAPGSASSEAPPLINEDVKRTVDLSSHLAKVTAEVVLAHLGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MEAPAAGLFLLLLLGTWAPAPGSASSEAPPLINEDVKRTVDLSSHLAKVTAEVVLAHLGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GSTSRATSFLLALEPELEARLAHLGVQVKGEDEEENNLEVRETKIKGKSGRFFTVKLPVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 GSTSRATSFLLALEPELEARLAHLGVQVKGEDEEENNLEVRETKIKGKSGRFFTVKLPVA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LDPGAKISVIVETVYTHVLHPYPTQITQSEKQFVVFEGNHYFYSPYPTKTQTMRVKLASR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LDPGAKISVIVETVYTHVLHPYPTQITQSEKQFVVFEGNHYFYSPYPTKTQTMRVKLASR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 NVESYTKLGNPTRSEDLLDYGPFRDVPAYSQDTFKVHYENNSPFLTITSMTRVIEVSHWG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 NVESYTKLGNPTRSEDLLDYGPFRDVPAYSQDTFKVHYENNSPFLTITSMTRVIEVSHWG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 NIAVEENVDLKHTGAVLKGPFSRYDYQRQPDSGISSIRSFKTILPAAAQDVYYRDEIGNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 NIAVEENVDLKHTGAVLKGPFSRYDYQRQPDSGISSIRSFKTILPAAAQDVYYRDEIGNV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 STSHLLILDDSVEMEIRPRFPLFGGWKTHYIVGYNLPSYEYLYNLGDQYALKMRFVDHVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 STSHLLILDDSVEMEIRPRFPLFGGWKTHYIVGYNLPSYEYLYNLGDQYALKMRFVDHVF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 DEQVIDSLTVKIILPEGAKNIEIDSPYEISRAPDELHYTYLDTFGRPVIVAYKKNLVEQH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 DEQVIDSLTVKIILPEGAKNIEIDSPYEISRAPDELHYTYLDTFGRPVIVAYKKNLVEQH
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB6 IQDIVVHYTFNKVLMLQEPLLVVAAFYILFFTVIIYVRLDFSITKDPAAEARMKVACITE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 IQDIVVHYTFNKVLMLQEPLLVVAAFYILFFTVIIYVRLDFSITKDPAAEARMKVACITE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB6 QVLTLVNKRIGLYRHFDETVNRYKQSRDISTLNSGKKSLETEHKALTSEIALLQSRLKTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 QVLTLVNKRIGLYRHFDETVNRYKQSRDISTLNSGKKSLETEHKALTSEIALLQSRLKTE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB6 GSDLCDRVSEMQKLDAQVKELVLKSAVEAERLVAGKLKKDTYIENEKLISGKRQELVTKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 GSDLCDRVSEMQKLDAQVKELVLKSAVEAERLVAGKLKKDTYIENEKLISGKRQELVTKI
              550       560       570       580       590       600

              
pF1KB6 DHILDAL
       :::::::
CCDS30 DHILDAL
              




607 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 13:42:59 2016 done: Sat Nov  5 13:43:00 2016
 Total Scan time:  3.530 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]