FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6243, 753 aa
  1>>>pF1KB6243 753 - 753 aa - 753 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 13.8085+/-0.00115; mu= -17.5213+/- 0.069
 mean_var=497.6757+/-106.709, 0's: 0 Z-trim(116.0): 726  B-trim: 988 in 1/52
 Lambda= 0.057491
 statistics sampled from 15821 (16618) to 15821 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.784), E-opt: 0.2 (0.51), width:  16
 Scan time:  5.170

The best scores are:                                      opt bits E(32554)
CCDS30676.1 MTF1 gene_id:4520|Hs108|chr1           ( 753) 5093 437.2 4.5e-122


>>CCDS30676.1 MTF1 gene_id:4520|Hs108|chr1                (753 aa)
 initn: 5093 init1: 5093 opt: 5093  Z-score: 2305.1  bits: 437.2 E(32554): 4.5e-122
Smith-Waterman score: 5093; 100.0% identity (100.0% similar) in 753 aa overlap (1-753:1-753)

               10        20        30        40        50        60
pF1KB6 MGEHSPDNNIIYFEAEEDELTPDDKMLRFVDKNGLVPSSSGTVYDRTTVLIEQDPGTLED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MGEHSPDNNIIYFEAEEDELTPDDKMLRFVDKNGLVPSSSGTVYDRTTVLIEQDPGTLED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EDDDGQCGEHLPFLVGGEEGFHLIDHEAMSQGYVQHIISPDQIHLTINPGSTPMPRNIEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 EDDDGQCGEHLPFLVGGEEGFHLIDHEAMSQGYVQHIISPDQIHLTINPGSTPMPRNIEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ATLTLQSECPETKRKEVKRYQCTFEGCPRTYSTAGNLRTHQKTHRGEYTFVCNQEGCGKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 ATLTLQSECPETKRKEVKRYQCTFEGCPRTYSTAGNLRTHQKTHRGEYTFVCNQEGCGKA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 FLTSYSLRIHVRVHTKEKPFECDVQGCEKAFNTLYRLKAHQRLHTGKTFNCESEGCSKYF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 FLTSYSLRIHVRVHTKEKPFECDVQGCEKAFNTLYRLKAHQRLHTGKTFNCESEGCSKYF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 TTLSDLRKHIRTHTGEKPFRCDHDGCGKAFAASHHLKTHVRTHTGERPFFCPSNGCEKTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 TTLSDLRKHIRTHTGEKPFRCDHDGCGKAFAASHHLKTHVRTHTGERPFFCPSNGCEKTF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 STQYSLKSHMKGHDNKGHSYNALPQHNGSEDTNHSLCLSDLSLLSTDSELRENSSTTQGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 STQYSLKSHMKGHDNKGHSYNALPQHNGSEDTNHSLCLSDLSLLSTDSELRENSSTTQGQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 DLSTISPAIIFESMFQNSDDTAIQEDPQQTASLTESFNGDAESVSDVPPSTGNSASLSLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 DLSTISPAIIFESMFQNSDDTAIQEDPQQTASLTESFNGDAESVSDVPPSTGNSASLSLP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB6 LVLQPGLSEPPQPLLPASAPSAPPPAPSLGPGSQQAAFGNPPALLQPPEVPVPHSTQFAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LVLQPGLSEPPQPLLPASAPSAPPPAPSLGPGSQQAAFGNPPALLQPPEVPVPHSTQFAA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB6 NHQEFLPHPQAPQPIVPGLSVVAGASASAAAVASAVAAPAPPQSTTEPLPAMVQTLPLGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 NHQEFLPHPQAPQPIVPGLSVVAGASASAAAVASAVAAPAPPQSTTEPLPAMVQTLPLGA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB6 NSVLTNNPTITITPTPNTAILQSSLVMGEQNLQWILNGATSSPQNQEQIQQASKVEKVFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 NSVLTNNPTITITPTPNTAILQSSLVMGEQNLQWILNGATSSPQNQEQIQQASKVEKVFF
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB6 TTAVPVASSPGSSVQQIGLSVPVIIIKQEEACQCQCACRDSAKERASSRRKGCSSPPPPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 TTAVPVASSPGSSVQQIGLSVPVIIIKQEEACQCQCACRDSAKERASSRRKGCSSPPPPE
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB6 PSPQAPDGPSLQLPAQTFSSAPVPGSSSSTLPSSCEQSRQAETPSDPQTETLSAMDVSEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 PSPQAPDGPSLQLPAQTFSSAPVPGSSSSTLPSSCEQSRQAETPSDPQTETLSAMDVSEF
              670       680       690       700       710       720

              730       740       750   
pF1KB6 LSLQSLDTPSNLIPIEALLQGEEEMGLTSSFSK
       :::::::::::::::::::::::::::::::::
CCDS30 LSLQSLDTPSNLIPIEALLQGEEEMGLTSSFSK
              730       740       750   




753 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:26:29 2016 done: Sat Nov  5 14:26:30 2016
 Total Scan time:  5.170 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]