FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6232, 676 aa
  1>>>pF1KB6232 676 - 676 aa - 676 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7963+/-0.000834; mu= 17.9797+/- 0.050
 mean_var=91.0932+/-18.112, 0's: 0 Z-trim(109.1): 14  B-trim: 77 in 1/51
 Lambda= 0.134379
 statistics sampled from 10639 (10644) to 10639 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.327), width:  16
 Scan time:  4.090

The best scores are:                                      opt bits E(32554)
CCDS10987.1 TCF25 gene_id:22980|Hs108|chr16        ( 676) 4560 894.5       0


>>CCDS10987.1 TCF25 gene_id:22980|Hs108|chr16             (676 aa)
 initn: 4560 init1: 4560 opt: 4560  Z-score: 4778.0  bits: 894.5 E(32554):    0
Smith-Waterman score: 4560; 100.0% identity (100.0% similar) in 676 aa overlap (1-676:1-676)

               10        20        30        40        50        60
pF1KB6 MSRRALRRLRGEQRGQEPLGPGALHFDLRDDDDAEEEGPKRELGVRRPGGAGKEGVRVNN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MSRRALRRLRGEQRGQEPLGPGALHFDLRDDDDAEEEGPKRELGVRRPGGAGKEGVRVNN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 RFELINIDDLEDDPVVNGERSGCALTDAVAPGNKGRGQRGNTESKTDGDDTETVPSEQSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RFELINIDDLEDDPVVNGERSGCALTDAVAPGNKGRGQRGNTESKTDGDDTETVPSEQSH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ASGKLRKKKKKQKNKKSSTGEASENGLEDIDRILERIEDSTGLNRPGPAPLSSRKHVLYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ASGKLRKKKKKQKNKKSSTGEASENGLEDIDRILERIEDSTGLNRPGPAPLSSRKHVLYV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 EHRHLNPDTELKRYFGARAILGEQRPRQRQRVYPKCTWLTTPKSTWPRYSKPGLSMRLLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EHRHLNPDTELKRYFGARAILGEQRPRQRQRVYPKCTWLTTPKSTWPRYSKPGLSMRLLE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 SKKGLSFFAFEHSEEYQQAQHKFLVAVESMEPNNIVVLLQTSPYHVDSLLQLSDACRFQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SKKGLSFFAFEHSEEYQQAQHKFLVAVESMEPNNIVVLLQTSPYHVDSLLQLSDACRFQE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 DQEMARDLVERALYSMECAFHPLFSLTSGACRLDYRRPENRSFYLALYKQMSFLEKRGCP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DQEMARDLVERALYSMECAFHPLFSLTSGACRLDYRRPENRSFYLALYKQMSFLEKRGCP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 RTALEYCKLILSLEPDEDPLCMLLLIDHLALRARNYEYLIRLFQEWEAHRNLSQLPNFAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RTALEYCKLILSLEPDEDPLCMLLLIDHLALRARNYEYLIRLFQEWEAHRNLSQLPNFAF
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB6 SVPLAYFLLSQQTDLPECEQSSARQKASLLIQQALTMFPGVLLPLLESCSVRPDASVSSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SVPLAYFLLSQQTDLPECEQSSARQKASLLIQQALTMFPGVLLPLLESCSVRPDASVSSH
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB6 RFFGPNAEISQPPALSQLVNLYLGRSHFLWKEPATMSWLEENVHEVLQAVDAGDPAVEAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RFFGPNAEISQPPALSQLVNLYLGRSHFLWKEPATMSWLEENVHEVLQAVDAGDPAVEAC
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB6 ENRRKVLYQRAPRNIHRHVILSEIKEAVAALPPDVTTQSVMGFDPLPPSDTIYSYVRPER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ENRRKVLYQRAPRNIHRHVILSEIKEAVAALPPDVTTQSVMGFDPLPPSDTIYSYVRPER
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB6 LSPISHGNTIALFFRSLLPNYTMEGERPEEGVAGGLNRNQGLNRLMLAVRDMMANFHLND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LSPISHGNTIALFFRSLLPNYTMEGERPEEGVAGGLNRNQGLNRLMLAVRDMMANFHLND
              610       620       630       640       650       660

              670      
pF1KB6 LEAPHEDDAEGEGEWD
       ::::::::::::::::
CCDS10 LEAPHEDDAEGEGEWD
              670      




676 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 23:04:30 2016 done: Sat Nov  5 23:04:31 2016
 Total Scan time:  4.090 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]