Result of FASTA (ccds) for
pF1KB6245
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6245, 753 aa
1>>>pF1KB6245 753 - 753 aa - 753 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.7651+/-0.000994; mu= -3.8085+/- 0.060
mean_var=297.0552+/-59.709, 0's: 0 Z-trim(114.9): 60 B-trim: 9 in 1/51
Lambda= 0.074414
statistics sampled from 15441 (15496) to 15441 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.774), E-opt: 0.2 (0.476), width: 16
Scan time: 4.510
The best scores are: opt bits E(32554)
CCDS4339.1 SOX30 gene_id:11063|Hs108|chr5 ( 753) 5126 564.1 2.9e-160
CCDS4340.1 SOX30 gene_id:11063|Hs108|chr5 ( 501) 3104 346.9 4.6e-95
CCDS78080.1 SOX30 gene_id:11063|Hs108|chr5 ( 448) 2985 334.1 3e-91
>>CCDS4339.1 SOX30 gene_id:11063|Hs108|chr5 (753 aa)
initn: 5126 init1: 5126 opt: 5126 Z-score: 2990.8 bits: 564.1 E(32554): 2.9e-160
Smith-Waterman score: 5126; 100.0% identity (100.0% similar) in 753 aa overlap (1-753:1-753)
10 20 30 40 50 60
pF1KB6 MERARPEPPPQPRPLRPAPPPLPVEGTSFWAAAMEPPPSSPTLSAAASATLASSCGEAVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MERARPEPPPQPRPLRPAPPPLPVEGTSFWAAAMEPPPSSPTLSAAASATLASSCGEAVA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 SGLQPAVRRLLQVKPEQVLLLPQPQAQNEEAAASSAQARLLQFRPDLRLLQPPTASDGAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SGLQPAVRRLLQVKPEQVLLLPQPQAQNEEAAASSAQARLLQFRPDLRLLQPPTASDGAT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SRPELHPVQPLALHVKAKKQKLGPSLDQSVGPRGAVETGPRASRVVKLEGPGPALGYFRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SRPELHPVQPLALHVKAKKQKLGPSLDQSVGPRGAVETGPRASRVVKLEGPGPALGYFRG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 DEKGKLEAEEVMRDSMQGGAGKSPAAIREGVIKTEEPERLLEDCRLGAEPASNGLVHGSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DEKGKLEAEEVMRDSMQGGAGKSPAAIREGVIKTEEPERLLEDCRLGAEPASNGLVHGSA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 EVILAPTSGAFGPHQQDLRIPLTLHTVPPGARIQFQGAPPSELIRLTKVPLTPVPTKMQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EVILAPTSGAFGPHQQDLRIPLTLHTVPPGARIQFQGAPPSELIRLTKVPLTPVPTKMQS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 LLEPSVKIETKDVPLTVLPSDAGIPDTPFSKDRNGHVKRPMNAFMVWARIHRPALAKANP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LLEPSVKIETKDVPLTVLPSDAGIPDTPFSKDRNGHVKRPMNAFMVWARIHRPALAKANP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 AANNAEISVQLGLEWNKLSEEQKKPYYDEAQKIKEKHREEFPGWVYQPRPGKRKRFPLSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 AANNAEISVQLGLEWNKLSEEQKKPYYDEAQKIKEKHREEFPGWVYQPRPGKRKRFPLSV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB6 SNVFSGTTQNIISTNPTTVYPYRSPTYSVVIPSLQNPITHPVGETSPAIQLPTPAVQSPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SNVFSGTTQNIISTNPTTVYPYRSPTYSVVIPSLQNPITHPVGETSPAIQLPTPAVQSPS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB6 PVTLFQPSVSSAAQVAVQDPSLPVYPALPPQRFTGPSQTDTHQLHSEATHTVKQPTPVSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PVTLFQPSVSSAAQVAVQDPSLPVYPALPPQRFTGPSQTDTHQLHSEATHTVKQPTPVSL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB6 ESANRISSSASTAHARFATSTIQPPREYSSVSPCPRSAPIPQASPIPHPHVYQPPPLGHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ESANRISSSASTAHARFATSTIQPPREYSSVSPCPRSAPIPQASPIPHPHVYQPPPLGHP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB6 ATLFGTPPRFSFHHPYFLPGPHYFPSSTCPYSRPPFGYGNFPSSMPECLSYYEDRYPKHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ATLFGTPPRFSFHHPYFLPGPHYFPSSTCPYSRPPFGYGNFPSSMPECLSYYEDRYPKHE
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB6 GIFSTLNRDYSFRDYSSECTHSENSRSCENMNGTSYYNSHSHSGEENLNPVPQLDIGTLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GIFSTLNRDYSFRDYSSECTHSENSRSCENMNGTSYYNSHSHSGEENLNPVPQLDIGTLE
670 680 690 700 710 720
730 740 750
pF1KB6 NVFTAPTSTPSSIQQVNVTDSDEEEEEKVLRDL
:::::::::::::::::::::::::::::::::
CCDS43 NVFTAPTSTPSSIQQVNVTDSDEEEEEKVLRDL
730 740 750
>>CCDS4340.1 SOX30 gene_id:11063|Hs108|chr5 (501 aa)
initn: 3104 init1: 3104 opt: 3104 Z-score: 1820.1 bits: 346.9 E(32554): 4.6e-95
Smith-Waterman score: 3104; 100.0% identity (100.0% similar) in 462 aa overlap (1-462:1-462)
10 20 30 40 50 60
