FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6312, 280 aa
  1>>>pF1KB6312 280 - 280 aa - 280 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1194+/-0.000806; mu= 12.9008+/- 0.049
 mean_var=98.2015+/-18.916, 0's: 0 Z-trim(110.2): 15  B-trim: 0 in 0/50
 Lambda= 0.129424
 statistics sampled from 11419 (11426) to 11419 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.351), width:  16
 Scan time:  2.720

The best scores are:                                      opt bits E(32554)
CCDS424.1 CDCA8 gene_id:55143|Hs108|chr1           ( 280) 1776 341.4 4.4e-94


>>CCDS424.1 CDCA8 gene_id:55143|Hs108|chr1                (280 aa)
 initn: 1776 init1: 1776 opt: 1776  Z-score: 1802.5  bits: 341.4 E(32554): 4.4e-94
Smith-Waterman score: 1776; 100.0% identity (100.0% similar) in 280 aa overlap (1-280:1-280)

               10        20        30        40        50        60
pF1KB6 MAPRKGSSRVAKTNSLRRRKLASFLKDFDREVEIRIKQIESDRQNLLKEVDNLYNIEILR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MAPRKGSSRVAKTNSLRRRKLASFLKDFDREVEIRIKQIESDRQNLLKEVDNLYNIEILR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LPKALREMNWLDYFALGGNKQALEEAATADLDITEINKLTAEAIQTPLKSAKTRKVIQVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LPKALREMNWLDYFALGGNKQALEEAATADLDITEINKLTAEAIQTPLKSAKTRKVIQVD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EMIVEEEEEEENERKNLQTARVKRCPPSKKRTQSIQGKGKGKRSSRANTVTPAVGRLEVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EMIVEEEEEEENERKNLQTARVKRCPPSKKRTQSIQGKGKGKRSSRANTVTPAVGRLEVS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 MVKPTPGLTPRFDSRVFKTPGLRTPAAGERIYNISGNGSPLADSKEIFLTVPVGGGESLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MVKPTPGLTPRFDSRVFKTPGLRTPAAGERIYNISGNGSPLADSKEIFLTVPVGGGESLR
              190       200       210       220       230       240

              250       260       270       280
pF1KB6 LLASDLQRHSIAQLDPEALGNIKKLSNRLAQICSSIRTHK
       ::::::::::::::::::::::::::::::::::::::::
CCDS42 LLASDLQRHSIAQLDPEALGNIKKLSNRLAQICSSIRTHK
              250       260       270       280




280 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:40:48 2016 done: Fri Nov  4 22:40:48 2016
 Total Scan time:  2.720 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]