FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6309, 258 aa
  1>>>pF1KB6309 258 - 258 aa - 258 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7935+/-0.000579; mu= 12.7618+/- 0.035
 mean_var=75.0733+/-15.190, 0's: 0 Z-trim(113.6): 8  B-trim: 0 in 0/49
 Lambda= 0.148024
 statistics sampled from 14192 (14197) to 14192 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.436), width:  16
 Scan time:  2.770

The best scores are:                                      opt bits E(32554)
CCDS12361.1 PGLS gene_id:25796|Hs108|chr19         ( 258) 1700 371.5 3.2e-103
CCDS101.1 H6PD gene_id:9563|Hs108|chr1             ( 791)  354 84.3 2.8e-16
CCDS72697.1 H6PD gene_id:9563|Hs108|chr1           ( 802)  354 84.3 2.9e-16


>>CCDS12361.1 PGLS gene_id:25796|Hs108|chr19              (258 aa)
 initn: 1700 init1: 1700 opt: 1700  Z-score: 1966.6  bits: 371.5 E(32554): 3.2e-103
Smith-Waterman score: 1700; 100.0% identity (100.0% similar) in 258 aa overlap (1-258:1-258)

               10        20        30        40        50        60
pF1KB6 MAAPAPGLISVFSSSQELGAALAQLVAQRAACCLAGARARFALGLSGGSLVSMLARELPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAAPAPGLISVFSSSQELGAALAQLVAQRAACCLAGARARFALGLSGGSLVSMLARELPA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 AVAPAGPASLARWTLGFCDERLVPFDHAESTYGLYRTHLLSRLPIPESQVITINPELPVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AVAPAGPASLARWTLGFCDERLVPFDHAESTYGLYRTHLLSRLPIPESQVITINPELPVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EAAEDYAKKLRQAFQGDSIPVFDLLILGVGPDGHTCSLFPDHPLLQEREKIVAPISDSPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EAAEDYAKKLRQAFQGDSIPVFDLLILGVGPDGHTCSLFPDHPLLQEREKIVAPISDSPK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 PPPQRVTLTLPVLNAARTVIFVATGEGKAAVLKRILEDQEENPLPAALVQPHTGKLCWFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PPPQRVTLTLPVLNAARTVIFVATGEGKAAVLKRILEDQEENPLPAALVQPHTGKLCWFL
              190       200       210       220       230       240

              250        
pF1KB6 DEAAARLLTVPFEKHSTL
       ::::::::::::::::::
CCDS12 DEAAARLLTVPFEKHSTL
              250        

>>CCDS101.1 H6PD gene_id:9563|Hs108|chr1                  (791 aa)
 initn: 291 init1: 174 opt: 354  Z-score: 405.7  bits: 84.3 E(32554): 2.8e-16
Smith-Waterman score: 354; 33.7% identity (62.6% similar) in 246 aa overlap (8-244:555-788)

                                      10        20        30       
pF1KB6                        MAAPAPGLISVFSSSQELGAALAQLVAQRAACCLAGA
                                     :.:..  :.:: . ::. .  .:.   :  
CCDS10 QQPEQLVPGPGPAPMPSDFQVLRAKYRESPLVSAW--SEELISKLANDI--EATAVRAVR
          530       540       550         560       570         580

         40        50        60         70        80        90     
pF1KB6 R-ARFALGLSGGSLVSMLARELPAAVAPAG-PASLARWTLGFCDERLVPFDHAESTYGLY
       : ..: :.:::::    : ..:  :.:  : :   :.  : . ::: ::..  ::..   
CCDS10 RFGQFHLALSGGSSPVALFQQL--ATAHYGFP--WAHTHLWLVDERCVPLSDPESNFQGL
              590       600         610         620       630      

         100       110           120         130       140         
pF1KB6 RTHLLSRLPIPESQV----ITINPELPVEE--AAEDYAKKLRQAFQGDSIPVFDLLILGV
       ..:::... ::  ..    . .. .: .::  .:. ::...     ..:   :::..::.
CCDS10 QAHLLQHVRIPYYNIHPMPVHLQQRLCAEEDQGAQIYAREISALVANSS---FDLVLLGM
        640       650       660       670       680          690   

     150       160       170       180       190       200         
pF1KB6 GPDGHTCSLFPDHPLLQEREKIVAPISDSPKPPPQRVTLTLPVLNAARTVIFVATGEGKA
       : :::: ::::. :   . :..:. .. ::. : .:..:.::..: :. :  .. :. : 
CCDS10 GADGHTASLFPQSPTGLDGEQLVV-LTTSPSQPHRRMSLSLPLINRAKKVAVLVMGRMKR
           700       710        720       730       740       750  

     210        220       230       240       250        
pF1KB6 AVLKRILE-DQEENPLPAALVQPHTGKLCWFLDEAAARLLTVPFEKHSTL
        .   . .  .: .  : . : ::.:.: :..:  :              
CCDS10 EITTLVSRVGHEPKKWPISGVLPHSGQLVWYMDYDAFLG           
            760       770       780       790            

>>CCDS72697.1 H6PD gene_id:9563|Hs108|chr1                (802 aa)
 initn: 291 init1: 174 opt: 354  Z-score: 405.6  bits: 84.3 E(32554): 2.9e-16
Smith-Waterman score: 354; 33.7% identity (62.6% similar) in 246 aa overlap (8-244:566-799)

                                      10        20        30       
pF1KB6                        MAAPAPGLISVFSSSQELGAALAQLVAQRAACCLAGA
                                     :.:..  :.:: . ::. .  .:.   :  
CCDS72 QQPEQLVPGPGPAPMPSDFQVLRAKYRESPLVSAW--SEELISKLANDI--EATAVRAVR
         540       550       560       570         580         590 

         40        50        60         70        80        90     
pF1KB6 R-ARFALGLSGGSLVSMLARELPAAVAPAG-PASLARWTLGFCDERLVPFDHAESTYGLY
       : ..: :.:::::    : ..:  :.:  : :   :.  : . ::: ::..  ::..   
CCDS72 RFGQFHLALSGGSSPVALFQQL--ATAHYGFP--WAHTHLWLVDERCVPLSDPESNFQGL
             600       610         620         630       640       

         100       110           120         130       140         
pF1KB6 RTHLLSRLPIPESQV----ITINPELPVEE--AAEDYAKKLRQAFQGDSIPVFDLLILGV
       ..:::... ::  ..    . .. .: .::  .:. ::...     ..:   :::..::.
CCDS72 QAHLLQHVRIPYYNIHPMPVHLQQRLCAEEDQGAQIYAREISALVANSS---FDLVLLGM
       650       660       670       680       690          700    

     150       160       170       180       190       200         
pF1KB6 GPDGHTCSLFPDHPLLQEREKIVAPISDSPKPPPQRVTLTLPVLNAARTVIFVATGEGKA
       : :::: ::::. :   . :..:. .. ::. : .:..:.::..: :. :  .. :. : 
CCDS72 GADGHTASLFPQSPTGLDGEQLVV-LTTSPSQPHRRMSLSLPLINRAKKVAVLVMGRMKR
          710       720        730       740       750       760   

     210        220       230       240       250        
pF1KB6 AVLKRILE-DQEENPLPAALVQPHTGKLCWFLDEAAARLLTVPFEKHSTL
        .   . .  .: .  : . : ::.:.: :..:  :              
CCDS72 EITTLVSRVGHEPKKWPISGVLPHSGQLVWYMDYDAFLG           
           770       780       790       800             




258 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  9 12:17:33 2016 done: Wed Nov  9 12:17:33 2016
 Total Scan time:  2.770 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]