pF1KB6 MERARPEPPPQPRPLRPAPPPLPVEGTSFWAAAMEPPPSSPTLSAAASATLASSCGEAVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MERARPEPPPQPRPLRPAPPPLPVEGTSFWAAAMEPPPSSPTLSAAASATLASSCGEAVA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 SGLQPAVRRLLQVKPEQVLLLPQPQAQNEEAAASSAQARLLQFRPDLRLLQPPTASDGAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SGLQPAVRRLLQVKPEQVLLLPQPQAQNEEAAASSAQARLLQFRPDLRLLQPPTASDGAT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SRPELHPVQPLALHVKAKKQKLGPSLDQSVGPRGAVETGPRASRVVKLEGPGPALGYFRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SRPELHPVQPLALHVKAKKQKLGPSLDQSVGPRGAVETGPRASRVVKLEGPGPALGYFRG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 DEKGKLEAEEVMRDSMQGGAGKSPAAIREGVIKTEEPERLLEDCRLGAEPASNGLVHGSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DEKGKLEAEEVMRDSMQGGAGKSPAAIREGVIKTEEPERLLEDCRLGAEPASNGLVHGSA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 EVILAPTSGAFGPHQQDLRIPLTLHTVPPGARIQFQGAPPSELIRLTKVPLTPVPTKMQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EVILAPTSGAFGPHQQDLRIPLTLHTVPPGARIQFQGAPPSELIRLTKVPLTPVPTKMQS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 LLEPSVKIETKDVPLTVLPSDAGIPDTPFSKDRNGHVKRPMNAFMVWARIHRPALAKANP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LLEPSVKIETKDVPLTVLPSDAGIPDTPFSKDRNGHVKRPMNAFMVWARIHRPALAKANP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 AANNAEISVQLGLEWNKLSEEQKKPYYDEAQKIKEKHREEFPGWVYQPRPGKRKRFPLSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 AANNAEISVQLGLEWNKLSEEQKKPYYDEAQKIKEKHREEFPGWVYQPRPGKRKRFPLSV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB6 SNVFSGTTQNIISTNPTTVYPYRSPTYSVVIPSLQNPITHPVGETSPAIQLPTPAVQSPS
::::::::::::::::::::::::::::::::::::::::::
CCDS43 SNVFSGTTQNIISTNPTTVYPYRSPTYSVVIPSLQNPITHPVVHALTVGLPLAMEIFRVQ
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB6 PVTLFQPSVSSAAQVAVQDPSLPVYPALPPQRFTGPSQTDTHQLHSEATHTVKQPTPVSL
CCDS43 CQNALVIMKTGTQNMRVSFQL
490 500
>>CCDS78080.1 SOX30 gene_id:11063|Hs108|chr5 (448 aa)
initn: 2985 init1: 2985 opt: 2985 Z-score: 1751.8 bits: 334.1 E(32554): 3e-91
Smith-Waterman score: 2985; 100.0% identity (100.0% similar) in 431 aa overlap (323-753:18-448)
300 310 320 330 340 350
pF1KB6 PVPTKMQSLLEPSVKIETKDVPLTVLPSDAGIPDTPFSKDRNGHVKRPMNAFMVWARIHR
::::::::::::::::::::::::::::::
CCDS78 MEKCCRGKEQSLLCIQQGIPDTPFSKDRNGHVKRPMNAFMVWARIHR
10 20 30 40
360 370 380 390 400 410
pF1KB6 PALAKANPAANNAEISVQLGLEWNKLSEEQKKPYYDEAQKIKEKHREEFPGWVYQPRPGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 PALAKANPAANNAEISVQLGLEWNKLSEEQKKPYYDEAQKIKEKHREEFPGWVYQPRPGK
50 60 70 80 90 100
420 430 440 450 460 470
pF1KB6 RKRFPLSVSNVFSGTTQNIISTNPTTVYPYRSPTYSVVIPSLQNPITHPVGETSPAIQLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 RKRFPLSVSNVFSGTTQNIISTNPTTVYPYRSPTYSVVIPSLQNPITHPVGETSPAIQLP
110 120 130 140 150 160
480 490 500 510 520 530
pF1KB6 TPAVQSPSPVTLFQPSVSSAAQVAVQDPSLPVYPALPPQRFTGPSQTDTHQLHSEATHTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 TPAVQSPSPVTLFQPSVSSAAQVAVQDPSLPVYPALPPQRFTGPSQTDTHQLHSEATHTV
170 180 190 200 210 220
540 550 560 570 580 590
pF1KB6 KQPTPVSLESANRISSSASTAHARFATSTIQPPREYSSVSPCPRSAPIPQASPIPHPHVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 KQPTPVSLESANRISSSASTAHARFATSTIQPPREYSSVSPCPRSAPIPQASPIPHPHVY
230 240 250 260 270 280
600 610 620 630 640 650
pF1KB6 QPPPLGHPATLFGTPPRFSFHHPYFLPGPHYFPSSTCPYSRPPFGYGNFPSSMPECLSYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 QPPPLGHPATLFGTPPRFSFHHPYFLPGPHYFPSSTCPYSRPPFGYGNFPSSMPECLSYY
290 300 310 320 330 340
660 670 680 690 700 710
pF1KB6 EDRYPKHEGIFSTLNRDYSFRDYSSECTHSENSRSCENMNGTSYYNSHSHSGEENLNPVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 EDRYPKHEGIFSTLNRDYSFRDYSSECTHSENSRSCENMNGTSYYNSHSHSGEENLNPVP
350 360 370 380 390 400
720 730 740 750
pF1KB6 QLDIGTLENVFTAPTSTPSSIQQVNVTDSDEEEEEKVLRDL
:::::::::::::::::::::::::::::::::::::::::
CCDS78 QLDIGTLENVFTAPTSTPSSIQQVNVTDSDEEEEEKVLRDL
410 420 430 440
753 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 13:55:06 2016 done: Sat Nov 5 13:55:07 2016
Total Scan time: 4.510 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]